Mercurial > repos > thanhlv > kaptive

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"planemo upload for repository https://github.com/quadram-institute-bioscience/galaxy-tools/tree/master/tools/kaptive commit f07ab842192ee3d9d1cc46c1de3c542213152a31-dirty"
author thanhlv
date Tue, 19 Oct 2021 09:32:23 +0000
parents 3e11d50307ce
children
Ignore whitespace changes - Everywhere: Within whitespace: At end of lines:
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3e11d50307ce "planemo upload for repository https://github.com/quadram-institute-bioscience/galaxy-tools/tree/master/tools/kaptive commit fbfc04c5de0c8a92a69b30fdaec4929f95e8cc3d-dirty"
thanhlv
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1
3e11d50307ce "planemo upload for repository https://github.com/quadram-institute-bioscience/galaxy-tools/tree/master/tools/kaptive commit fbfc04c5de0c8a92a69b30fdaec4929f95e8cc3d-dirty"
thanhlv
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2 Assembly: exact_match
3e11d50307ce "planemo upload for repository https://github.com/quadram-institute-bioscience/galaxy-tools/tree/master/tools/kaptive commit fbfc04c5de0c8a92a69b30fdaec4929f95e8cc3d-dirty"
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3 ---------------------
3e11d50307ce "planemo upload for repository https://github.com/quadram-institute-bioscience/galaxy-tools/tree/master/tools/kaptive commit fbfc04c5de0c8a92a69b30fdaec4929f95e8cc3d-dirty"
thanhlv
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4 Best match locus: O2v2
3e11d50307ce "planemo upload for repository https://github.com/quadram-institute-bioscience/galaxy-tools/tree/master/tools/kaptive commit fbfc04c5de0c8a92a69b30fdaec4929f95e8cc3d-dirty"
thanhlv
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5 Match confidence: Very high
3e11d50307ce "planemo upload for repository https://github.com/quadram-institute-bioscience/galaxy-tools/tree/master/tools/kaptive commit fbfc04c5de0c8a92a69b30fdaec4929f95e8cc3d-dirty"
thanhlv
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6 Problems: None
3e11d50307ce "planemo upload for repository https://github.com/quadram-institute-bioscience/galaxy-tools/tree/master/tools/kaptive commit fbfc04c5de0c8a92a69b30fdaec4929f95e8cc3d-dirty"
thanhlv
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7 Coverage: 100.00%
3e11d50307ce "planemo upload for repository https://github.com/quadram-institute-bioscience/galaxy-tools/tree/master/tools/kaptive commit fbfc04c5de0c8a92a69b30fdaec4929f95e8cc3d-dirty"
thanhlv
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8 Identity: 98.43%
3e11d50307ce "planemo upload for repository https://github.com/quadram-institute-bioscience/galaxy-tools/tree/master/tools/kaptive commit fbfc04c5de0c8a92a69b30fdaec4929f95e8cc3d-dirty"
thanhlv
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9 Length discrepancy: 0 bp
3e11d50307ce "planemo upload for repository https://github.com/quadram-institute-bioscience/galaxy-tools/tree/master/tools/kaptive commit fbfc04c5de0c8a92a69b30fdaec4929f95e8cc3d-dirty"
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10
3e11d50307ce "planemo upload for repository https://github.com/quadram-institute-bioscience/galaxy-tools/tree/master/tools/kaptive commit fbfc04c5de0c8a92a69b30fdaec4929f95e8cc3d-dirty"
thanhlv
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11 Locus assembly pieces:
3e11d50307ce "planemo upload for repository https://github.com/quadram-institute-bioscience/galaxy-tools/tree/master/tools/kaptive commit fbfc04c5de0c8a92a69b30fdaec4929f95e8cc3d-dirty"
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12 NODE_2 (84349-95160, - strand) ATGAAG...TGGCAT (10812 bp)
3e11d50307ce "planemo upload for repository https://github.com/quadram-institute-bioscience/galaxy-tools/tree/master/tools/kaptive commit fbfc04c5de0c8a92a69b30fdaec4929f95e8cc3d-dirty"
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13
3e11d50307ce "planemo upload for repository https://github.com/quadram-institute-bioscience/galaxy-tools/tree/master/tools/kaptive commit fbfc04c5de0c8a92a69b30fdaec4929f95e8cc3d-dirty"
thanhlv
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14 Expected genes in locus: 10 / 10 (100%)
3e11d50307ce "planemo upload for repository https://github.com/quadram-institute-bioscience/galaxy-tools/tree/master/tools/kaptive commit fbfc04c5de0c8a92a69b30fdaec4929f95e8cc3d-dirty"
thanhlv
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15 O1/O2v2_01_wzm Contig: NODE_2 (94392-95160, - strand) Cov: 100.00% ID: 100.00%
3e11d50307ce "planemo upload for repository https://github.com/quadram-institute-bioscience/galaxy-tools/tree/master/tools/kaptive commit fbfc04c5de0c8a92a69b30fdaec4929f95e8cc3d-dirty"
thanhlv
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16 O1/O2v2_02_wzt Contig: NODE_2 (93652-94393, - strand) Cov: 100.00% ID: 99.19%
3e11d50307ce "planemo upload for repository https://github.com/quadram-institute-bioscience/galaxy-tools/tree/master/tools/kaptive commit fbfc04c5de0c8a92a69b30fdaec4929f95e8cc3d-dirty"
thanhlv
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17 O1/O2v2_03_wbbM Contig: NODE_2 (91741-93637, - strand) Cov: 100.00% ID: 98.58%
