Mercurial > repos > thomaswollmann > detection_viz
changeset 2:69218d7300e5 draft default tip
planemo upload for repository https://github.com/BMCV/galaxy-image-analysis/tools/detection_viz/ commit 787ebcc8daa1834214bc92c201c921c704ef2d1f
| author | thomaswollmann |
|---|---|
| date | Mon, 07 Jan 2019 04:56:28 -0500 |
| parents | 245a1cde4cd5 |
| children | |
| files | detection_viz.py detection_viz.xml test-data/out.tif |
| diffstat | 3 files changed, 4 insertions(+), 3 deletions(-) [+] |
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--- a/detection_viz.py Wed Dec 12 04:50:23 2018 -0500 +++ b/detection_viz.py Mon Jan 07 04:56:28 2019 -0500 @@ -32,8 +32,7 @@ if fp is not None: plot_circles(fp, ax, 'darkorange', stroke_size, circle_radius) - fig.canvas.print_png("tmp.png", dpi=1800) - os.rename("tmp.png", output_file) + fig.canvas.print_png(output_file, dpi=1800) if __name__ == "__main__": parser = argparse.ArgumentParser()
--- a/detection_viz.xml Wed Dec 12 04:50:23 2018 -0500 +++ b/detection_viz.xml Mon Jan 07 04:56:28 2019 -0500 @@ -6,7 +6,9 @@ </requirements> <command> <![CDATA[ - python '$__tool_directory__/detection_viz.py' '$input' '$output' --stroke_size $thickness --circle_radius $circle_radius $tp $fn $fp + python '$__tool_directory__/detection_viz.py' '$input' ./tmp.png + --stroke_size $thickness --circle_radius $circle_radius $tp $fn $fp + && mv ./tmp.png '$output' ]]> </command> <inputs>