Mercurial > repos > thanhlv > bracken

changeset 3:8ae232fe9bc0 draft

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planemo upload for repository https://github.com/quadram-institute-bioscience/galaxy-tools/tree/master/tools/bracken commit 6d4991990664d00e33783c94f7f08d13f47c60e2-dirty
author thanhlv
date Thu, 25 May 2023 14:15:27 +0000
parents 2bd5a88cd70d
children 6115a1fb8db5
files est-abundance.xml
diffstat 1 files changed, 3 insertions(+), 2 deletions(-) [+]
line wrap: on
line diff
--- a/est-abundance.xml	Thu May 25 13:42:42 2023 +0000
+++ b/est-abundance.xml	Thu May 25 14:15:27 2023 +0000
@@ -5,8 +5,9 @@
     </macros>
     <expand macro="requirements" />
     <command detect_errors="exit_code"><![CDATA[
-    bracken \\ 
-    -i '$input' 
+    bracken 
+    -i '$input'
+    -r 'read_len'
     -d '$kmer_distr.fields.path' 
     -l $level 
     -t $threshold