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changeset 1:d66527cf7d25 draft

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planemo upload for repository https://github.com/quadram-institute-bioscience/galaxy-tools/tree/master/tools/bracken commit 04614245b0b770af51985987051668dac7ca0230-dirty
author thanhlv
date Tue, 21 May 2019 12:42:49 -0400
parents 9cf44596402a
children 2bd5a88cd70d
files est-abundance.xml
diffstat 1 files changed, 6 insertions(+), 7 deletions(-) [+]
line wrap: on
line diff
--- a/est-abundance.xml	Mon Apr 01 06:52:24 2019 -0400
+++ b/est-abundance.xml	Tue May 21 12:42:49 2019 -0400
@@ -5,18 +5,17 @@
     </macros>
     <expand macro="requirements" />
     <command detect_errors="exit_code"><![CDATA[
-    est_abundance.py \
-    -i $input \
-    -k $kmer_distr \
-    -l $level \
-    -t $threshold \
-    -o $report
+    est_abundance.py 
+    -i '$input' 
+    -k $kmer_distr 
+    -l $level 
+    -t $threshold 
+    -o '$report'
     ]]>
     </command>
     
     <inputs>
         <param name="input" type="data" format="tabular" label="Kraken report file" />
-        <!-- DATABASE INPUT-->
         <param label="Select a Kmer distribution" name="kmer_distr" type="select">
             <options from_data_table="bracken_databases">
                 <validator message="No database is available" type="no_options" />