3e11d50307ce "planemo upload for repository https://github.com/quadram-institute-bioscience/galaxy-tools/tree/master/tools/kaptive commit fbfc04c5de0c8a92a69b30fdaec4929f95e8cc3d-dirty"
thanhlv
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18 O1/O2v2_04_glf Contig: NODE_2 (90571-91726, - strand) Cov: 100.00% ID: 99.22%
3e11d50307ce "planemo upload for repository https://github.com/quadram-institute-bioscience/galaxy-tools/tree/master/tools/kaptive commit fbfc04c5de0c8a92a69b30fdaec4929f95e8cc3d-dirty"
thanhlv
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19 O1/O2v2_05_wbbN Contig: NODE_2 (89681-90575, - strand) Cov: 100.00% ID: 98.32%
3e11d50307ce "planemo upload for repository https://github.com/quadram-institute-bioscience/galaxy-tools/tree/master/tools/kaptive commit fbfc04c5de0c8a92a69b30fdaec4929f95e8cc3d-dirty"
thanhlv
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20 O1/O2v2_06_wbbO Contig: NODE_2 (88538-89669, - strand) Cov: 100.00% ID: 99.20%
3e11d50307ce "planemo upload for repository https://github.com/quadram-institute-bioscience/galaxy-tools/tree/master/tools/kaptive commit fbfc04c5de0c8a92a69b30fdaec4929f95e8cc3d-dirty"
thanhlv
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21 O1/O2v2_07_kfoC Contig: NODE_2 (87234-88443, - strand) Cov: 100.00% ID: 98.76%
3e11d50307ce "planemo upload for repository https://github.com/quadram-institute-bioscience/galaxy-tools/tree/master/tools/kaptive commit fbfc04c5de0c8a92a69b30fdaec4929f95e8cc3d-dirty"
thanhlv
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22 O1/O2v2_08_gmlC Contig: NODE_2 (85704-87165, + strand) Cov: 100.00% ID: 97.95%
3e11d50307ce "planemo upload for repository https://github.com/quadram-institute-bioscience/galaxy-tools/tree/master/tools/kaptive commit fbfc04c5de0c8a92a69b30fdaec4929f95e8cc3d-dirty"
thanhlv
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23 O1/O2v2_09_gmlB Contig: NODE_2 (84722-85703, + strand) Cov: 100.00% ID: 99.08%
3e11d50307ce "planemo upload for repository https://github.com/quadram-institute-bioscience/galaxy-tools/tree/master/tools/kaptive commit fbfc04c5de0c8a92a69b30fdaec4929f95e8cc3d-dirty"
thanhlv
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24 O1/O2v2_10_gmlA Contig: NODE_2 (84348-84726, + strand) Cov: 100.00% ID: 100.00%
3e11d50307ce "planemo upload for repository https://github.com/quadram-institute-bioscience/galaxy-tools/tree/master/tools/kaptive commit fbfc04c5de0c8a92a69b30fdaec4929f95e8cc3d-dirty"
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25
3e11d50307ce "planemo upload for repository https://github.com/quadram-institute-bioscience/galaxy-tools/tree/master/tools/kaptive commit fbfc04c5de0c8a92a69b30fdaec4929f95e8cc3d-dirty"
thanhlv
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26 Expected genes outside locus: 0 / 10 (0%)
3e11d50307ce "planemo upload for repository https://github.com/quadram-institute-bioscience/galaxy-tools/tree/master/tools/kaptive commit fbfc04c5de0c8a92a69b30fdaec4929f95e8cc3d-dirty"
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3e11d50307ce "planemo upload for repository https://github.com/quadram-institute-bioscience/galaxy-tools/tree/master/tools/kaptive commit fbfc04c5de0c8a92a69b30fdaec4929f95e8cc3d-dirty"
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28 Missing expected genes: 0 / 10 (0%)
3e11d50307ce "planemo upload for repository https://github.com/quadram-institute-bioscience/galaxy-tools/tree/master/tools/kaptive commit fbfc04c5de0c8a92a69b30fdaec4929f95e8cc3d-dirty"
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3e11d50307ce "planemo upload for repository https://github.com/quadram-institute-bioscience/galaxy-tools/tree/master/tools/kaptive commit fbfc04c5de0c8a92a69b30fdaec4929f95e8cc3d-dirty"
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30 Other genes in locus: 0
3e11d50307ce "planemo upload for repository https://github.com/quadram-institute-bioscience/galaxy-tools/tree/master/tools/kaptive commit fbfc04c5de0c8a92a69b30fdaec4929f95e8cc3d-dirty"
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31
3e11d50307ce "planemo upload for repository https://github.com/quadram-institute-bioscience/galaxy-tools/tree/master/tools/kaptive commit fbfc04c5de0c8a92a69b30fdaec4929f95e8cc3d-dirty"
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32 Other genes outside locus: 0
3e11d50307ce "planemo upload for repository https://github.com/quadram-institute-bioscience/galaxy-tools/tree/master/tools/kaptive commit fbfc04c5de0c8a92a69b30fdaec4929f95e8cc3d-dirty"
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3e11d50307ce "planemo upload for repository https://github.com/quadram-institute-bioscience/galaxy-tools/tree/master/tools/kaptive commit fbfc04c5de0c8a92a69b30fdaec4929f95e8cc3d-dirty"
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34 wzc allele: Not found
3e11d50307ce "planemo upload for repository https://github.com/quadram-institute-bioscience/galaxy-tools/tree/master/tools/kaptive commit fbfc04c5de0c8a92a69b30fdaec4929f95e8cc3d-dirty"
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35 wzi allele: Not found
3e11d50307ce "planemo upload for repository https://github.com/quadram-institute-bioscience/galaxy-tools/tree/master/tools/kaptive commit fbfc04c5de0c8a92a69b30fdaec4929f95e8cc3d-dirty"
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