diff split_labelmap.xml @ 0:9e15e70bb22b draft default tip

planemo upload for repository https://github.com/BMCV/galaxy-image-analysis/tools/split_labelmaps/ commit 787ebcc8daa1834214bc92c201c921c704ef2d1f

--- /dev/null	Thu Jan 01 00:00:00 1970 +0000
+++ b/split_labelmap.xml	Mon Jan 07 05:36:05 2019 -0500
@@ -0,0 +1,29 @@
+<tool id="split_labelmap" name="Split Labelmap" version="0.1"> 
+  <description>Split Labelmap</description>
+  <requirements> 
+    <requirement type="package" version="0.14.1" >scikit-image</requirement>
+    <requirement type="package" version="1.15.4">numpy</requirement>
+    <requirement type="package" version="0.15.1">tifffile</requirement> <!--not sure if this is required-->
+  </requirements>
+  <command> 
+        <![CDATA[
+        python "$__tool_directory__/split_labelmap.py" '$input' '$output'
+        ]]>
+  </command>
+  <inputs> 
+    <param name="input" type="data" format="tiff,png,jpg,bmp" label="Image containing labels"/> 
+  </inputs>
+  <outputs>
+    <data name="output" format="tiff"/>
+  </outputs>
+  <tests>
+    <test>
+	    <param name="input" value="sample_seg.tif"/>
+	    <output name="output" value="out.tif" ftype="tiff" compare="sim_size"/>
+    </test>
+  </tests>
+  <help>Takes a label image and outputs a similar file with the given name where the labeled parts of the image that touch (or overlap) are separated by at least 1 pixel (at most 2).</help>
+  <citations>
+      <citation type="doi">10.1016/j.jbiotec.2017.07.019</citation>
+  </citations>
+</tool>