Mercurial > repos > tduigou > cloning_simulation

--- a/cloning_similation.xml	Fri May 16 09:41:19 2025 +0000
+++ b/cloning_similation.xml	Fri May 16 11:32:06 2025 +0000
@@ -24,7 +24,7 @@
             #set domesticated_input_paths = ""
             #set file_name_mapping_dom = ""
         #end if
-        mkdir 'outdir_zip' &&
+        mkdir 'outdir_zip' && mkdir 'outdir_gb' &&
         python '$__tool_directory__/cloning_simulation.py'
             --parts_files '$genbank_file_paths'
             --domesticated_seq '$domesticated_input_paths'
@@ -34,6 +34,7 @@
             --file_name_mapping_dom '$file_name_mapping_dom'
             --use_file_names_as_id '$adv.use_file_names_as_ids'
             --outdir_simulation 'outdir_zip'
+            --outdir_gb 'outdir_gb'
             --output_simulation 'output_zip.zip'
             --enzyme '$adv.enzyme'
             --topology '$topology'&&
@@ -61,6 +62,9 @@
     </inputs>
     <outputs>
         <data format="zip" name="output_zip" label="simulation results"/>
+        <collection name="construct_gb" type="list" label="All constrauct GenBank">
+                <discover_datasets pattern="(?P&lt;name&gt;.*).gb" format="genbank" directory="outdir_gb" />
+        </collection>
     </outputs>
     <tests>
         <!--test type2s_assembly class-->
@@ -93,6 +97,28 @@
                     </has_archive_member>
                 </assert_contents>
             </output>
+            <output_collection name="outdir_gb" type="list" count="4">
+                <element name="construct_1">
+                    <assert_contents>
+                     <has_n_lines min="20" />
+                    </assert_contents>
+                </element>
+                <element name="construct_2">
+                    <assert_contents>
+                     <has_n_lines min="20" />
+                    </assert_contents>
+                </element>
+                <element name="construct_3">
+                    <assert_contents>
+                     <has_n_lines min="20" />
+                    </assert_contents>
+                </element>
+                 <element name="construct_4">
+                    <assert_contents>
+                     <has_n_lines min="20" />
+                    </assert_contents>
+                </element>
+            </output_collection>
         </test>
         <!--test gibson_assembly class-->
         <test>
@@ -113,6 +139,23 @@
                     </has_archive_member>
                 </assert_contents>
             </output>
+            <output_collection name="outdir_gb" type="list" count="4">
+                <element name="construct_1">
+                    <assert_contents>
+                     <has_n_lines min="20" />
+                    </assert_contents>
+                </element>
+                <element name="construct_2">
+                    <assert_contents>
+                     <has_n_lines min="20" />
+                    </assert_contents>
+                </element>
+                <element name="construct_3">
+                    <assert_contents>
+                     <has_n_lines min="20" />
+                    </assert_contents>
+                </element>
+            </output_collection>
         </test>
         <!--test lcr_assembly class-->
         <test>
@@ -134,6 +177,8 @@
                     </has_archive_member>
                 </assert_contents>
             </output>
+            <output_collection name="outdir_gb" type="list" count="0">
+            </output_collection>
         </test>
         <!--test BASIC_assembly class-->
         <test>
@@ -158,6 +203,8 @@
                     </has_archive_member>
                 </assert_contents>
             </output>
+            <output_collection name="outdir_gb" type="list" count="0">
+            </output_collection>
         </test>
         <!--test biobrick_assembly class-->
         <test>
@@ -182,6 +229,8 @@
                     </has_archive_member>
                 </assert_contents>
             </output>
+            <output_collection name="outdir_gb" type="list" count="0">
+            </output_collection>
         </test>
         <!--test type2s_assembly with domesticated files-->
         <test>
@@ -217,6 +266,28 @@
                     </has_archive_member>
                 </assert_contents>
             </output>
+            <output_collection name="outdir_gb" type="list" count="4">
+                <element name="construct_1">
+                    <assert_contents>
+                     <has_n_lines min="20" />
+                    </assert_contents>
+                </element>
+                <element name="construct_2">
+                    <assert_contents>
+                     <has_n_lines min="20" />
+                    </assert_contents>
+                </element>
+                <element name="construct_3">
+                    <assert_contents>
+                     <has_n_lines min="20" />
+                    </assert_contents>
+                </element>
+                 <element name="construct_4">
+                    <assert_contents>
+                     <has_n_lines min="20" />
+                    </assert_contents>
+                </element>
+            </output_collection>
         </test>
     </tests>
--- a/cloning_simulation.py	Fri May 16 09:41:19 2025 +0000
+++ b/cloning_simulation.py	Fri May 16 11:32:06 2025 +0000
@@ -9,7 +9,7 @@
                        csv_file, assembly_type, topology,
                        file_name_mapping, file_name_mapping_dom,
                        use_file_names_as_id,
-                       outdir_simulation, output_simulation,enzyme):
+                       outdir_simulation, output_simulation,enzyme,outdir_gb):

     files_to_assembly = files_to_assembly.split(',')

@@ -108,11 +108,26 @@
                 full_path = os.path.join(root, file)
                 arcname = os.path.relpath(full_path, outdir_simulation)
                 zipf.write(full_path, arcname)
-        print("Files in the zip archive:")
-        for info in zipf.infolist():
-            print(info.filename)
+        #print("Files in the zip archive:")
+        #for info in zipf.infolist():
+            #print(info.filename)
+    with zipfile.ZipFile(output_simulation, 'r') as zipf:
+        for member in zipf.namelist():
+            # Only extract actual files inside 'all_construct_records/' (not subfolders)
+            if member.startswith("all_construct_records/") and not member.endswith("/"):
+                # Get the file name only (strip folder path)
+                filename = os.path.basename(member)
+                if not filename:
+                    continue  # skip any edge cases

-    return output_simulation
+                # Destination path directly in outdir_dir
+                target_path = os.path.join(outdir_gb, filename)
+
+                # Write the file content
+                with zipf.open(member) as source, open(target_path, "wb") as target:
+                    target.write(source.read())
+
+    return output_simulation, outdir_gb


 def parse_command_line_args():
@@ -140,6 +155,8 @@
                         help="zip output for cloning simulation results")
     parser.add_argument('--enzyme', type=str,
                         help='enzyme to use')
+    parser.add_argument("--outdir_gb", required=True,
+                        help="dir output constructs gb files")

     return parser.parse_args()

@@ -150,6 +167,6 @@
         args.parts_files, args.domesticated_seq,
         args.assembly_csv, args.assembly_plan_name, args.topology,
         args.file_name_mapping, args.file_name_mapping_dom,
-        args.use_file_names_as_id,
-        args.outdir_simulation,args.output_simulation, args.enzyme
+        args.use_file_names_as_id, args.outdir_simulation,
+        args.output_simulation, args.enzyme, args.outdir_gb
     )
\ No newline at end of file
--- /dev/null	Thu Jan 01 00:00:00 1970 +0000
+++ b/test-data/init/2-step-golden_gate_plan_simulation/2-step-golden_gate_plan_all_required_parts.txt	Fri May 16 11:32:06 2025 +0000
@@ -0,0 +1,12 @@
+part_A
+part_B
+part_C
+part_D
+part_E
+part_F
+part_G
+part_H
+part_I
+part_J
+part_K
+part_L
\ No newline at end of file
--- /dev/null	Thu Jan 01 00:00:00 1970 +0000
+++ b/test-data/init/2-step-golden_gate_plan_simulation/2-step-golden_gate_plan_constructs_level_1.csv	Fri May 16 11:32:06 2025 +0000
@@ -0,0 +1,3 @@
+construct,parts
+construct_1,part_A,part_B,part_C,part_D,part_E,part_F
+construct_2,part_A,part_G,part_H,part_I,part_F
\ No newline at end of file
--- /dev/null	Thu Jan 01 00:00:00 1970 +0000
+++ b/test-data/init/2-step-golden_gate_plan_simulation/2-step-golden_gate_plan_constructs_level_2.csv	Fri May 16 11:32:06 2025 +0000
@@ -0,0 +1,3 @@
+construct,parts
+construct_3,construct_1,part_L,part_J,part_K
+construct_4,construct_2,part_L,part_J,part_K
\ No newline at end of file
--- /dev/null	Thu Jan 01 00:00:00 1970 +0000
+++ b/test-data/init/2-step-golden_gate_plan_simulation/2-step-golden_gate_plan_simulation_stats.csv	Fri May 16 11:32:06 2025 +0000
@@ -0,0 +1,3 @@
+cancelled_assemblies: 0
+errored_assemblies: 0
+valid_assemblies: 4
\ No newline at end of file
--- /dev/null	Thu Jan 01 00:00:00 1970 +0000
+++ b/test-data/init/2-step-golden_gate_plan_simulation/2-step-golden_gate_plan_summary.csv	Fri May 16 11:32:06 2025 +0000
@@ -0,0 +1,5 @@
+assembly_name,construct_id,assembly_level,construct_size,number_of_parts,depends_on,enzymes,used_in,parts
+construct_1,construct_1,1,10366,6,,BsaI,construct_3,part_A & part_B & part_C & part_D & part_E & part_F
+construct_2,construct_2,1,6910,5,,BsaI,construct_4,part_A & part_G & part_H & part_I & part_F
+construct_3,construct_3,2,11530,4,construct_1,AarI,,construct_1 & part_L & part_J & part_K
+construct_4,construct_4,2,8074,4,construct_2,AarI,,construct_2 & part_L & part_J & part_K
Binary file test-data/init/2-step-golden_gate_plan_simulation/Report.pdf has changed
--- /dev/null	Thu Jan 01 00:00:00 1970 +0000
+++ b/test-data/init/2-step-golden_gate_plan_simulation/all_construct_records/construct_1.gb	Fri May 16 11:32:06 2025 +0000
@@ -0,0 +1,385 @@
+LOCUS       construct_1            10366 bp    DNA     circular UNK 01-JAN-1980
+DEFINITION  .
+ACCESSION   construct_1
+VERSION     construct_1
+KEYWORDS    .
+SOURCE      .
+  ORGANISM  .
+            .
