Mercurial > repos > thanhlv > bin3c

changeset 1:15d48ce4e275 draft

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planemo upload for repository https://github.com/quadram-institute-bioscience/galaxy-tools/tree/master/tools/bin3C commit 0c7c0f6a955950df029477a0532268bf2b30d269-dirty
author thanhlv
date Mon, 30 Sep 2019 12:16:50 -0400
parents eb31dd5dc3ed
children 3dc88c0973db
files cluster.xml mkmap.xml
diffstat 2 files changed, 10 insertions(+), 6 deletions(-) [+]
line wrap: on
line diff
--- a/cluster.xml	Thu Sep 26 12:12:13 2019 -0400
+++ b/cluster.xml	Mon Sep 30 12:16:50 2019 -0400
@@ -38,9 +38,14 @@
     </inputs>
 
     <outputs>
-        <data name="output" label="${tool.name} on ${on_string} Output">
-            <discover_datasets pattern="__designation_and_ext__" directory="out" />
-        </data>
+        <data name="log" format="text" label="{tool.name} on ${on_string} Log" from_work_dir="out/bin3C.log"/>
+        <data name="clustering_mcl" format="binary" label="{tool.name} on ${on_string} 	Clustering solution in MCL format" from_work_dir="out/clustering.mcl"/>
+        <data name="clustering_p_gz" format="binary" label="{tool.name} on ${on_string} Clustering solution as a picked python dictionary" from_work_dir="out/clustering.p.gz"/>
+        <data name="clustering_plot" format="png" label="{tool.name} on ${on_string} Heatmap of the contact map after clustering" from_work_dir="out/cluster_plot.png"/>
+        <data name="clustering_csv" format="tabular" label="{tool.name} on ${on_string} A per-cluster report of various statistics" from_work_dir="out/cluster_report.csv"/>
+        <data name="cm_graph_edges" format="binary" label="{tool.name} on ${on_string} The graph used in clustering in edge list format" from_work_dir="out/cm_graph.edges"/>
+        <data name="cm_graph_tree" format="text" label="{tool.name} on ${on_string} Infomap clustering output" from_work_dir="out/cm_graph.tree"/>
+        <data name="fasta" format="fasta" label="{tool.name} on ${on_string} Per-cluster multi-fasta sequences" from_work_dir="out/infomap.log"/> 
     </outputs>
 
     <tests>
--- a/mkmap.xml	Thu Sep 26 12:12:13 2019 -0400
+++ b/mkmap.xml	Mon Sep 30 12:16:50 2019 -0400
@@ -45,9 +45,8 @@
     </inputs>
 
     <outputs>
-        <data name="output" label="${tool.name} on ${on_string} Output">
-            <discover_datasets pattern="__designation_and_ext__" directory="out" />
-        </data>
+        <data name="contact_map" format="gz" label="{tool.name} on ${on_string} Contact map" from_work_dir="out/contact_map.p.gz"/>
+        <data name="log" format="text" label="{tool.name} on ${on_string} Log" from_work_dir="out/bin3C.log"/>
     </outputs>
 
     <tests>