Mercurial > repos > tduigou > cloning_simulation
changeset 9:eaff3028ba07 draft
planemo upload for repository https://github.com/Edinburgh-Genome-Foundry/DnaCauldron/tree/master commit 6ae809b563b40bcdb6be2e74fe2a84ddad5484ae
| author | tduigou |
|---|---|
| date | Mon, 26 May 2025 09:43:40 +0000 |
| parents | 07e902da89ad |
| children | 0be569bd5443 |
| files | cloning_simulation.py test-data/2-step_golden_gate_parts/2-step-golden_gate_plan.csv test-data/BASIC_assembly_dataset/basic_assembly.csv test-data/lcr_assembly_dataset/assembly_plan.csv |
| diffstat | 4 files changed, 2 insertions(+), 4 deletions(-) [+] |
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--- a/cloning_simulation.py Mon May 26 09:23:51 2025 +0000 +++ b/cloning_simulation.py Mon May 26 09:43:40 2025 +0000 @@ -85,7 +85,8 @@ assembly_plan = dnacauldron.AssemblyPlan.from_spreadsheet( name="auto_from_filename", path=new_csvname, - header=[0], + dataframe=None, + header=None, assembly_class=assembly_class ) if enzyme != 'auto':
--- a/test-data/2-step_golden_gate_parts/2-step-golden_gate_plan.csv Mon May 26 09:23:51 2025 +0000 +++ b/test-data/2-step_golden_gate_parts/2-step-golden_gate_plan.csv Mon May 26 09:43:40 2025 +0000 @@ -1,4 +1,3 @@ -ID,part1,part2,part3,part4,part5,part6 construct_3,construct_1,part_L,part_J,part_K,, construct_4,construct_2,part_L,part_J,part_K,, construct_1,part_A,part_B,part_C,part_D,part_E,part_F
--- a/test-data/BASIC_assembly_dataset/basic_assembly.csv Mon May 26 09:23:51 2025 +0000 +++ b/test-data/BASIC_assembly_dataset/basic_assembly.csv Mon May 26 09:43:40 2025 +0000 @@ -1,4 +1,3 @@ -ID,parts,,,,,,,,,,, L2RBS-1P,L2RBS-1P_fwd,L2RBS-1P_adapter,,,,,,,,,, LMA-S,LMA-S_fwd,LMA-S_adapter,,,,,,,,,, L1RBS-xS,L1RBS-xS_fwd,L1RBS-xS_adapter,,,,,,,,,,
--- a/test-data/lcr_assembly_dataset/assembly_plan.csv Mon May 26 09:23:51 2025 +0000 +++ b/test-data/lcr_assembly_dataset/assembly_plan.csv Mon May 26 09:43:40 2025 +0000 @@ -1,3 +1,2 @@ -construct,parts,,,,,,,,,,,,, Construct1,RFP_GFP_BO_10232,oligo_indicator: _BO_,RFP_GFP_BO_10234,RFP_GFP_BO_10236,RFP_GFP_BO_10244,RFP_GFP_BO_10268,RFP_GFP_BO_10281,p1_mRFP1-part1,p2_mRFP1-part2,p3_mRFP1-part3,p4_sfGFP-part1,p5_sfGFP-part2,p6_sfGFP-part3,p7_backbone Construct2_flawed,RFP_GFP_BO_10232,RFP_GFP_BO_10233,RFP_GFP_BO_10244,RFP_GFP_BO_10268,RFP_GFP_BO_10281,p1_mRFP1-part1,p2_mRFP1-part2,p3_mRFP1-part3,p4_sfGFP-part1,p5_sfGFP-part2,p6_sfGFP-part3,p7_backbone,,