+FEATURES             Location/Qualifiers
+     homology        1..4
+                     /label="CGCT"
+                     /color="#f7e8f7"
+                     /ApEinfo_fwdcolor="#f7e8f7"
+     misc_feature    9..25
+                     /label="feature"
+                     /ApEinfo_fwdcolor="#b4abac"
+     CDS             complement(223..1038)
+                     /label="yet another feature"
+                     /ApEinfo_fwdcolor="#993366"
+     misc_feature    complement(139..179)
+                     /label="yet another feature"
+                     /ApEinfo_fwdcolor="#c6c9d1"
+     misc_feature    5..8
+                     /label="yet another feature"
+                     /ApEinfo_fwdcolor="#faac61"
+     misc_feature    20..25
+                     /label="feature"
+                     /ApEinfo_fwdcolor="#84b0dc"
+     gene            complement(223..1038)
+                     /label="another feature"
+                     /ApEinfo_fwdcolor="#b4abac"
+     misc_feature    189..212
+                     /label="feature"
+                     /ApEinfo_fwdcolor="#b4abac"
+     misc_feature    51..74
+                     /label="another feature"
+                     /ApEinfo_fwdcolor="#b4abac"
+     misc_feature    84..112
+                     /label="feature"
+                     /ApEinfo_fwdcolor="#b4abac"
+     misc_feature    27..137
+                     /label="yet another feature"
+                     /ApEinfo_fwdcolor="#b4abac"
+     misc_feature    3347..3377
+                     /label="another feature"
+                     /ApEinfo_fwdcolor="#b4abac"
+     -35_signal      1367..1372
+                     /label="another feature"
+                     /ApEinfo_fwdcolor="#b4abac"
+     gene            2148..3167
+                     /label="yet another feature"
+                     /ApEinfo_fwdcolor="#b4abac"
+     -35_signal      1190..1195
+                     /label="feature"
+                     /ApEinfo_fwdcolor="#b4abac"
+     misc_RNA        1226..1778
+                     /label="feature"
+                     /ApEinfo_fwdcolor="#b4abac"
+     misc_feature    3396
+                     /label="another feature"
+                     /ApEinfo_fwdcolor="#84b0dc"
+     misc_feature    3192..3239
+                     /label="feature"
+                     /ApEinfo_fwdcolor="#c6c9d1"
+     misc_RNA        complement(1229..1336)
+                     /label="yet another feature"
+                     /ApEinfo_fwdcolor="#b4abac"
+     misc_feature    1865..1873
+                     /label="feature"
+                     /ApEinfo_fwdcolor="#b4abac"
+     misc_feature    3413..3416
+                     /label="another feature"
+                     /ApEinfo_fwdcolor="#faac61"
+     rep_origin      1190..1778
+                     /label="yet another feature"
+                     /ApEinfo_fwdcolor="#ffef86"
+     misc_feature    3300..3324
+                     /label="feature"
+                     /ApEinfo_fwdcolor="#b4abac"
+     -10_signal      1345..1350
+                     /label="another feature"
+                     /ApEinfo_fwdcolor="#b4abac"
+     rep_origin      1899..2147
+                     /label="feature"
+                     /ApEinfo_fwdcolor="#ffef86"
+     misc_feature    3397..3401
+                     /label="yet another feature"
+                     /ApEinfo_fwdcolor="#84b0dc"
+     misc_feature    3395..3412
+                     /label="yet another feature"
+                     /ApEinfo_fwdcolor="#b4abac"
+     -10_signal      1211..1216
+                     /label="feature"
+                     /ApEinfo_fwdcolor="#b4abac"
+     misc_feature    3168..3191
+                     /label="another feature"
+                     /ApEinfo_fwdcolor="#b4abac"
+     CDS             2148..3167
+                     /label="yet another feature"
+                     /ApEinfo_fwdcolor="#993366"
+     misc_feature    3351..3375
+                     /label="feature"
+                     /ApEinfo_fwdcolor="#f8d3a9"
+     misc_feature    1140..1163
+                     /label="another feature"
+                     /ApEinfo_fwdcolor="#b4abac"
+     misc_feature    5..3416
+                     /source="part_A"
+                     /indicates_part=True
+                     /note="From part_A"
+                     /color="white"
+                     /ApEinfo_fwdcolor="white"
+     homology        3417..3420
+                     /label="GGAG"
+                     /color="#f7e8f7"
+                     /ApEinfo_fwdcolor="#f7e8f7"
+     exon            5421..5618
+                     /label="feature"
+                     /ApEinfo_fwdcolor="#75c6a9"
+     gene            5421..5618
+                     /label="another feature"
+                     /ApEinfo_fwdcolor="#faac61"
+     misc_feature    3421..5618
+                     /label="another feature"
+                     /ApEinfo_fwdcolor="#f58a5e"
+     misc_feature    3421..5618
+                     /source="part_B"
+                     /indicates_part=True
+                     /note="From part_B"
+                     /color="white"
+                     /ApEinfo_fwdcolor="white"
+     homology        5619..5622
+                     /label="AATG"
+                     /color="#f7e8f7"
+                     /ApEinfo_fwdcolor="#f7e8f7"
+     CDS             5623..8880
+                     /label="feature"
+                     /ApEinfo_fwdcolor="#ffef86"
+     CDS             8881..9009
+                     /label="another feature"
+                     /ApEinfo_fwdcolor="#ffef86"
+     misc_feature    8091
+                     /label="yet another feature"
+                     /ApEinfo_fwdcolor="#b1ff67"
+     misc_feature    8736
+                     /label="another feature"
+                     /ApEinfo_fwdcolor="#b1ff67"
+     misc_feature    7683
+                     /label="yet another feature"
+                     /ApEinfo_fwdcolor="#b1ff67"
+     misc_feature    5623..9011
+                     /source="part_C"
+                     /indicates_part=True
+                     /note="From part_C"
+                     /color="white"
+                     /ApEinfo_fwdcolor="white"
+     homology        9012..9015
+                     /label="TTCG"
+                     /color="#f7e8f7"
+                     /ApEinfo_fwdcolor="#f7e8f7"
+     misc_feature    9604..9633
+                     /label="another feature"
+                     /ApEinfo_fwdcolor="#b1ff67"
+     CDS             9016..9528
+                     /label="feature"
+                     /ApEinfo_fwdcolor="#84b0dc"
+     misc_feature    9538..9603
+                     /label="feature"
+                     /ApEinfo_fwdcolor="#b7e6d7"
+     CDS             9580..9603
+                     /label="another feature"
+                     /ApEinfo_fwdcolor="#84b0dc"
+     misc_feature    9016..9636
+                     /source="part_D"
+                     /indicates_part=True
+                     /note="From part_D"
+                     /color="white"
+                     /ApEinfo_fwdcolor="white"
+     homology        9637..9640
+                     /label="GCTT"
+                     /color="#f7e8f7"
+                     /ApEinfo_fwdcolor="#f7e8f7"
+     3'UTR           9644..9953
+                     /label="feature"
+                     /ApEinfo_fwdcolor="#c6c9d1"
+     misc_feature    9641..9643
+                     /label="yet another feature"
+                     /ApEinfo_fwdcolor="#b1ff67"
+     misc_feature    9641..9953
+                     /source="part_E"
+                     /indicates_part=True
+                     /note="From part_E"
+                     /color="white"
+                     /ApEinfo_fwdcolor="white"
+     homology        9954..9957
+                     /label="GGTA"
+                     /color="#f7e8f7"
+                     /ApEinfo_fwdcolor="#f7e8f7"
+     misc_feature    9958..10366
+                     /label="another feature"
+                     /ApEinfo_fwdcolor="#faac61"
+     primer_bind     complement(10255..10275)
+                     /label="yet another feature"
+                     /ApEinfo_fwdcolor="#85dae9"
+     misc_feature    9958..10366
+                     /source="part_F"
+                     /indicates_part=True
+                     /note="From part_F"
+                     /color="white"
+                     /ApEinfo_fwdcolor="white"
+ORIGIN
+        1 cgctgtcaat atgcaggtgc tgcaggaatt tgtctccaat cgacttgaga tatcgcaagc
+       61 atgaaattat attagacacg ccagagaact tgggaagcag cactggtagt gatagcaacc
+      121 cgagtacagt aacgagtgag cttctgatca tgagctctcc tacggcgtca atgcgacgaa
+      181 tgcccagcat gcactctcgc tatccatgcc tgctagggtg gcattatgct caggaacagt
+      241 tgtagcttgg atatcgtcta gatgaaatac ctggacactg gttagcgtcg tcaagcacca
+      301 aggacattca cacgctcgcg gtctttcgtc tccctaagcg ttcggcagtc gggcgtgaag
+      361 aggttgtaat cagacggaac aaagcctgaa aaaattccag cgacgtagta ttcatgatcc
+      421 tgtaccatct gtagccgccg cggcgcacga ttgaatgtag gctactaacc ccatccgtgt
+      481 tagcgatgtg agtttctacc gcaacgaatg ctcaagcgaa ccttcttctt tcgtccgcaa
+      541 cccacaagcc gtggttatga cagctaaatt gtcccagaca tccctttatt acacaagagc
+      601 tccagcggaa tacctagtca cagcggtaat gacacaaagc tcttagttag tccagggact
+      661 acttctgtct acagcacatc acactcatta tcagcatcag tgtagagacg gagaacatgg
+      721 gctatcctat accaagatcc gccatctaaa catttgaagt ttcccgtctt ctataactta
+      781 gcactcgacg ctattctgct gagtgcgctt agtctgtagc gacttgcgaa atccataaac
+      841 tgagaattga aagagagtgc ataaccgaaa cctttgtggc atatttccgt tgaaacgtac
+      901 cagaacagcc gtttagtgcg gaacatacag tatcctgata aagcactcaa cccaacagac
+      961 accctatgcc gatagcggga tgctaacaag tatagtcatg atgatttctc ggacagcggg
+     1021 gtttggtaca gctgcaatcc gtgatttaaa ttcggacctc tgcacacacc gacggttacc
+     1081 catatcctct acggctgtag gaagttttac cttggatgtc attctgattt cggcgtatct
+     1141 cacaggatgg tccaacgaaa ctaggcttta gacgagggat gaatgaccga cccccactcg
+     1201 tggcactaac ggacagactt ccctgacggt tattcgacca ttaaagtcag acatgcgggg
+     1261 gtgaataaat tagccaaatt gtgtcgaaga aaagacgtgc ggctggcaca taaggcagtc
+     1321 ttgatcctag tcttgcaggg atgcacgtaa gtcgcctcaa ttaactgcag ccgagctcca
+     1381 ggttaccaaa gaccctagta tgccagggcc taacggttgg agtatattat gggtacgcaa
+     1441 tagtgcggaa gttaacctgg gcaacatcca ggtgagaggt tggacggaag cgacagtaag
+     1501 tggccataga ctgccgagtc gtgttaatga atcgctatac gcccatggag ttgtggggtc
+     1561 gttttatccg agtaggggcc cgctgactac ttcgtccaga caatatgccg tcttcaatag
+     1621 tctacctgag agtcatgccg gcatttccga cgctgagtga aacccgcgta gccaggcgaa
+     1681 atttgcatct tgaaatacca ctgcagatca gccagtaagg cccatataag ggcgctggtg
+     1741 ttctggcgac agataaagtg ttatctaatg taacccgcgg acttttagag gatacttgaa
+     1801 tgcgggcata tcgtcccacc agcgtcacgt ggtcgggcta gcggcagaca aactctgccg
+     1861 atgtttttct ttgccgcgat agcgggctag tcaattcact atccggcgat gaagcataga
+     1921 ttgttatcgc gcttatgcgg aggataatca agtcttggca gaacctgctc gctcatgcac
