Mercurial > repos > tduigou > parameters_maystro

annotate test-data/test_json.json @ 1:34135dac85b0 draft default tip

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planemo upload for repository https://github.com/brsynth commit d8cc8b87fdb0374745b5420f2da7f08ae905c222-dirty
author tduigou
date Wed, 16 Jul 2025 14:28:21 +0000
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34135dac85b0 planemo upload for repository https://github.com/brsynth commit d8cc8b87fdb0374745b5420f2da7f08ae905c222-dirty
tduigou
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diff changeset
1 {
34135dac85b0 planemo upload for repository https://github.com/brsynth commit d8cc8b87fdb0374745b5420f2da7f08ae905c222-dirty
tduigou
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2 "avoid_patterns": "BsaI_site\nBsmBI_site\nBbsI_site\nSapI_site\n8x1mer\n5x3mer\n9x2mer",
34135dac85b0 planemo upload for repository https://github.com/brsynth commit d8cc8b87fdb0374745b5420f2da7f08ae905c222-dirty
tduigou
parents:
diff changeset
3 "hairpin_constraints": "stem_size=20, hairpin_window=200",
34135dac85b0 planemo upload for repository https://github.com/brsynth commit d8cc8b87fdb0374745b5420f2da7f08ae905c222-dirty
tduigou
parents:
diff changeset
4 "gc_constraints": "mini=0.3, maxi=0.7, window=100\nmini=0.1, maxi=0.9, window=100",
34135dac85b0 planemo upload for repository https://github.com/brsynth commit d8cc8b87fdb0374745b5420f2da7f08ae905c222-dirty
tduigou
parents:
diff changeset
5 "kmer_size": "15",
34135dac85b0 planemo upload for repository https://github.com/brsynth commit d8cc8b87fdb0374745b5420f2da7f08ae905c222-dirty
tduigou
parents:
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6 "execution": "true",
34135dac85b0 planemo upload for repository https://github.com/brsynth commit d8cc8b87fdb0374745b5420f2da7f08ae905c222-dirty
tduigou
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7 "db_uri": "postgresql://postgres:RK17@localhost:5432/test_fragments_db",
34135dac85b0 planemo upload for repository https://github.com/brsynth commit d8cc8b87fdb0374745b5420f2da7f08ae905c222-dirty
tduigou
parents:
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8 "table": "sample",
34135dac85b0 planemo upload for repository https://github.com/brsynth commit d8cc8b87fdb0374745b5420f2da7f08ae905c222-dirty
tduigou
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9 "fragment_column": "fragment",
34135dac85b0 planemo upload for repository https://github.com/brsynth commit d8cc8b87fdb0374745b5420f2da7f08ae905c222-dirty
tduigou
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10 "sequence_column": "sequence",
34135dac85b0 planemo upload for repository https://github.com/brsynth commit d8cc8b87fdb0374745b5420f2da7f08ae905c222-dirty
tduigou
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11 "annotation_column": "annotation"
34135dac85b0 planemo upload for repository https://github.com/brsynth commit d8cc8b87fdb0374745b5420f2da7f08ae905c222-dirty
tduigou
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12 }