comparison split_labelmap.xml @ 0:9e15e70bb22b draft default tip

planemo upload for repository https://github.com/BMCV/galaxy-image-analysis/tools/split_labelmaps/ commit 787ebcc8daa1834214bc92c201c921c704ef2d1f

0:9e15e70bb22b

<tool id="split_labelmap" name="Split Labelmap" version="0.1"> 
  <description>Split Labelmap</description>
  <requirements> 
    <requirement type="package" version="0.14.1" >scikit-image</requirement>
    <requirement type="package" version="1.15.4">numpy</requirement>
    <requirement type="package" version="0.15.1">tifffile</requirement> <!--not sure if this is required-->
  </requirements>
  <command> 
        <![CDATA[
        python "$__tool_directory__/split_labelmap.py" '$input' '$output'
        ]]>
  </command>
  <inputs> 
    <param name="input" type="data" format="tiff,png,jpg,bmp" label="Image containing labels"/> 
  </inputs>
  <outputs>
    <data name="output" format="tiff"/>
  </outputs>
  <tests>
    <test>
	    <param name="input" value="sample_seg.tif"/>
	    <output name="output" value="out.tif" ftype="tiff" compare="sim_size"/>
    </test>
  </tests>
  <help>Takes a label image and outputs a similar file with the given name where the labeled parts of the image that touch (or overlap) are separated by at least 1 pixel (at most 2).</help>
  <citations>
      <citation type="doi">10.1016/j.jbiotec.2017.07.019</citation>
  </citations>
</tool>