+     1981 tggtgaggcg tggttatcct aacaaccgcc taggacgaag aatgggctcg gtagggacag
+     2041 ttcgtgcgtt tagcttcgtc ccatcttaat gctgtctgga gggaggctac atgcgaacag
+     2101 aagccgtggg cgaaagttgt tgatccgggt ctaacacgga taagggccat ggtgaacgca
+     2161 tcatgcgata cttcttggta gttcttctaa catgaccgtg ccatagccct taccctttga
+     2221 agaagttaac ctatctgccg tctcctgcac gaatagcgac tggactcggg tattttggat
+     2281 acctcacgaa agcacttcga tcggccgaag catggatatt tcgccggacg ggcccgaata
+     2341 gagagccttg tatgtcggtt agtacaacgc agtcctggag acatctacgc ggatgggcct
+     2401 aggggctgga cttaacattg ggtaacgtac ctggtccaaa gtgaatgcaa agcactttta
+     2461 caaagcgcgg gtccccgtgg gtgtttaggg tagaagattg gcggatgcta cgaacgatcc
+     2521 cgctttgaaa ctatcattac atcgtgtaaa agagacactt aacaaaggcc aataaactgc
+     2581 cagtaagaat cgctcagtgc ggtgctgggg acgctaagta ggggcaacag ccagtgaagg
+     2641 acgtgaccga cctttctcag ataagatatg ctggcgtcta tctaataagc atagtgaaaa
+     2701 accaaccatt tcacttacac gaagtacatt tgcattgcta gtaaagacgc ctaaacagaa
+     2761 gtgcccttgc atgctgtatg tctatagtcc ttagggaagc atcagccctt ctacttattc
+     2821 gaggtctgag aaaccctgga caagctccga attattcaat gtgcctgtct ccgaggttag
+     2881 atagcgctat gctcttaaga gttgcacaga atgaccatcc tggaatgtcc ctggaggggt
+     2941 ctaggtatgc tgatcgaagg gtgctctaag gacttgacgt gcgtccgagg agggtgctgc
+     3001 ctccttcgcc tttagatcca acgcggatca catgcgcgtg agctaatagg atcaccttct
+     3061 gctccgattt ttaccctcct gggtcacttc cgaatgaggt agcgggcgaa atataatgtc
+     3121 tccactcgta ggtgttccct gtatgtgaag ctctatagtg gacaaaggtt tgatgaacta
+     3181 gcccccgtat acgctctcac cgacggacgc gggggtctgt tatttgaagc atcatacatg
+     3241 cgaaggtgcc ttctcagcaa cgaaaggtag tgggagtgta caagttcaat gcgccgccat
+     3301 aggtctgagt atacaagggg atgcccccat ccacaacggg attggctacc cggagagctg
+     3361 gctccgctcc aacaaataat tatattaacc tattggaatt ccacctgcat atcagaggag
+     3421 agcatacggt gctctgggct cacacgtact tcctcttgtc acgcgccttt gtagagcatt
+     3481 agggcggagg tcactgggac ggggatcaga gagcttaaaa tcccaagtag cagtgcctaa
+     3541 ggtgtagaat cttgtgcaga tcttcgtctg gcccgaaacc tgggcctcca caacaatgtc
+     3601 gggtctttta taatttgaaa acatcgcgcc ttacccgcac cgcgcaggac gattagacac
+     3661 agggggtcat gtccatggtt cggggtaagc caaatttaca tcgagtgtgg gcttcattga
+     3721 ggagagggcg ttacgatacc cgttaaatga aaacccggac agtctctaac tgataggcct
+     3781 gataatcgcc aaatgaagtc gcaattagca gtacatgact ggcagatatg tcgccggaga
+     3841 cggtatgggg gacctatcct aggttggcac gcgagcgcga atgacgccta tcttatcccc
+     3901 ctgcacgtga tggtatcgtc ccaactatct tttacctcat caacgttttc ctgcataatc
+     3961 tgcaagatgg agagtccgcg agtgcgggga gtacgagatc acaaatctgc cctgaagaca
+     4021 aagctcgcag gccgtactca ggaaatagca tcgactcaca catatcggga acggcaaaga
+     4081 gtgcatcggc caatgcaaac tattgaacgt ccatgaaatt gtgtcaaact actagtgtgt
+     4141 ggacttgcgt caaggccatg gcgcaatact caaagccccg gtatttatcc cccgcagagt
+     4201 atccgtgcgg atggagttcc acagctcttt ggacatgcaa tgcgtggcgc tacatgctcc
+     4261 gctgatacag aatatctaat gtctcgcctc ttgccgtcga ccctacaact actgcacggg
+     4321 cagagtggac gcgacccctg agcggtgcag aaccttagta taaggcaagg gtggcacggc
+     4381 cgagccgcac ttgctcctac taggccgtgc tcgaagctat tgatgcaagc acagtattcc
+     4441 cgatttgtaa agcaaggtgc ccgtagccat acacccagct actcaccggc caatttcgac
+     4501 cctctctatc tcagacctcc gcatattccc aaactcctgc tcaagtatga aatgaccggc
+     4561 tcctcctaag gcctgcggac atggagtcat gcgtggaatg ccgtgtaggt agggtacaca
+     4621 cagccttacc atgtagggca ataaattata gactactgac attgattcct tgagggcccg
+     4681 ttcacttgtg ggggaaccag gaaggcgccg atagtcatca cttaaacaca tgcgacgcat
+     4741 ccatttcaag aaagacacgc tacgggtcta caccgcctat agttctaatt tgggccccgg
+     4801 tacgcacatc gatgtactct ccattacagc atagcacatc agcggcccta gttagcgctt
+     4861 ctttttgttc caacattcaa tagcggggac tgcattatcc tcaccctatt tgttgcatag
+     4921 gtatttggcc gtatacttgg gaaagagcaa ccacgggagt gcactagaaa ctgattcacc
+     4981 catgttataa cgcgttgctc gcaagtcgta ctgtggccac gcacaggtca ggcaatcgca
+     5041 accatgtctt agcagtttgt aagaagacct ttaaacatgt acctcacagc aatctcggaa
+     5101 cttttaattt tcctgagtca atgacatgct agctccgtcc acttgtaatc accgtcataa
+     5161 cacagttagc ctgcaaaagg gcgtgtacac cttgccactt taaagctgac cgaataacct
+     5221 acctacagga gatgcttagt gccacggaat gatctcgcaa tgcttagtct tacacccagt
+     5281 gaatcaaccc aagacctcgc cgactgaacg gtattgagtc caatcccgag aggcaattta
+     5341 tggccgttag tgacagtcgg tcgctgatag aataaggcag actcgtctta agcgggctgc
+     5401 tttaagagaa aatggagccc tgacgaagaa gtggatgaac caggttttga caacgtccca
+     5461 tattggtaat gtaggctcgt tatcaagaga taggtttaga aggctcaatg ctcgacgtaa
+     5521 aagaagtctt aagctctatg agccagtgat gagagctaat tatagggcgc attcgttggg
+     5581 gtaaggttgc gaattgtcat ttaactaaaa ccgacggcaa tggtttcacc ggagctgaga
+     5641 tcgcattaaa gtcacactac gaattatttg tccccgcggc tccagagaca aatttctagg
+     5701 agtgggttca tggagaaccg tgacaagcat ggtagcttca aatagcgtca tcggatctta
+     5761 aagtgattgt gacatatatg ggattgcgcg tctctcttac acaagctagt gtgcgcgagg
+     5821 tgctgaacac ctattacgtc aactcccggg atcccggcgg gttacagaga cataagcagg
+     5881 gtgtccatca ttaacttcga tgttgagccc gtgccctgat caaacacctc tcgtagtagt
+     5941 gggtgccggc cgtgtattat tttgggggag aggatgcgcc ctaagcaatt tctttccatc
+     6001 ggccagccat tcgacgccgg cacgcaagtt gttgcgggca ctgttgcagt tcccgtacta
+     6061 gagtctcaag tctagaggta ccagcatcag gaagatgggt acttcgtgtg gatcttctcc
+     6121 tgaacctgaa acctgaagag ctaaagcgcg tcgcgctgcc atacgataag tcgctctcat
+     6181 ttccggaaga cgtcgttggg tgatggcgaa caatcgcgaa acgaaaatcg cggtcggtat
+     6241 gttgattcaa gacgggctac gggcgggtta ctaacaggtg cgcagaaatg tgatgggtca
+     6301 cttgaccatg aactttcgcg ccgtcgcttc tgtggactgg ccggctccct gatagtgcac
+     6361 tagcccgttg atatgcccat taccatttgg cggcgcagtg tgccagcggg attaagatgc
+     6421 gtggcgtaca actatccgca ctttgctgac gcacaaaggc aactgatgga cagccttcgg
+     6481 gcattcgact ggttggctga gttcgcctgc ctattaatat gcttgtggaa attgatttac
+     6541 agcgcctact tctacttagg tgtacctatt tacggcacag ggataaaggc tgacagaaaa
+     6601 gtcctggaca ggtcataggt agttgtcaga cctacaatgg tataacttga gagtcctgta
+     6661 ccgcacatgc ggttgtagct agatgtccag aagaccgtag ctagcgacga gtgggttgca
+     6721 cgcgcatttt gggaaggggc tgcgcgaggg tggggtcacg ggttattcca tttctaaatg
+     6781 ctaaaccagc agttgcttta gttctgacct agcaggcatg tcatatgtat ggctagatta
+     6841 ttagtacaat gcaggactaa gaaagcctga gacttaaatg cgttggtttt tcagccgacg
+     6901 ggccgggagg gcagatggcc gaatgcgcac tgaggagtgc attgcgaggg aataggcgga
+     6961 ccaccaggtc ccctcacata ctgtggataa acctacccag ggacaactca cgccatcatt
+     7021 ttcaagagta gcactacttt ccactaagta cggtttgtcg agagccggtg gcaccgtgcg
+     7081 acgagcttgt gggcactagg cgaaccgggt tatataggac tgccttgcgg tgcgggaata
+     7141 ctttaccccg tggagaggcc ataaaagctt acatttattg tagccgctag cggtttcgac
+     7201 gcgctcaagt ggggctttat cttagagtat caaataatgc cctctcagct tcatcttgat
+     7261 ttttgtgttt ggggtagtgt atccgatggg tcaccttctt gaccttgggg agctccatcc
+     7321 atcgtaccaa tactccgttt ctttgtgttg cctaccgagt aatcgaatac cgcacgaggg
+     7381 ctagaatcta atttaaggtg ggtcttatcc ctgttgtttg gacctaacgc tgtaacaaat
+     7441 cacttccgcg acgggtgtca ttacgtcttc tatccgccac cggttcaaca gtgcgtcgaa
+     7501 tgccaagtcc ctattacccg cattgtaaag ccattacaat acctccggtg atataattga
+     7561 ttgccggttg gcaagggatc atctgtacgg gccgcgattg attgctgata aggaacggcg
+     7621 gtaaggaacg tatcgcgtac gaggttgtac actggaaccg ctaaacaagc ggtatcgcta
+     7681 aattaccggc gattatatca agggaatctt aggtagcacg aagccctacg ccctggaaac
+     7741 aggatcggcg cgaggccgtg gacatattag cctacgtttt tttacaccca gatttccgac
+     7801 gatgtccaca gctaaggcta tcctaaaccg caaacacata taaccgcagt ataaagcacg
+     7861 ggatgattcc ttggccatct tgcaagcagt gcaaggcaat tctggtgata ggggcaaggc
+     7921 agtgaaccga gtggtcagcg tattgtgacc ctgcaattgt catggcagat aattgtttat
+     7981 gaacctgttt cacacaccca tcccttggat ctccagcgta gttactaata gtacgatttc
+     8041 ctggtgttct gtcacccgcc ttgctgcctt cacgcctgcc ccacgttttg ctgtccactg
+     8101 aatatcgctc taattaatag gtgtcacact gtatcaggta agtccattcc gggtgctatt
+     8161 ggatcattcc tgagatgtac caccgatccc ataggcgtta ggtcttacat ctggagtgaa
+     8221 aaagatcagc atcgaactat aggtagataa aggtcatgac tgttaacaga gaatcgttcc
+     8281 tatcgcaacc ttcactaact ggaaggcacc cccacacttt gattagtaag cccctagcga
+     8341 atgtagtgat ccaagaacat cgagtatact ttagctctcg gttcaggcat gtatgcaatc
+     8401 gaccaccctt ccgttcagag tactctcaac cagcagattt ctaaacttta tagcctccgc
+     8461 ccactaaaat tgccttatct caggttgact cttggatgta gctgtaatct aacatacaca
+     8521 tggagctgcg gcaaattatc gtacgtccaa accaccaccg gatcagtggc gatactattc
+     8581 tcgcaaaaaa gccatccagc attggaacaa gtgttaacca gcatttttct gagtcccccg
+     8641 gaaagaaagt tgactacact acatccataa atgctagagt gtggattcgc catgtgttac
+     8701 aacggtcaac cgaaaggtta gcatgatact tcgttgttca atcggacgtt cgagcgccct
+     8761 ccctgtttat cacttgatcc cccttttgaa acatgtgcgc tgcgacgcag ggctgggaga
+     8821 gtcaccggaa accaaaagcc cgacctcgga cgtgtagggc cctccgtttg ccatcaatgg
+     8881 cgatgtagga ttctctttta atacaacgtt cactcaatta acgtcttggt ataagcgtcg
+     8941 aacgtgaccg aggttgacac cagtgtcacg gctgcgccgg ggtttgttgc tccgcgtgta
+     9001 cagggtattg gttcgatggt gcctcctcta cgtagatcta ctggataacc gtccccaata
+     9061 tccgcttccc aacgtagatt gccgacaggc ataagcttcg ggggcgcaaa ggccgacgtc
+     9121 cgcattgcag tgtagctttg tgagcaggaa gtgtgatagt ctttcgatta ttaaagtctg
+     9181 agctgaatga aaaaaggtcc aacgaatgga ggacgcgaag acatgggtgt ctcttatggc
+     9241 ccgagcggga gtaatggcgg ttcgtacata aaggctgaaa ggattctggc gttagctgtc
+     9301 ttacgttgga ttggcccttc aaattatcga tgttagctga ttcggtgtac cgggcgagga
+     9361 aagcgctctc agaacaactt catatacgag gttcgactat aatggtctaa gctcctgggc
+     9421 tagtctcaag aagcgggtac ctttagtagc acgtatcgac ggcaaagcaa agaataaaaa
+     9481 cttggctttg catcgtgcaa agatttctaa ctaggttgtt taagggctgg tatctatgtc
+     9541 ccgctataac agcgcgccta cagtagaagt ttaaccatga catacctttg aagtgttcgt
+     9601 atcacacaca aggaaggagc atgtggacac cactgagctt tgatcagcac gcgtctcaga
+     9661 gtttcagggg gacccaaatt actggtcctc aattgggacg cgaccgcatc tccccacgaa
+     9721 agcttatggg gattgcccac tgcccagctt caaatctgaa ggttcggctt attgacaggg
+     9781 tctaacacgc agctcaactg ctcgaggtta gaggcgtaat gacgggcccc gatagccttc
+     9841 tacgattacg tccagcagga accccacagc ttttccctac gtctaacacc gtgaaagcaa
+     9901 aactgtctgc ccttttacat ggtctttaag gaatctctgc acttatgtta ttaggtaagc
+     9961 tcccataaga gcaccacttc gtgtaccttg ctaactccct tcatccccac ccgcgaaaac
+    10021 ttaagacgtc acccctgtta ttatcccgtg cactcctaaa gtgcgatggg caagaacgca
+    10081 aacaattgtc tgagatttat atgggcggcg gacatagtca gagagcctta tataatctcc
+    10141 cacgtcttgc cagtccgagt tatgagaaac ccgggaccga tgacgctatt acggtcgccc
+    10201 agcgaggttc aacagagcga ggcataggag tcattacgcg tgttagcttc aacatgcgtg
+    10261 gaagtgaaac ggatctataa aacggcgtgg agtcatcagc ttgagcagat ctaacttact
+    10321 cgccacgcgc gcaaatcgtc tttcgctgtc cacgttatac gtaact
+//
--- /dev/null	Thu Jan 01 00:00:00 1970 +0000
+++ b/test-data/init/2-step-golden_gate_plan_simulation/all_construct_records/construct_2.gb	Fri May 16 11:32:06 2025 +0000
@@ -0,0 +1,279 @@
+LOCUS       construct_2             6910 bp    DNA     circular UNK 01-JAN-1980
+DEFINITION  .
