comparison mkmap.xml @ 10:59f01b08b3e1 draft

planemo upload for repository https://github.com/quadram-institute-bioscience/galaxy-tools/tree/master/tools/bin3C commit 70fbc98b2ff2be134400e4dc0df1ed60458d0604-dirty

9:5a53c997fc3e

        --bin-size $bin_size
        --min-insert $min_insert
        --min-mapq $min_mapq
        --strong $strong
        #if str($neb_name) != "":
            #set $_neb_name = ' -e '.join( str( $neb_name ).split( ';' ) )
        -e ${_neb_name}
        #end if
        $ref $bam out
    ]]></command>
    
    <inputs>

            <help><![CDATA[Use ; to separate multiple enzymes e.g enzyme1;enzyme2]]> </help>
        </param>
    </inputs>

    <outputs>
        <data name="contact_map" format="tar.gz" label="{tool.name} on ${on_string} Contact map" from_work_dir="out/contact_map.p.gz"/>
        <data name="log" format="text" label="{tool.name} on ${on_string} Log" from_work_dir="out/bin3C.log"/>
    </outputs>

    <tests>
        <test>
        </test>

10:59f01b08b3e1

        --bin-size $bin_size
        --min-insert $min_insert
        --min-mapq $min_mapq
        --strong $strong
        #if str($neb_name) != "":
            -e #echo ' -e '.join(str( $neb_name ).split( ';' ))#
        #end if
        $ref $bam out
    ]]></command>
    
    <inputs>

            <help><![CDATA[Use ; to separate multiple enzymes e.g enzyme1;enzyme2]]> </help>
        </param>
    </inputs>

    <outputs>
        <data name="contact_map" format="tar.gz" label="${tool.name} on ${on_string} Contact map" from_work_dir="out/contact_map.p.gz"/>
        <data name="log" format="text" label="${tool.name} on ${on_string} Log" from_work_dir="out/bin3C.log"/>
    </outputs>

    <tests>
        <test>
        </test>