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planemo upload for repository https://github.com/SynBioDex/SBOL-utilities commit 51525bc3c90f9bdd38e26e74e6a8761306b3a442
author tduigou
date Mon, 15 May 2023 07:38:12 +0000
parents 6801278362ed
children
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6801278362ed planemo upload for repository https://github.com/SynBioDex/SBOL-utilities commit eadd9bb9edbc70361b9e8d7900e6743b37142ee3
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1 <tool id="sbol3_diff" name="SBOL3 DIFF" version="@TOOL_VERSION@+galaxy@VERSION_SUFFIX@" profile="21.09" license="MIT">
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2 <description>Computes the difference between two SBOL3 documents</description>
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3 <macros>
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4 <token name="@VERSION_SUFFIX@">0</token>
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3b533479e877 planemo upload for repository https://github.com/SynBioDex/SBOL-utilities commit 51525bc3c90f9bdd38e26e74e6a8761306b3a442
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5 <token name="@TOOL_VERSION@">1.0a17</token>
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6 </macros>
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7 <requirements>
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8 <requirement type="package" version="@TOOL_VERSION@">sbol-utilities</requirement>
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9 </requirements>
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10 <stdio>
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11 <exit_code range="2:" level="fatal" />
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12 <exit_code range="0" level="warning" description="No differences detected" />
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13 <exit_code range="1" level="warning" description="Differences detected" />
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14 </stdio>
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15 <command><![CDATA[
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16 ln -s '$sbol3_in_1' '$sbol3_in_1.name' &&
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17 ln -s '$sbol3_in_2' '$sbol3_in_2.name' &&
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18 sbol-diff '$sbol3_in_1.name' '$sbol3_in_2.name' > '$diff_out'
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19 ]]></command>
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20 <inputs>
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21 <param name="sbol3_in_1" type="data" format="nt" label="First input SBOL3" />
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22 <param name="sbol3_in_2" type="data" format="nt" label="Second input SBOL3" />
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23 </inputs>
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24 <outputs>
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25 <data name="diff_out" format="txt" label="${tool.name}: ${sbol3_in_1.name} - ${sbol3_in_2.name}"/>
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26 </outputs>
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27 <tests>
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28 <test>
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29 <!-- test 1: check if identical output is produced -->
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30 <param name="sbol3_in_1" value="simple_library.nt" />
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31 <param name="sbol3_in_2" value="expanded_simple_library.nt" />
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32 <output name="diff_out" file="sbol3_diff_out.txt" ftype="txt" compare="diff" sort="true"/>
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33 </test>
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34 </tests>
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35 <help><![CDATA[
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36 SBOL3 DIFF
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37 ==========
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38
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39 Input
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40 -----
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41
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42 Required:
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43
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44 * **First input SBOL3**\
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45 * **Second input SBOL3**\
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46
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47 Output
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48 ------
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49
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50 * **Output**\ : Output with differences between two SBOL3 files.
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51 ]]></help>
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52 <creator>
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53 <organization name="BioRetroSynth" url="https://github.com/brsynth"/>
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54 </creator>
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55 <citations>
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56 <citation type="doi">10.1021/acssynbio.1c00188</citation>
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57 </citations>
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58 </tool>