+ACCESSION   construct_2
+VERSION     construct_2
+KEYWORDS    .
+SOURCE      .
+  ORGANISM  .
+            .
+FEATURES             Location/Qualifiers
+     homology        1..4
+                     /label="CGCT"
+                     /color="#f7e8f7"
+                     /ApEinfo_fwdcolor="#f7e8f7"
+     misc_feature    9..25
+                     /label="feature"
+                     /ApEinfo_fwdcolor="#b4abac"
+     CDS             complement(223..1038)
+                     /label="yet another feature"
+                     /ApEinfo_fwdcolor="#993366"
+     misc_feature    complement(139..179)
+                     /label="yet another feature"
+                     /ApEinfo_fwdcolor="#c6c9d1"
+     misc_feature    5..8
+                     /label="yet another feature"
+                     /ApEinfo_fwdcolor="#faac61"
+     misc_feature    20..25
+                     /label="feature"
+                     /ApEinfo_fwdcolor="#84b0dc"
+     gene            complement(223..1038)
+                     /label="another feature"
+                     /ApEinfo_fwdcolor="#b4abac"
+     misc_feature    189..212
+                     /label="feature"
+                     /ApEinfo_fwdcolor="#b4abac"
+     misc_feature    51..74
+                     /label="another feature"
+                     /ApEinfo_fwdcolor="#b4abac"
+     misc_feature    84..112
+                     /label="feature"
+                     /ApEinfo_fwdcolor="#b4abac"
+     misc_feature    27..137
+                     /label="yet another feature"
+                     /ApEinfo_fwdcolor="#b4abac"
+     misc_feature    3347..3377
+                     /label="another feature"
+                     /ApEinfo_fwdcolor="#b4abac"
+     -35_signal      1367..1372
+                     /label="another feature"
+                     /ApEinfo_fwdcolor="#b4abac"
+     gene            2148..3167
+                     /label="yet another feature"
+                     /ApEinfo_fwdcolor="#b4abac"
+     -35_signal      1190..1195
+                     /label="feature"
+                     /ApEinfo_fwdcolor="#b4abac"
+     misc_RNA        1226..1778
+                     /label="feature"
+                     /ApEinfo_fwdcolor="#b4abac"
+     misc_feature    3396
+                     /label="another feature"
+                     /ApEinfo_fwdcolor="#84b0dc"
+     misc_feature    3192..3239
+                     /label="feature"
+                     /ApEinfo_fwdcolor="#c6c9d1"
+     misc_RNA        complement(1229..1336)
+                     /label="yet another feature"
+                     /ApEinfo_fwdcolor="#b4abac"
+     misc_feature    1865..1873
+                     /label="feature"
+                     /ApEinfo_fwdcolor="#b4abac"
+     misc_feature    3413..3416
+                     /label="another feature"
+                     /ApEinfo_fwdcolor="#faac61"
+     rep_origin      1190..1778
+                     /label="yet another feature"
+                     /ApEinfo_fwdcolor="#ffef86"
+     misc_feature    3300..3324
+                     /label="feature"
+                     /ApEinfo_fwdcolor="#b4abac"
+     -10_signal      1345..1350
+                     /label="another feature"
+                     /ApEinfo_fwdcolor="#b4abac"
+     rep_origin      1899..2147
+                     /label="feature"
+                     /ApEinfo_fwdcolor="#ffef86"
+     misc_feature    3397..3401
+                     /label="yet another feature"
+                     /ApEinfo_fwdcolor="#84b0dc"
+     misc_feature    3395..3412
+                     /label="yet another feature"
+                     /ApEinfo_fwdcolor="#b4abac"
+     -10_signal      1211..1216
+                     /label="feature"
+                     /ApEinfo_fwdcolor="#b4abac"
+     misc_feature    3168..3191
+                     /label="another feature"
+                     /ApEinfo_fwdcolor="#b4abac"
+     CDS             2148..3167
+                     /label="yet another feature"
+                     /ApEinfo_fwdcolor="#993366"
+     misc_feature    3351..3375
+                     /label="feature"
+                     /ApEinfo_fwdcolor="#f8d3a9"
+     misc_feature    1140..1163
+                     /label="another feature"
+                     /ApEinfo_fwdcolor="#b4abac"
+     misc_feature    5..3416
+                     /source="part_A"
+                     /indicates_part=True
+                     /note="From part_A"
+                     /color="white"
+                     /ApEinfo_fwdcolor="white"
+     homology        3417..3420
+                     /label="GGAG"
+                     /color="#f7e8f7"
+                     /ApEinfo_fwdcolor="#f7e8f7"
+     misc_feature    3421..4505
+                     /source="part_G"
+                     /indicates_part=True
+                     /note="From part_G"
+                     /color="white"
+                     /ApEinfo_fwdcolor="white"
+     homology        4506..4509
+                     /label="AATG"
+                     /color="#f7e8f7"
+                     /ApEinfo_fwdcolor="#f7e8f7"
+     misc_feature    4510..6158
+                     /source="part_H"
+                     /indicates_part=True
+                     /note="From part_H"
+                     /color="white"
+                     /ApEinfo_fwdcolor="white"
+     homology        6159..6162
+                     /label="GCTT"
+                     /color="#f7e8f7"
+                     /ApEinfo_fwdcolor="#f7e8f7"
+     misc_feature    6163..6497
+                     /label="feature"
+                     /ApEinfo_fwdcolor="#f8d3a9"
+     misc_feature    6163..6497
+                     /source="part_I"
+                     /indicates_part=True
+                     /note="From part_I"
+                     /color="white"
+                     /ApEinfo_fwdcolor="white"
+     homology        6498..6501
+                     /label="GGTA"
+                     /color="#f7e8f7"
+                     /ApEinfo_fwdcolor="#f7e8f7"
+     misc_feature    6502..6910
+                     /label="another feature"
+                     /ApEinfo_fwdcolor="#faac61"
+     primer_bind     complement(6799..6819)
+                     /label="yet another feature"
+                     /ApEinfo_fwdcolor="#85dae9"
+     misc_feature    6502..6910
+                     /source="part_F"
+                     /indicates_part=True
+                     /note="From part_F"
+                     /color="white"
+                     /ApEinfo_fwdcolor="white"
+ORIGIN
+        1 cgctgtcaat atgcaggtgc tgcaggaatt tgtctccaat cgacttgaga tatcgcaagc
+       61 atgaaattat attagacacg ccagagaact tgggaagcag cactggtagt gatagcaacc
+      121 cgagtacagt aacgagtgag cttctgatca tgagctctcc tacggcgtca atgcgacgaa
+      181 tgcccagcat gcactctcgc tatccatgcc tgctagggtg gcattatgct caggaacagt
+      241 tgtagcttgg atatcgtcta gatgaaatac ctggacactg gttagcgtcg tcaagcacca
+      301 aggacattca cacgctcgcg gtctttcgtc tccctaagcg ttcggcagtc gggcgtgaag
+      361 aggttgtaat cagacggaac aaagcctgaa aaaattccag cgacgtagta ttcatgatcc
+      421 tgtaccatct gtagccgccg cggcgcacga ttgaatgtag gctactaacc ccatccgtgt
+      481 tagcgatgtg agtttctacc gcaacgaatg ctcaagcgaa ccttcttctt tcgtccgcaa
+      541 cccacaagcc gtggttatga cagctaaatt gtcccagaca tccctttatt acacaagagc
+      601 tccagcggaa tacctagtca cagcggtaat gacacaaagc tcttagttag tccagggact
+      661 acttctgtct acagcacatc acactcatta tcagcatcag tgtagagacg gagaacatgg
+      721 gctatcctat accaagatcc gccatctaaa catttgaagt ttcccgtctt ctataactta
+      781 gcactcgacg ctattctgct gagtgcgctt agtctgtagc gacttgcgaa atccataaac
+      841 tgagaattga aagagagtgc ataaccgaaa cctttgtggc atatttccgt tgaaacgtac
+      901 cagaacagcc gtttagtgcg gaacatacag tatcctgata aagcactcaa cccaacagac
+      961 accctatgcc gatagcggga tgctaacaag tatagtcatg atgatttctc ggacagcggg
+     1021 gtttggtaca gctgcaatcc gtgatttaaa ttcggacctc tgcacacacc gacggttacc
