Mercurial > repos > thanhlv > kaptive

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"planemo upload for repository https://github.com/quadram-institute-bioscience/galaxy-tools/tree/master/tools/kaptive commit f07ab842192ee3d9d1cc46c1de3c542213152a31-dirty"
author thanhlv
date Tue, 19 Oct 2021 09:32:23 +0000
parents 3e11d50307ce
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Assembly: exact_match
---------------------
    Best match locus: O2v2
    Match confidence: Very high
    Problems: None
    Coverage: 100.00%
    Identity: 98.43%
    Length discrepancy: 0 bp

    Locus assembly pieces:
        NODE_2 (84349-95160, - strand)  ATGAAG...TGGCAT (10812 bp)

    Expected genes in locus: 10 / 10 (100%)
        O1/O2v2_01_wzm   Contig: NODE_2 (94392-95160, - strand)  Cov: 100.00%  ID: 100.00%
        O1/O2v2_02_wzt   Contig: NODE_2 (93652-94393, - strand)  Cov: 100.00%  ID:  99.19%
        O1/O2v2_03_wbbM  Contig: NODE_2 (91741-93637, - strand)  Cov: 100.00%  ID:  98.58%
        O1/O2v2_04_glf   Contig: NODE_2 (90571-91726, - strand)  Cov: 100.00%  ID:  99.22%
        O1/O2v2_05_wbbN  Contig: NODE_2 (89681-90575, - strand)  Cov: 100.00%  ID:  98.32%
        O1/O2v2_06_wbbO  Contig: NODE_2 (88538-89669, - strand)  Cov: 100.00%  ID:  99.20%
        O1/O2v2_07_kfoC  Contig: NODE_2 (87234-88443, - strand)  Cov: 100.00%  ID:  98.76%
        O1/O2v2_08_gmlC  Contig: NODE_2 (85704-87165, + strand)  Cov: 100.00%  ID:  97.95%
        O1/O2v2_09_gmlB  Contig: NODE_2 (84722-85703, + strand)  Cov: 100.00%  ID:  99.08%
        O1/O2v2_10_gmlA  Contig: NODE_2 (84348-84726, + strand)  Cov: 100.00%  ID: 100.00%

    Expected genes outside locus: 0 / 10 (0%)

    Missing expected genes: 0 / 10 (0%)

    Other genes in locus: 0

    Other genes outside locus: 0

    wzc allele: Not found
    wzi allele: Not found