Mercurial > repos > thanhlv > bin3c

diff mkmap.xml @ 10:59f01b08b3e1 draft

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planemo upload for repository https://github.com/quadram-institute-bioscience/galaxy-tools/tree/master/tools/bin3C commit 70fbc98b2ff2be134400e4dc0df1ed60458d0604-dirty
author thanhlv
date Thu, 03 Oct 2019 08:54:55 -0400
parents 5a53c997fc3e
children cc6f22df0a68
line wrap: on
line diff
--- a/mkmap.xml	Thu Oct 03 08:40:29 2019 -0400
+++ b/mkmap.xml	Thu Oct 03 08:54:55 2019 -0400
@@ -18,8 +18,7 @@
         --min-mapq $min_mapq
         --strong $strong
         #if str($neb_name) != "":
-            #set $_neb_name = ' -e '.join( str( $neb_name ).split( ';' ) )
-        -e ${_neb_name}
+            -e #echo ' -e '.join(str( $neb_name ).split( ';' ))#
         #end if
         $ref $bam out
     ]]></command>
@@ -44,8 +43,8 @@
     </inputs>
 
     <outputs>
-        <data name="contact_map" format="tar.gz" label="{tool.name} on ${on_string} Contact map" from_work_dir="out/contact_map.p.gz"/>
-        <data name="log" format="text" label="{tool.name} on ${on_string} Log" from_work_dir="out/bin3C.log"/>
+        <data name="contact_map" format="tar.gz" label="${tool.name} on ${on_string} Contact map" from_work_dir="out/contact_map.p.gz"/>
+        <data name="log" format="text" label="${tool.name} on ${on_string} Log" from_work_dir="out/bin3C.log"/>
     </outputs>
 
     <tests>