+     1081 catatcctct acggctgtag gaagttttac cttggatgtc attctgattt cggcgtatct
+     1141 cacaggatgg tccaacgaaa ctaggcttta gacgagggat gaatgaccga cccccactcg
+     1201 tggcactaac ggacagactt ccctgacggt tattcgacca ttaaagtcag acatgcgggg
+     1261 gtgaataaat tagccaaatt gtgtcgaaga aaagacgtgc ggctggcaca taaggcagtc
+     1321 ttgatcctag tcttgcaggg atgcacgtaa gtcgcctcaa ttaactgcag ccgagctcca
+     1381 ggttaccaaa gaccctagta tgccagggcc taacggttgg agtatattat gggtacgcaa
+     1441 tagtgcggaa gttaacctgg gcaacatcca ggtgagaggt tggacggaag cgacagtaag
+     1501 tggccataga ctgccgagtc gtgttaatga atcgctatac gcccatggag ttgtggggtc
+     1561 gttttatccg agtaggggcc cgctgactac ttcgtccaga caatatgccg tcttcaatag
+     1621 tctacctgag agtcatgccg gcatttccga cgctgagtga aacccgcgta gccaggcgaa
+     1681 atttgcatct tgaaatacca ctgcagatca gccagtaagg cccatataag ggcgctggtg
+     1741 ttctggcgac agataaagtg ttatctaatg taacccgcgg acttttagag gatacttgaa
+     1801 tgcgggcata tcgtcccacc agcgtcacgt ggtcgggcta gcggcagaca aactctgccg
+     1861 atgtttttct ttgccgcgat agcgggctag tcaattcact atccggcgat gaagcataga
+     1921 ttgttatcgc gcttatgcgg aggataatca agtcttggca gaacctgctc gctcatgcac
+     1981 tggtgaggcg tggttatcct aacaaccgcc taggacgaag aatgggctcg gtagggacag
+     2041 ttcgtgcgtt tagcttcgtc ccatcttaat gctgtctgga gggaggctac atgcgaacag
+     2101 aagccgtggg cgaaagttgt tgatccgggt ctaacacgga taagggccat ggtgaacgca
+     2161 tcatgcgata cttcttggta gttcttctaa catgaccgtg ccatagccct taccctttga
+     2221 agaagttaac ctatctgccg tctcctgcac gaatagcgac tggactcggg tattttggat
+     2281 acctcacgaa agcacttcga tcggccgaag catggatatt tcgccggacg ggcccgaata
+     2341 gagagccttg tatgtcggtt agtacaacgc agtcctggag acatctacgc ggatgggcct
+     2401 aggggctgga cttaacattg ggtaacgtac ctggtccaaa gtgaatgcaa agcactttta
+     2461 caaagcgcgg gtccccgtgg gtgtttaggg tagaagattg gcggatgcta cgaacgatcc
+     2521 cgctttgaaa ctatcattac atcgtgtaaa agagacactt aacaaaggcc aataaactgc
+     2581 cagtaagaat cgctcagtgc ggtgctgggg acgctaagta ggggcaacag ccagtgaagg
+     2641 acgtgaccga cctttctcag ataagatatg ctggcgtcta tctaataagc atagtgaaaa
+     2701 accaaccatt tcacttacac gaagtacatt tgcattgcta gtaaagacgc ctaaacagaa
+     2761 gtgcccttgc atgctgtatg tctatagtcc ttagggaagc atcagccctt ctacttattc
+     2821 gaggtctgag aaaccctgga caagctccga attattcaat gtgcctgtct ccgaggttag
+     2881 atagcgctat gctcttaaga gttgcacaga atgaccatcc tggaatgtcc ctggaggggt
+     2941 ctaggtatgc tgatcgaagg gtgctctaag gacttgacgt gcgtccgagg agggtgctgc
+     3001 ctccttcgcc tttagatcca acgcggatca catgcgcgtg agctaatagg atcaccttct
+     3061 gctccgattt ttaccctcct gggtcacttc cgaatgaggt agcgggcgaa atataatgtc
+     3121 tccactcgta ggtgttccct gtatgtgaag ctctatagtg gacaaaggtt tgatgaacta
+     3181 gcccccgtat acgctctcac cgacggacgc gggggtctgt tatttgaagc atcatacatg
+     3241 cgaaggtgcc ttctcagcaa cgaaaggtag tgggagtgta caagttcaat gcgccgccat
+     3301 aggtctgagt atacaagggg atgcccccat ccacaacggg attggctacc cggagagctg
+     3361 gctccgctcc aacaaataat tatattaacc tattggaatt ccacctgcat atcagaggag
+     3421 gaacttctat gggacgaaag atgcgcagct cgacaaatct caaattggaa accgtctaag
+     3481 gtctttgagc ccacgctagg ccaccgaata gttgcgagct cgtgggcaat tgctggctag
+     3541 cggtttgtat cgtatacgta acaagagatt gcgccggatt cattcgtgtg gggtgctttc
+     3601 acatcggaat actcaagagt gggggtttgc gctttaatat gacggcctca tgcaccccaa
+     3661 aaataagagc gccaatttca tcgaccacat tccggacaat tctgacttcc ctgtcggatc
+     3721 gaccctcgct cacaactcct agaactccaa gacggtagga cgtcagccga aaaggaggag
+     3781 tgacgacggg ccctcctagc tgaagcaatg gggggcgtcg accctagcct ggtgtgggac
+     3841 ttcggagggt cgggcgtgtg gccattcctg cacgaggggc ccttgcagta tcgaactttg
+     3901 acgagaaagt ggggggcgac ctataaacat agcggagttc aatactcctg caagtgcatg
+     3961 atgacgttca gcgttggcac atcgaacgcg tcgctacact tgctcaccgg aaggcaaaat
+     4021 agaccggcag ctggcccgca cggacgtcta gactcctacg ctgtcaaatg cacgatgact
+     4081 attagcatgc ggaattcgag gcggccggta catcgagaca cgctggtctt aatacctgtg
+     4141 ttatgtcaaa acaagtgtct cggcggcttt gtactacgct gtgaatgcgc atgatgttgc
+     4201 gagaagctga acgttggtag cagtctacaa cagaaccgac gagctacgga cgggttacag
+     4261 caggatcccc tcttaaggca ttattcgacg actccaggtt ctaaccgatc agtaattgcc
+     4321 tcggatggtc gtacgtgtta accgagacag caaggcacca catagacaac tgcatagggc
+     4381 gcctacaggt ccacaatcag ggtggcccaa gatcctcaaa gacttgttgc agtctctgct
+     4441 tattccgttt aacacgttgt gtgagctcta gcttactacc tcatcggtgt cgggagtgat
+     4501 ttaggaatgg aagacgcgtt tagtcttcgg cccccagacg gcaccggcag agccactgcc
+     4561 aatgcctttt acgctgaact cttcgacttt ggcatgtgcg actgactata cgccgatggc
+     4621 cctaccctgc agcggaaagg cacagggcca aaaacagtgg aagcgcaccg ctagagcttt
+     4681 actaaatcct ttagggtgaa ccggtgttca gtcaacagaa acatatgact agtccttaat
+     4741 ggcactacta aaggcggccc atctcttttg taggtcacgt ctcatcgttt agcaagcgtc
+     4801 cgccatccga ggagtatcct agtacgtgag agggtgtttt acctcatcac atggtttttg
+     4861 gctagatgtg gcagatgcca gctgatacct tacaacccgc tataacggtt tctggatcga
+     4921 cgatacaacc tgcttcggca tatcataatg gcggcctcat aggacttcca atcatggtta
+     4981 tgcgagtttg atgtgttgaa gattgtgagg ggaaaccttt ttccgagtac gttgaatctg
+     5041 cgactgatgg tgaacaactc atcgagaggg atgtgcgggc agtctccttg atgcgcgaaa
+     5101 aggagtcgcg accgcgtgtt cgtgacgcac ttgatgctag accgtagggg ctcattatct
+     5161 cctgaaacag tagctagctt ttggtgtccg agtcagctta ggcacagtaa ttgaaaagaa
+     5221 ggaaatgcgt gaaaactaaa cgtagacact ccttgctaag aattccctgg tctttttcga
+     5281 gcatagacta ccgtaggtaa aaggcttgtc gtgtcacaaa tagacttgat ctgttcggca
+     5341 tatacacatc ctactgcttc agtaaccaag gacgattctc cggccattgg actgtgggac
+     5401 cacccgcgtt caaacggaat cctctacgaa cggttaagaa aggagcccac tgcttgcgga
+     5461 gacatatcgt tgctgagtgg tacaccggtg agtcaaaaag tactgacact actggtggac
+     5521 tctcgggtac gatgtgtggg gtattggcat actatggcgc taagcgtgga atagtgtttc
+     5581 caatagccct ttacctaaga agcattctga cacatgggtt ggacttttac acagacctat
+     5641 aactcgtatc cggcctggtg atgtatgtcc gcttatcact gaatgcagga ttccgccaat
+     5701 tccgctcgcg ggttctcgga caacgggcca tggagatgga tcaatgagcc atgttgatta
+     5761 ccatttcact acacacggtt agtcaattcc ggagatcata attcgacaat tgaatatgcg
+     5821 tgatacgctt tctgttacca ggatcgttgc taattagttt ccaatgtcac agtgttgggc
+     5881 ggcgaggtat cacggcgctc tgggtagaat ggcggtgcct gactggacct cataactggt
+     5941 aacataccta tgaccaaagg aggtcagaca ccgatgagtc ggtgacatgg gcggtcacag
+     6001 cgtgccctgc atagtaatac agctcgtttc tagacatttg tcctaattcg ccacacaagt
+     6061 acgagagcgg gggtaaccca tcaccatcgt gcccgtaggt acctaatctt catcgagcgc
+     6121 tattgttaaa gtggactcag ggatcggcat ctcgtgtagc ttttattatc cggcatgcat
+     6181 gcggcgttgc atcgcttcat cgtcatcgac atatcgttag cgggacttat cagggtccca
+     6241 tcacggctgt gacagctgtt cataagtgta atagcagtca ccccaccaaa tgcaagactg
+     6301 ttcccaaact aagtgctagg gaggttggct acctatcggc gtggcagttg accgggtttt
+     6361 tcttagtacc tgccttccaa tctccgataa aagcaagatg acttcctgct tgcgctaaag
+     6421 tctgaattcg ctaagggggc agattcatta ccagagactg ccaaagtcaa ccgccgaacg
+     6481 atactggaat atatggaggt aagctcccat aagagcacca cttcgtgtac cttgctaact
+     6541 cccttcatcc ccacccgcga aaacttaaga cgtcacccct gttattatcc cgtgcactcc
+     6601 taaagtgcga tgggcaagaa cgcaaacaat tgtctgagat ttatatgggc ggcggacata
+     6661 gtcagagagc cttatataat ctcccacgtc ttgccagtcc gagttatgag aaacccggga
+     6721 ccgatgacgc tattacggtc gcccagcgag gttcaacaga gcgaggcata ggagtcatta
+     6781 cgcgtgttag cttcaacatg cgtggaagtg aaacggatct ataaaacggc gtggagtcat
+     6841 cagcttgagc agatctaact tactcgccac gcgcgcaaat cgtctttcgc tgtccacgtt
+     6901 atacgtaact
+//
--- /dev/null	Thu Jan 01 00:00:00 1970 +0000
+++ b/test-data/init/2-step-golden_gate_plan_simulation/all_construct_records/construct_3.gb	Fri May 16 11:32:06 2025 +0000
@@ -0,0 +1,457 @@
+LOCUS       construct_3            11530 bp    DNA     circular UNK 01-JAN-1980
+DEFINITION  .
+ACCESSION   construct_3
+VERSION     construct_3
+KEYWORDS    .
+SOURCE      .
+  ORGANISM  .
+            .
