Mercurial > repos > thanhlv > bin3c
changeset 17:1971cfa55ada draft
planemo upload for repository https://github.com/quadram-institute-bioscience/galaxy-tools/tree/master/tools/bin3C commit 9f4ab03111185c7e20aaf669586278744713eee4
author | thanhlv |
---|---|
date | Mon, 21 Oct 2019 05:26:18 -0400 |
parents | cdfc397e7b0f |
children | 0e9275cd89a6 |
files | mkmap.xml |
diffstat | 1 files changed, 2 insertions(+), 1 deletions(-) [+] |
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--- a/mkmap.xml Thu Oct 17 12:41:47 2019 -0400 +++ b/mkmap.xml Mon Oct 21 05:26:18 2019 -0400 @@ -6,6 +6,7 @@ <expand macro="requirements" /> <expand macro="version_command" /> <command detect_errors="exit_code"><![CDATA[ + samtools sort -@ \${GALAXY_SLOTS:-1} -o sorted.bam -n $bam && bin3C mkmap --min-extent $min_extent --min-reflen $min_reflen @@ -22,7 +23,7 @@ -e $enzyme #end for #end if - $ref $bam out + $ref sorted.bam out ]]></command> <inputs>