Mercurial > repos > tduigou > cloning_simulation

changeset 12:556649b3f9bb draft

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planemo upload for repository https://github.com/Edinburgh-Genome-Foundry/DnaCauldron/tree/master commit 6ae809b563b40bcdb6be2e74fe2a84ddad5484ae
author tduigou
date Mon, 26 May 2025 09:57:55 +0000
parents be6889ab2df8
children 7d1778f5e164
files cloning_simulation.py test-data/2-step_golden_gate_parts/2-step-golden_gate_plan.csv
diffstat 2 files changed, 3 insertions(+), 1 deletions(-) [+]
line wrap: on
line diff
--- a/cloning_simulation.py	Mon May 26 09:54:05 2025 +0000
+++ b/cloning_simulation.py	Mon May 26 09:57:55 2025 +0000
@@ -81,12 +81,13 @@
     
     new_csvname = "assambly.csv"
     os.rename(csv_file, new_csvname)
+    print (df)
 
     assembly_plan = dnacauldron.AssemblyPlan.from_spreadsheet(
         name="auto_from_filename",
         path=new_csvname,
         dataframe=None,
-        header=[0],
+        header=None,
         assembly_class=assembly_class
     )
     if enzyme != 'auto':
--- a/test-data/2-step_golden_gate_parts/2-step-golden_gate_plan.csv	Mon May 26 09:54:05 2025 +0000
+++ b/test-data/2-step_golden_gate_parts/2-step-golden_gate_plan.csv	Mon May 26 09:57:55 2025 +0000
@@ -1,3 +1,4 @@
+ID,part1,part2,part3,part4,part5,part6
 construct_3,construct_1,part_L,part_J,part_K,,
 construct_4,construct_2,part_L,part_J,part_K,,
 construct_1,part_A,part_B,part_C,part_D,part_E,part_F