+FEATURES             Location/Qualifiers
+     homology        1..4
+                     /label="CAGA"
+                     /color="#f7e8f7"
+                     /ApEinfo_fwdcolor="#f7e8f7"
+     homology        5..8
+                     /label="GGAG"
+                     /color="#f7e8f7"
+                     /ApEinfo_fwdcolor="#f7e8f7"
+     exon            2009..2206
+                     /label="feature"
+                     /ApEinfo_fwdcolor="#75c6a9"
+     gene            2009..2206
+                     /label="another feature"
+                     /ApEinfo_fwdcolor="#faac61"
+     misc_feature    9..2206
+                     /label="another feature"
+                     /ApEinfo_fwdcolor="#f58a5e"
+     misc_feature    9..2206
+                     /source="part_B"
+                     /indicates_part=True
+                     /note="From part_B"
+                     /color="white"
+                     /ApEinfo_fwdcolor="white"
+     homology        2207..2210
+                     /label="AATG"
+                     /color="#f7e8f7"
+                     /ApEinfo_fwdcolor="#f7e8f7"
+     CDS             2211..5468
+                     /label="feature"
+                     /ApEinfo_fwdcolor="#ffef86"
+     CDS             5469..5597
+                     /label="another feature"
+                     /ApEinfo_fwdcolor="#ffef86"
+     misc_feature    4679
+                     /label="yet another feature"
+                     /ApEinfo_fwdcolor="#b1ff67"
+     misc_feature    5324
+                     /label="another feature"
+                     /ApEinfo_fwdcolor="#b1ff67"
+     misc_feature    4271
+                     /label="yet another feature"
+                     /ApEinfo_fwdcolor="#b1ff67"
+     misc_feature    2211..5599
+                     /source="part_C"
+                     /indicates_part=True
+                     /note="From part_C"
+                     /color="white"
+                     /ApEinfo_fwdcolor="white"
+     homology        5600..5603
+                     /label="TTCG"
+                     /color="#f7e8f7"
+                     /ApEinfo_fwdcolor="#f7e8f7"
+     misc_feature    6192..6221
+                     /label="another feature"
+                     /ApEinfo_fwdcolor="#b1ff67"
+     CDS             5604..6116
+                     /label="feature"
+                     /ApEinfo_fwdcolor="#84b0dc"
+     misc_feature    6126..6191
+                     /label="feature"
+                     /ApEinfo_fwdcolor="#b7e6d7"
+     CDS             6168..6191
+                     /label="another feature"
+                     /ApEinfo_fwdcolor="#84b0dc"
+     misc_feature    5604..6224
+                     /source="part_D"
+                     /indicates_part=True
+                     /note="From part_D"
+                     /color="white"
+                     /ApEinfo_fwdcolor="white"
+     homology        6225..6228
+                     /label="GCTT"
+                     /color="#f7e8f7"
+                     /ApEinfo_fwdcolor="#f7e8f7"
+     3'UTR           6232..6541
+                     /label="feature"
+                     /ApEinfo_fwdcolor="#c6c9d1"
+     misc_feature    6229..6231
+                     /label="yet another feature"
+                     /ApEinfo_fwdcolor="#b1ff67"
+     misc_feature    6229..6541
+                     /source="part_E"
+                     /indicates_part=True
+                     /note="From part_E"
+                     /color="white"
+                     /ApEinfo_fwdcolor="white"
+     homology        6542..6545
+                     /label="GGTA"
+                     /color="#f7e8f7"
+                     /ApEinfo_fwdcolor="#f7e8f7"
+     misc_feature    6546..6954
+                     /label="another feature"
+                     /ApEinfo_fwdcolor="#faac61"
+     primer_bind     complement(6843..6863)
+                     /label="yet another feature"
+                     /ApEinfo_fwdcolor="#85dae9"
+     misc_feature    6546..6954
+                     /source="part_F"
+                     /indicates_part=True
+                     /note="From part_F"
+                     /color="white"
+                     /ApEinfo_fwdcolor="white"
+     homology        6955..6958
+                     /label="CGCT"
+                     /color="#f7e8f7"
+                     /ApEinfo_fwdcolor="#f7e8f7"
+     misc_feature    3420^3421
+                     /source="part_A"
+                     /indicates_part=True
+                     /note="From part_A"
+                     /color="white"
+                     /ApEinfo_fwdcolor="white"
+     misc_feature    10374^10375
+                     /source="part_A"
+                     /indicates_part=True
+                     /note="From part_A"
+                     /color="white"
+                     /ApEinfo_fwdcolor="white"
+     misc_feature    5..6958
+                     /source="construct_1"
+                     /indicates_part=True
+                     /note="From construct_1"
+                     /color="white"
+                     /ApEinfo_fwdcolor="white"
+     homology        6959..6962
+                     /label="GTCA"
+                     /color="#f7e8f7"
+                     /ApEinfo_fwdcolor="#f7e8f7"
+     misc_feature    6963..6966
+                     /label="feature"
+                     /ApEinfo_fwdcolor="#ff0000"
+     misc_feature    6963..7004
+                     /source="part_L"
+                     /indicates_part=True
+                     /note="From part_L"
+                     /color="white"
+                     /ApEinfo_fwdcolor="white"
+     homology        7005..7008
+                     /label="ACCC"
+                     /color="#f7e8f7"
+                     /ApEinfo_fwdcolor="#f7e8f7"
+     CDS             complement(7202..7993)
+                     /label="feature"
+                     /ApEinfo_fwdcolor="#b7e6d7"
+     CDS             complement(7202..8107)
+                     /label="feature"
+                     /ApEinfo_fwdcolor="#993366"
+     misc_feature    7073..7101
+                     /label="another feature"
+                     /ApEinfo_fwdcolor="#b4abac"
+     -35_signal      8418..8423
+                     /label="yet another feature"
+                     /ApEinfo_fwdcolor="#b4abac"
+     misc_feature    7178..7201
+                     /label="another feature"
+                     /ApEinfo_fwdcolor="#b4abac"
+     -10_signal      8396..8401
+                     /label="feature"
+                     /ApEinfo_fwdcolor="#b4abac"
+     -35_signal      8241..8246
+                     /label="feature"
+                     /ApEinfo_fwdcolor="#b4abac"
+     misc_RNA        8277..8829
+                     /label="another feature"
+                     /ApEinfo_fwdcolor="#b4abac"
+     misc_feature    7016..7126
+                     /label="feature"
+                     /ApEinfo_fwdcolor="#b4abac"
+     misc_RNA        complement(8280..8387)
+                     /label="another feature"
+                     /ApEinfo_fwdcolor="#b4abac"
+     misc_feature    8916..8924
+                     /label="yet another feature"
+                     /ApEinfo_fwdcolor="#b4abac"
+     misc_feature    complement(7128..7168)
+                     /label="yet another feature"
+                     /ApEinfo_fwdcolor="#c6c9d1"
+     misc_feature    8191..8214
+                     /label="feature"
+                     /ApEinfo_fwdcolor="#b4abac"
+     -10_signal      8262..8267
+                     /label="yet another feature"
+                     /ApEinfo_fwdcolor="#b4abac"
+     gene            complement(7202..8107)
+                     /label="another feature"
+                     /ApEinfo_fwdcolor="#b4abac"
+     rep_origin      8241..8829
+                     /label="yet another feature"
+                     /ApEinfo_fwdcolor="#ffef86"
+     misc_feature    7040..7063
+                     /label="another feature"
+                     /ApEinfo_fwdcolor="#b4abac"
+     misc_feature    7009..7014
+                     /label="feature"
+                     /ApEinfo_fwdcolor="#84b0dc"
+     misc_feature    10219..10242
+                     /label="another feature"
+                     /ApEinfo_fwdcolor="#b4abac"
+     misc_feature    10398..10428
+                     /label="yet another feature"
+                     /ApEinfo_fwdcolor="#b4abac"
+     CDS             9199..10218
+                     /label="feature"
+                     /ApEinfo_fwdcolor="#993366"
+     gene            9199..10218
+                     /label="yet another feature"
+                     /ApEinfo_fwdcolor="#b4abac"
+     misc_feature    10441..10458
+                     /label="yet another feature"
+                     /ApEinfo_fwdcolor="#b4abac"
+     misc_feature    10351..10375
+                     /label="yet another feature"
+                     /ApEinfo_fwdcolor="#b4abac"
+     misc_feature    10402..10426
+                     /label="feature"
+                     /ApEinfo_fwdcolor="#f8d3a9"
+     misc_feature    10243..10290
+                     /label="feature"
+                     /ApEinfo_fwdcolor="#c6c9d1"
+     misc_feature    10446..10451
+                     /label="feature"
+                     /ApEinfo_fwdcolor="#84b0dc"
+     terminator      10441..10443
+                     /label="yet another feature"
+                     /ApEinfo_fwdcolor="#c6c9d1"
+     misc_feature    7009..10458
+                     /source="part_J"
+                     /indicates_part=True
+                     /note="From part_J"
+                     /color="white"
+                     /ApEinfo_fwdcolor="white"
+     homology        10459..10462
+                     /label="GGAG"
+                     /color="#f7e8f7"
+                     /ApEinfo_fwdcolor="#f7e8f7"
+     promoter        10539..10717
+                     /label="another feature"
+                     /ApEinfo_fwdcolor="#c6c9d1"
+     misc_feature    11527..11530
+                     /label="yet another feature"
+                     /ApEinfo_fwdcolor="#ff0000"
+     terminator      11274..11526
+                     /label="feature"
+                     /ApEinfo_fwdcolor="#c6c9d1"
+     CDS             10719..11269
+                     /label="another feature"
+                     /ApEinfo_fwdcolor="#b7e6d7"
+     misc_feature    10463..11530
+                     /source="part_K"
+                     /indicates_part=True
+                     /note="From part_K"
+                     /color="white"
+                     /ApEinfo_fwdcolor="white"
+ORIGIN
+        1 cagaggagag catacggtgc tctgggctca cacgtacttc ctcttgtcac gcgcctttgt
+       61 agagcattag ggcggaggtc actgggacgg ggatcagaga gcttaaaatc ccaagtagca
+      121 gtgcctaagg tgtagaatct tgtgcagatc ttcgtctggc ccgaaacctg ggcctccaca
+      181 acaatgtcgg gtcttttata atttgaaaac atcgcgcctt acccgcaccg cgcaggacga
+      241 ttagacacag ggggtcatgt ccatggttcg gggtaagcca aatttacatc gagtgtgggc
+      301 ttcattgagg agagggcgtt acgatacccg ttaaatgaaa acccggacag tctctaactg
+      361 ataggcctga taatcgccaa atgaagtcgc aattagcagt acatgactgg cagatatgtc
+      421 gccggagacg gtatggggga cctatcctag gttggcacgc gagcgcgaat gacgcctatc
+      481 ttatccccct gcacgtgatg gtatcgtccc aactatcttt tacctcatca acgttttcct
+      541 gcataatctg caagatggag agtccgcgag tgcggggagt acgagatcac aaatctgccc
+      601 tgaagacaaa gctcgcaggc cgtactcagg aaatagcatc gactcacaca tatcgggaac
+      661 ggcaaagagt gcatcggcca atgcaaacta ttgaacgtcc atgaaattgt gtcaaactac
