Mercurial > repos > tduigou > save_to_db
changeset 1:6854ac8c5d2b draft
planemo upload for repository https://github.com/brsynth commit 6ae809b563b40bcdb6be2e74fe2a84ddad5484ae
| author | tduigou |
|---|---|
| date | Thu, 24 Apr 2025 12:02:14 +0000 |
| parents | 034686b5bc15 |
| children | 81e9e1d803fa |
| files | save_to_db.xml verification.py |
| diffstat | 2 files changed, 2 insertions(+), 2 deletions(-) [+] |
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--- a/save_to_db.xml Thu Apr 24 09:56:36 2025 +0000 +++ b/save_to_db.xml Thu Apr 24 12:02:14 2025 +0000 @@ -30,7 +30,7 @@ <param name="db_uri" type="text" label="Database Connection URI" help="postgresql+psycopg2://username:password@db_container_name:port/database" optional="false" /> </inputs> <outputs> - <data name="output" format="txt" label="text raport" /> + <data name="output" format="txt" label="saving report" /> </outputs> <tests> <!--python save_to_db.py -input 'test-data/p7_L7Ae-Weiss.gb,test-data/p6_Nt-IgKLsequence.gb,test-data/p6_Kozak-ATG.gb,test-data/p4_Kt-L7Ae-Weiss.gb,test-data/HC_Amp_ccdB.gb' -sequence_column 'sequence' -annotation_column 'annotation' -db_uri 'postgresql://postgres:RK17@localhost:5432/test_fragments_db' -table 'sample' -fragment_column 'fragment' -output 'test-data/test_raport.txt'
--- a/verification.py Thu Apr 24 09:56:36 2025 +0000 +++ b/verification.py Thu Apr 24 12:02:14 2025 +0000 @@ -1,6 +1,6 @@ from sqlalchemy import create_engine, text -db_uri = "postgresql://postgres:RK17@localhost:5432/test_fragments_db" +db_uri = "postgresql://postgres:RK17@localhost:5432/test_fragments_db" #adapt with your URI's DB engine = create_engine(db_uri) with engine.connect() as conn: