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annotate sbol3_diff.xml @ 0:2d9ed070ea20 draft

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author tduigou
date Mon, 19 Dec 2022 10:11:28 +0000
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1 <tool id="sbol3_diff" name="SBOL3 DIFF" version="@TOOL_VERSION@+galaxy@VERSION_SUFFIX@" profile="21.09">
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2 <description>Computes the difference between two SBOL3 documents</description>
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3 <macros>
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4 <token name="@VERSION_SUFFIX@">0</token>
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5 <token name="@TOOL_VERSION@">1.0a16</token>
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6 </macros>
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7 <requirements>
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8 <requirement type="package" version="@TOOL_VERSION@">sbol-utilities</requirement>
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9 </requirements>
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10 <stdio>
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11 <exit_code range="2:" level="fatal" />
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12 <exit_code range="0" level="warning" description="No differences detected" />
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13 <exit_code range="1" level="warning" description="Differences detected" />
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14 </stdio>
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15 <command><![CDATA[
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16 ln -s '$sbol3_in_1' '$sbol3_in_1.name' &&
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17 ln -s '$sbol3_in_2' '$sbol3_in_2.name' &&
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18 sbol-diff '$sbol3_in_1.name' '$sbol3_in_2.name' > '$diff_out'
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19 ]]></command>
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20 <inputs>
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21 <param name="sbol3_in_1" type="data" format="nt" label="First input SBOL3" />
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22 <param name="sbol3_in_2" type="data" format="nt" label="Second input SBOL3" />
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23 </inputs>
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24 <outputs>
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25 <data name="diff_out" format="txt" label="${tool.name}: ${sbol3_in_1.name} - ${sbol3_in_2.name}"/>
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26 </outputs>
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27 <tests>
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28 <test>
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29 <!-- test 1: check if identical output is produced -->
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30 <param name="sbol3_in_1" value="simple_library.nt" />
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31 <param name="sbol3_in_2" value="expanded_simple_library.nt" />
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32 <output name="diff_out" file="sbol3_diff_out.txt" ftype="txt" compare="diff" sort="true"/>
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33 </test>
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34 </tests>
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35 <help><![CDATA[
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36 SBOL3 DIFF
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37 ================
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38
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39 Input
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40 -----
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41
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42 Required:
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43
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44 * **First input SBOL3**\
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45 * **Second input SBOL3**\
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46
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47 Output
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48 ------
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49
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50 * **Output**\ : Output with differences between two SBOL3 files.
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51
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52 Project Links
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53 ------------------
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54
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55 * `GitHub <https://github.com/SynBioDex/SBOL-utilities>`_
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56
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57 License
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58 -------
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59
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60 * `MIT <https://github.com/SynBioDex/SBOL-utilities/blob/develop/LICENSE.txt>`_
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61
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62 Acknowledgments
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63 ---------------
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64
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65 * Kenza BAZI-KABBAJ
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66
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67 ]]></help>
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68 <creator>
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69 <person givenName="Jacob" familyName="Beal" identifier="https://orcid.org/0000-0002-1663-5102" />
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70 </creator>
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71 </tool>