+      721 tagtgtgtgg acttgcgtca aggccatggc gcaatactca aagccccggt atttatcccc
+      781 cgcagagtat ccgtgcggat ggagttccac agctctttgg acatgcaatg cgtggcgcta
+      841 catgctccgc tgatacagaa tatctaatgt ctcgcctctt gccgtcgacc ctacaactac
+      901 tgcacgggca gagtggacgc gacccctgag cggtgcagaa ccttagtata aggcaagggt
+      961 ggcacggccg agccgcactt gctcctacta ggccgtgctc gaagctattg atgcaagcac
+     1021 agtattcccg atttgtaaag caaggtgccc gtagccatac acccagctac tcaccggcca
+     1081 atttcgaccc tctctatctc agacctccgc atattcccaa actcctgctc aagtatgaaa
+     1141 tgaccggctc ctcctaaggc ctgcggacat ggagtcatgc gtggaatgcc gtgtaggtag
+     1201 ggtacacaca gccttaccat gtagggcaat aaattataga ctactgacat tgattccttg
+     1261 agggcccgtt cacttgtggg ggaaccagga aggcgccgat agtcatcact taaacacatg
+     1321 cgacgcatcc atttcaagaa agacacgcta cgggtctaca ccgcctatag ttctaatttg
+     1381 ggccccggta cgcacatcga tgtactctcc attacagcat agcacatcag cggccctagt
+     1441 tagcgcttct ttttgttcca acattcaata gcggggactg cattatcctc accctatttg
+     1501 ttgcataggt atttggccgt atacttggga aagagcaacc acgggagtgc actagaaact
+     1561 gattcaccca tgttataacg cgttgctcgc aagtcgtact gtggccacgc acaggtcagg
+     1621 caatcgcaac catgtcttag cagtttgtaa gaagaccttt aaacatgtac ctcacagcaa
+     1681 tctcggaact tttaattttc ctgagtcaat gacatgctag ctccgtccac ttgtaatcac
+     1741 cgtcataaca cagttagcct gcaaaagggc gtgtacacct tgccacttta aagctgaccg
+     1801 aataacctac ctacaggaga tgcttagtgc cacggaatga tctcgcaatg cttagtctta
+     1861 cacccagtga atcaacccaa gacctcgccg actgaacggt attgagtcca atcccgagag
+     1921 gcaatttatg gccgttagtg acagtcggtc gctgatagaa taaggcagac tcgtcttaag
+     1981 cgggctgctt taagagaaaa tggagccctg acgaagaagt ggatgaacca ggttttgaca
+     2041 acgtcccata ttggtaatgt aggctcgtta tcaagagata ggtttagaag gctcaatgct
+     2101 cgacgtaaaa gaagtcttaa gctctatgag ccagtgatga gagctaatta tagggcgcat
+     2161 tcgttggggt aaggttgcga attgtcattt aactaaaacc gacggcaatg gtttcaccgg
+     2221 agctgagatc gcattaaagt cacactacga attatttgtc cccgcggctc cagagacaaa
+     2281 tttctaggag tgggttcatg gagaaccgtg acaagcatgg tagcttcaaa tagcgtcatc
+     2341 ggatcttaaa gtgattgtga catatatggg attgcgcgtc tctcttacac aagctagtgt
+     2401 gcgcgaggtg ctgaacacct attacgtcaa ctcccgggat cccggcgggt tacagagaca
+     2461 taagcagggt gtccatcatt aacttcgatg ttgagcccgt gccctgatca aacacctctc
+     2521 gtagtagtgg gtgccggccg tgtattattt tgggggagag gatgcgccct aagcaatttc
+     2581 tttccatcgg ccagccattc gacgccggca cgcaagttgt tgcgggcact gttgcagttc
+     2641 ccgtactaga gtctcaagtc tagaggtacc agcatcagga agatgggtac ttcgtgtgga
+     2701 tcttctcctg aacctgaaac ctgaagagct aaagcgcgtc gcgctgccat acgataagtc
+     2761 gctctcattt ccggaagacg tcgttgggtg atggcgaaca atcgcgaaac gaaaatcgcg
+     2821 gtcggtatgt tgattcaaga cgggctacgg gcgggttact aacaggtgcg cagaaatgtg
+     2881 atgggtcact tgaccatgaa ctttcgcgcc gtcgcttctg tggactggcc ggctccctga
+     2941 tagtgcacta gcccgttgat atgcccatta ccatttggcg gcgcagtgtg ccagcgggat
+     3001 taagatgcgt ggcgtacaac tatccgcact ttgctgacgc acaaaggcaa ctgatggaca
+     3061 gccttcgggc attcgactgg ttggctgagt tcgcctgcct attaatatgc ttgtggaaat
+     3121 tgatttacag cgcctacttc tacttaggtg tacctattta cggcacaggg ataaaggctg
+     3181 acagaaaagt cctggacagg tcataggtag ttgtcagacc tacaatggta taacttgaga
+     3241 gtcctgtacc gcacatgcgg ttgtagctag atgtccagaa gaccgtagct agcgacgagt
+     3301 gggttgcacg cgcattttgg gaaggggctg cgcgagggtg gggtcacggg ttattccatt
+     3361 tctaaatgct aaaccagcag ttgctttagt tctgacctag caggcatgtc atatgtatgg
+     3421 ctagattatt agtacaatgc aggactaaga aagcctgaga cttaaatgcg ttggtttttc
+     3481 agccgacggg ccgggagggc agatggccga atgcgcactg aggagtgcat tgcgagggaa
+     3541 taggcggacc accaggtccc ctcacatact gtggataaac ctacccaggg acaactcacg
+     3601 ccatcatttt caagagtagc actactttcc actaagtacg gtttgtcgag agccggtggc
+     3661 accgtgcgac gagcttgtgg gcactaggcg aaccgggtta tataggactg ccttgcggtg
+     3721 cgggaatact ttaccccgtg gagaggccat aaaagcttac atttattgta gccgctagcg
+     3781 gtttcgacgc gctcaagtgg ggctttatct tagagtatca aataatgccc tctcagcttc
+     3841 atcttgattt ttgtgtttgg ggtagtgtat ccgatgggtc accttcttga ccttggggag
+     3901 ctccatccat cgtaccaata ctccgtttct ttgtgttgcc taccgagtaa tcgaataccg
+     3961 cacgagggct agaatctaat ttaaggtggg tcttatccct gttgtttgga cctaacgctg
+     4021 taacaaatca cttccgcgac gggtgtcatt acgtcttcta tccgccaccg gttcaacagt
+     4081 gcgtcgaatg ccaagtccct attacccgca ttgtaaagcc attacaatac ctccggtgat
+     4141 ataattgatt gccggttggc aagggatcat ctgtacgggc cgcgattgat tgctgataag
+     4201 gaacggcggt aaggaacgta tcgcgtacga ggttgtacac tggaaccgct aaacaagcgg
+     4261 tatcgctaaa ttaccggcga ttatatcaag ggaatcttag gtagcacgaa gccctacgcc
+     4321 ctggaaacag gatcggcgcg aggccgtgga catattagcc tacgtttttt tacacccaga
+     4381 tttccgacga tgtccacagc taaggctatc ctaaaccgca aacacatata accgcagtat
+     4441 aaagcacggg atgattcctt ggccatcttg caagcagtgc aaggcaattc tggtgatagg
+     4501 ggcaaggcag tgaaccgagt ggtcagcgta ttgtgaccct gcaattgtca tggcagataa
+     4561 ttgtttatga acctgtttca cacacccatc ccttggatct ccagcgtagt tactaatagt
+     4621 acgatttcct ggtgttctgt cacccgcctt gctgccttca cgcctgcccc acgttttgct
+     4681 gtccactgaa tatcgctcta attaataggt gtcacactgt atcaggtaag tccattccgg
+     4741 gtgctattgg atcattcctg agatgtacca ccgatcccat aggcgttagg tcttacatct
+     4801 ggagtgaaaa agatcagcat cgaactatag gtagataaag gtcatgactg ttaacagaga
+     4861 atcgttccta tcgcaacctt cactaactgg aaggcacccc cacactttga ttagtaagcc
+     4921 cctagcgaat gtagtgatcc aagaacatcg agtatacttt agctctcggt tcaggcatgt
+     4981 atgcaatcga ccacccttcc gttcagagta ctctcaacca gcagatttct aaactttata
+     5041 gcctccgccc actaaaattg ccttatctca ggttgactct tggatgtagc tgtaatctaa
+     5101 catacacatg gagctgcggc aaattatcgt acgtccaaac caccaccgga tcagtggcga
+     5161 tactattctc gcaaaaaagc catccagcat tggaacaagt gttaaccagc atttttctga
+     5221 gtcccccgga aagaaagttg actacactac atccataaat gctagagtgt ggattcgcca
+     5281 tgtgttacaa cggtcaaccg aaaggttagc atgatacttc gttgttcaat cggacgttcg
+     5341 agcgccctcc ctgtttatca cttgatcccc cttttgaaac atgtgcgctg cgacgcaggg
+     5401 ctgggagagt caccggaaac caaaagcccg acctcggacg tgtagggccc tccgtttgcc
+     5461 atcaatggcg atgtaggatt ctcttttaat acaacgttca ctcaattaac gtcttggtat
+     5521 aagcgtcgaa cgtgaccgag gttgacacca gtgtcacggc tgcgccgggg tttgttgctc
+     5581 cgcgtgtaca gggtattggt tcgatggtgc ctcctctacg tagatctact ggataaccgt
+     5641 ccccaatatc cgcttcccaa cgtagattgc cgacaggcat aagcttcggg ggcgcaaagg
+     5701 ccgacgtccg cattgcagtg tagctttgtg agcaggaagt gtgatagtct ttcgattatt
+     5761 aaagtctgag ctgaatgaaa aaaggtccaa cgaatggagg acgcgaagac atgggtgtct
+     5821 cttatggccc gagcgggagt aatggcggtt cgtacataaa ggctgaaagg attctggcgt
+     5881 tagctgtctt acgttggatt ggcccttcaa attatcgatg ttagctgatt cggtgtaccg
+     5941 ggcgaggaaa gcgctctcag aacaacttca tatacgaggt tcgactataa tggtctaagc
+     6001 tcctgggcta gtctcaagaa gcgggtacct ttagtagcac gtatcgacgg caaagcaaag
+     6061 aataaaaact tggctttgca tcgtgcaaag atttctaact aggttgttta agggctggta
+     6121 tctatgtccc gctataacag cgcgcctaca gtagaagttt aaccatgaca tacctttgaa
+     6181 gtgttcgtat cacacacaag gaaggagcat gtggacacca ctgagctttg atcagcacgc
+     6241 gtctcagagt ttcaggggga cccaaattac tggtcctcaa ttgggacgcg accgcatctc
+     6301 cccacgaaag cttatgggga ttgcccactg cccagcttca aatctgaagg ttcggcttat
+     6361 tgacagggtc taacacgcag ctcaactgct cgaggttaga ggcgtaatga cgggccccga
+     6421 tagccttcta cgattacgtc cagcaggaac cccacagctt ttccctacgt ctaacaccgt
+     6481 gaaagcaaaa ctgtctgccc ttttacatgg tctttaagga atctctgcac ttatgttatt
+     6541 aggtaagctc ccataagagc accacttcgt gtaccttgct aactcccttc atccccaccc
+     6601 gcgaaaactt aagacgtcac ccctgttatt atcccgtgca ctcctaaagt gcgatgggca
+     6661 agaacgcaaa caattgtctg agatttatat gggcggcgga catagtcaga gagccttata
+     6721 taatctccca cgtcttgcca gtccgagtta tgagaaaccc gggaccgatg acgctattac
+     6781 ggtcgcccag cgaggttcaa cagagcgagg cataggagtc attacgcgtg ttagcttcaa
+     6841 catgcgtgga agtgaaacgg atctataaaa cggcgtggag tcatcagctt gagcagatct
+     6901 aacttactcg ccacgcgcgc aaatcgtctt tcgctgtcca cgttatacgt aactcgctgt
+     6961 cacgctagag accgtatgag gtgggcggat agtggtgact tcaaacccct aagatgccag
+     7021 cgcaatacgg catcgcaggg caagcaacac cgcacagcat gtccctaaag ggaagattta
+     7081 atacggactc agtcaagttg tgagaaacga caatacattg agtggaatgc cctttggtac
+     7141 gttggcgata gatctaacga gaaacttcaa cgagatctag agtatcggac tgagatgcat
+     7201 catggctagg gattgctgaa tggatatctt tgccaaaatg agctcgacta ggaatctcag
+     7261 actgccagct acgaaaagct gggggatatt catttccgct cttgtaaggc gcacgatgac
+     7321 cctgtggagc aaaattcgac gcggcaacgt agtcaaagta cggcctatct gggacggaga
+     7381 tgggattgtt tctgtattca tgccggcctc ttgagattgt aaggataccc ggccacagtc
+     7441 tcgtaagaaa cccgatatcg ctcaaacgaa ttgacatcag ttagggcttg cgctctagca
+     7501 accacgcgtc gggtgttcga ctgaatttaa gatccagcgc aaaccattcc ttaaaggcgg
+     7561 tccaggtgaa accggctctg ataatgtaca gtggattgtc cagttcgctt caaagtgcaa
+     7621 tcaggcaagg tactggcaag tcaccgcttg gggccggttt cagtggagct ttatcgacaa
+     7681 aaggccgggc cctttggcct agagctcact tttggtgtcg ttcacgagtg agaactttgg
+     7741 ctcgcagctt gaatgcttgt cacgtttagg gttatacaac gtttctataa actacctatg
+     7801 acaaatcccg atcttctgaa actccataag gactaagaga gtccgcgaca gtttcacttg
+     7861 gtcggtgcta ttgactatgt cacgcatgcc cggtaaagct tttaagcaaa gcctgatata
+     7921 tcacgggagg ttactcaaag cattttctaa agggacagcg gactcacatt agcctaatat
+     7981 aaacccgatc aggccatgca cctcgattca ccggaaggta gtaccatgca ccggatattt
+     8041 gggacaacag tgaatagtac atcgtaaaat gtcaaggcct agctattttt cactggtgtc
+     8101 ttatctctat tacaacacac acggatgtcc cgagcctaca ctttcaaata tactcaaggt
+     8161 tcgctgttaa gggtaataca agagtgctcg gtttagtatc catatgttgg tacaagtgac
+     8221 tgtgctagcc gtaaattaat tcggcttcca ttccagcttg ggtgtttagg gtctagacgg
+     8281 ttgaaaccag aaagagtaca gacaaaaccg tagctctccc aaggttgatc ctccagacac
+     8341 ctacccacac tagtagcgca ggcctagagg agacgttagg agcggaattg tacattcagt
+     8401 atcgcattaa gcacaaagac agacaaacct agaagccact tatcccctcg taggagtaca
+     8461 acggcagcgc tttcgggagg agttgcctaa ctacgctctg gacagcaagt cccagaatga
+     8521 agaaaatgac ttggcgagaa cccaccacta catgcagggt cttgggaccg gtcagcacag
+     8581 cttatccatg cggcaattcc ggacgaccgc gaatgaggat cacgacactg ccgatgttgc
+     8641 accattgacc ttctcctatg caacaagggc ttaagatggt agatggtaat agagtagcct
+     8701 gcgaccttat gcggtaatac acaaaaaccg gtaaacagtg cgttgatgct gtgtgctggc
+     8761 gcatttgtgt accttgctgg gctcgtataa aattctgtca gcaggacgtt cacctccctt
+     8821 ctgctagtcg ctaggcacaa acggaaaagg tctaatcgcg cgcgtgctcg ttagagtact
+     8881 ggggcctccc accacggatg atcacctcgc cgatacattt ggccttatgt ctcaataaga
+     8941 cctcatggtc tatcctacac catagatttg gaaagtctag ttgctgccta gcaggctgat
+     9001 agcaagcgtc gtacgaggat cgaggaaggg cactcatggg agtgtagcgc tagccatagt
+     9061 tgacctgtca gccggtcaag gttggtccga acctagccag ttagacgacc agctccccca
+     9121 ctattgcaca gtgcctgtat aagcacgtca gtgtctggca ccactgtgcg cggtgtggtc
+     9181 ctcgggacga tcttcctacg gctacccatg cgctagtgat tacagacgat cgttttttct
+     9241 ttttctgtgg tgcaaataca caagatacgt caagagtcct agcagcctca tcttgccaat
+     9301 tgcaggggta ccgattcacc catggtatca gtcacgcaaa aaaagacgac atcggagttg
+     9361 ctggcgactg gcaaaagaaa acatctatct gccgtggcgt tcgtctagcg cagcgagccg
+     9421 actgactact ccgttatctc aaatttagtt tcgtaagatc ttcacgggag ccggccagct
+     9481 gaagaatcta taggtctacc gctagaggaa gcccgtttac aaccgacgta ctagtccgac
+     9541 agcaatcgtc agcatgccaa tttattgtat caggttgaga atgcaccact acggaatcga
+     9601 cgtgccactg gccgcacgat actagtgcgc tggtaaacag gccaggagct ctaaatctgg
+     9661 agtggtgtga atttaaccgc ggaacgattg ttgcacgcgg tccctgtgac tctgttggga
+     9721 gcactgtccc cggctccgga taagtgatgt gaacgaaaag gtgggctgac cagagatagg
+     9781 gttaaggacg ggcgatcgta gtggacgatt actgctgatc ttccgagcac tctgagtcgc
+     9841 gcggcgtatc gggagttacc ccgctcgcta cacatctgaa ttccgccgga tactatgggt
+     9901 gcagagtgga tcaccttttc gtgacccgta tattcgtcgt tctcatcact gtcctccgcg
+     9961 atttatttca atcgtcggtt tcgccagatg cattcctggg gaagtcatcg cgacagtgcg
+    10021 ctgcgcgcac agctcttctt ggtttattcg agattgtggt ttatcaacat ggtctatcta
+    10081 cggactgatt agaatattcc cacgttaagc cgacgtgcat tggtactggc tccttaatta
+    10141 agcgcagagg gtaggcgcct tttcttgtgc aaaccattat atgaggaact agcaaacact
+    10201 atggcgcaat atgtccacgt gactcgagca ttctgtgttg cggtagcgat ttcactagtc
+    10261 acaaacggat agattctacg gcgcacccgg tgcatcgttg tatgttcagc aatttggtca
+    10321 tatcccgctc ctctattcaa tctctttttt cgtcaggggg ggcacatact tggagcagct
+    10381 gcgcctaaca ttacaataag cagtcggagc tcagtacaaa acccttatct tagcggtccg
+    10441 ttctggaatt cggtctcagg agagacactc cttcatcaac agcagaggtt acatacgttt
+    10501 aacctgaccg atggttgccc atcgaaagca aggacccacg ggtaggcagc tgttgtttga
+    10561 tatgcttttg tccccggaag gcgccgataa aattatacgc cgtcccccgc gtccgttacg
+    10621 agcttcgtga tgttgcgggc tgaagttccc tacgagtcaa taggccaact cgaatggcta
+    10681 aatggttgca acccacaggc tcaactttga aggtaatacg ccaaaatcca atatgctctt
+    10741 tcgggtagcg cataaaacct tctgggggcc actgcagaca gtcatggagg actacgtgca
+    10801 acactacgct ctagagtgat gatgtggcag tcaaccgagg gctgttaaga gaagtctgtg
+    10861 cacgaaaatc aatgagtcgg tgtaatcttc accttcctac aaaccaaggc ttgagggcct
+    10921 caatttcgag caccacttct tgaccaagcc gttcgccggt ataggagtta cgaattcggg
+    10981 tcgtctgccg tctttgaacc atagataagt acctcccgag tcgggagaac acgaatcgca
+    11041 tcagaactca tcgaagggtg ttactttgcc catcggcatc cccgaagatt aattgcattc
+    11101 gaaattttaa cttcgagaat catccgtgct aaccaacgtg gacgagctat gaacgtttac
+    11161 gtgttcagta tctaggaatt gacacgtctc cgatagcggg agtcacggca tgagttacgg
+    11221 cttttgtgac cagcgtctgt gtaattttat tgacagtttc atatatagtg tctcgtcttg
+    11281 cctttgagat tcacaggctg taagagggat gccgtcgtgt atatgcctgc agttagagct
+    11341 tccttgtcag gacgagcaac tcactccttc tggtgatgct ttgctagcat gtagcttcgg
+    11401 gtacttgcgg aaaaggacag cctacagtgt ctgcggcggt acgtcactaa tatgacatac
+    11461 gctgtggaca tcgtgaagcg gcgaatcgct ccagattgag gtttacagag tactccatag
+    11521 tcacacaact
+//
--- /dev/null	Thu Jan 01 00:00:00 1970 +0000
+++ b/test-data/init/2-step-golden_gate_plan_simulation/all_construct_records/construct_4.gb	Fri May 16 11:32:06 2025 +0000
@@ -0,0 +1,350 @@
+LOCUS       construct_4             8074 bp    DNA     circular UNK 01-JAN-1980
+DEFINITION  .
+ACCESSION   construct_4
+VERSION     construct_4
+KEYWORDS    .
+SOURCE      .
+  ORGANISM  .
+            .
+FEATURES             Location/Qualifiers
+     homology        1..4
+                     /label="CAGA"
+                     /color="#f7e8f7"
+                     /ApEinfo_fwdcolor="#f7e8f7"
+     homology        5..8
+                     /label="GGAG"
+                     /color="#f7e8f7"
+                     /ApEinfo_fwdcolor="#f7e8f7"
+     misc_feature    9..1093
+                     /source="part_G"
+                     /indicates_part=True
+                     /note="From part_G"
+                     /color="white"
+                     /ApEinfo_fwdcolor="white"
+     homology        1094..1097
+                     /label="AATG"
+                     /color="#f7e8f7"
+                     /ApEinfo_fwdcolor="#f7e8f7"
+     misc_feature    1098..2746
+                     /source="part_H"
+                     /indicates_part=True
+                     /note="From part_H"
+                     /color="white"
+                     /ApEinfo_fwdcolor="white"
+     homology        2747..2750
+                     /label="GCTT"
+                     /color="#f7e8f7"
+                     /ApEinfo_fwdcolor="#f7e8f7"
+     misc_feature    2751..3085
+                     /label="feature"
+                     /ApEinfo_fwdcolor="#f8d3a9"
+     misc_feature    2751..3085
+                     /source="part_I"
+                     /indicates_part=True
+                     /note="From part_I"
+                     /color="white"
+                     /ApEinfo_fwdcolor="white"
+     homology        3086..3089
+                     /label="GGTA"
+                     /color="#f7e8f7"
+                     /ApEinfo_fwdcolor="#f7e8f7"
+     misc_feature    3090..3498
+                     /label="another feature"
+                     /ApEinfo_fwdcolor="#faac61"
+     primer_bind     complement(3387..3407)
+                     /label="yet another feature"
+                     /ApEinfo_fwdcolor="#85dae9"
+     misc_feature    3090..3498
+                     /source="part_F"
+                     /indicates_part=True
+                     /note="From part_F"
+                     /color="white"
+                     /ApEinfo_fwdcolor="white"
+     homology        3499..3502
+                     /label="CGCT"
+                     /color="#f7e8f7"
+                     /ApEinfo_fwdcolor="#f7e8f7"
+     misc_feature    3420^3421
+                     /source="part_A"
+                     /indicates_part=True
+                     /note="From part_A"
+                     /color="white"
+                     /ApEinfo_fwdcolor="white"
+     misc_feature    6918^6919
+                     /source="part_A"
+                     /indicates_part=True
+                     /note="From part_A"
+                     /color="white"
+                     /ApEinfo_fwdcolor="white"
+     misc_feature    5..3502
+                     /source="construct_2"
+                     /indicates_part=True
+                     /note="From construct_2"
+                     /color="white"
+                     /ApEinfo_fwdcolor="white"
+     homology        3503..3506
+                     /label="GTCA"
+                     /color="#f7e8f7"
+                     /ApEinfo_fwdcolor="#f7e8f7"
+     misc_feature    3507..3510
+                     /label="feature"
+                     /ApEinfo_fwdcolor="#ff0000"
+     misc_feature    3507..3548
+                     /source="part_L"
+                     /indicates_part=True
+                     /note="From part_L"
+                     /color="white"
+                     /ApEinfo_fwdcolor="white"
+     homology        3549..3552
+                     /label="ACCC"
+                     /color="#f7e8f7"
+                     /ApEinfo_fwdcolor="#f7e8f7"
+     CDS             complement(3746..4537)
+                     /label="feature"
+                     /ApEinfo_fwdcolor="#b7e6d7"
+     CDS             complement(3746..4651)
+                     /label="feature"
+                     /ApEinfo_fwdcolor="#993366"
+     misc_feature    3617..3645
+                     /label="another feature"
+                     /ApEinfo_fwdcolor="#b4abac"
+     -35_signal      4962..4967
+                     /label="yet another feature"
+                     /ApEinfo_fwdcolor="#b4abac"
+     misc_feature    3722..3745
+                     /label="another feature"
+                     /ApEinfo_fwdcolor="#b4abac"
+     -10_signal      4940..4945
+                     /label="feature"
+                     /ApEinfo_fwdcolor="#b4abac"
+     -35_signal      4785..4790
+                     /label="feature"
+                     /ApEinfo_fwdcolor="#b4abac"
+     misc_RNA        4821..5373
+                     /label="another feature"
+                     /ApEinfo_fwdcolor="#b4abac"
+     misc_feature    3560..3670
+                     /label="feature"
+                     /ApEinfo_fwdcolor="#b4abac"
+     misc_RNA        complement(4824..4931)
+                     /label="another feature"
+                     /ApEinfo_fwdcolor="#b4abac"
+     misc_feature    5460..5468
+                     /label="yet another feature"
+                     /ApEinfo_fwdcolor="#b4abac"
+     misc_feature    complement(3672..3712)
+                     /label="yet another feature"
+                     /ApEinfo_fwdcolor="#c6c9d1"
+     misc_feature    4735..4758
+                     /label="feature"
+                     /ApEinfo_fwdcolor="#b4abac"
+     -10_signal      4806..4811
+                     /label="yet another feature"
+                     /ApEinfo_fwdcolor="#b4abac"
+     gene            complement(3746..4651)
+                     /label="another feature"
+                     /ApEinfo_fwdcolor="#b4abac"
+     rep_origin      4785..5373
+                     /label="yet another feature"
+                     /ApEinfo_fwdcolor="#ffef86"
+     misc_feature    3584..3607
+                     /label="another feature"
+                     /ApEinfo_fwdcolor="#b4abac"
+     misc_feature    3553..3558
+                     /label="feature"
+                     /ApEinfo_fwdcolor="#84b0dc"
+     misc_feature    6763..6786
+                     /label="another feature"
+                     /ApEinfo_fwdcolor="#b4abac"
+     misc_feature    6942..6972
+                     /label="yet another feature"
+                     /ApEinfo_fwdcolor="#b4abac"
+     CDS             5743..6762
+                     /label="feature"
+                     /ApEinfo_fwdcolor="#993366"
+     gene            5743..6762
+                     /label="yet another feature"
+                     /ApEinfo_fwdcolor="#b4abac"
+     misc_feature    6985..7002
+                     /label="yet another feature"
+                     /ApEinfo_fwdcolor="#b4abac"
+     misc_feature    6895..6919
+                     /label="yet another feature"
+                     /ApEinfo_fwdcolor="#b4abac"
+     misc_feature    6946..6970
+                     /label="feature"
+                     /ApEinfo_fwdcolor="#f8d3a9"
+     misc_feature    6787..6834
+                     /label="feature"
+                     /ApEinfo_fwdcolor="#c6c9d1"
+     misc_feature    6990..6995
+                     /label="feature"
+                     /ApEinfo_fwdcolor="#84b0dc"
+     terminator      6985..6987
+                     /label="yet another feature"
+                     /ApEinfo_fwdcolor="#c6c9d1"
+     misc_feature    3553..7002
+                     /source="part_J"
+                     /indicates_part=True
+                     /note="From part_J"
+                     /color="white"
+                     /ApEinfo_fwdcolor="white"
+     homology        7003..7006
+                     /label="GGAG"
+                     /color="#f7e8f7"
+                     /ApEinfo_fwdcolor="#f7e8f7"
+     promoter        7083..7261
+                     /label="another feature"
+                     /ApEinfo_fwdcolor="#c6c9d1"
+     misc_feature    8071..8074
+                     /label="yet another feature"
+                     /ApEinfo_fwdcolor="#ff0000"
+     terminator      7818..8070
+                     /label="feature"
+                     /ApEinfo_fwdcolor="#c6c9d1"
+     CDS             7263..7813
+                     /label="another feature"
+                     /ApEinfo_fwdcolor="#b7e6d7"
+     misc_feature    7007..8074
+                     /source="part_K"
+                     /indicates_part=True
+                     /note="From part_K"
+                     /color="white"
+                     /ApEinfo_fwdcolor="white"
+ORIGIN
+        1 cagaggagga acttctatgg gacgaaagat gcgcagctcg acaaatctca aattggaaac
+       61 cgtctaaggt ctttgagccc acgctaggcc accgaatagt tgcgagctcg tgggcaattg
+      121 ctggctagcg gtttgtatcg tatacgtaac aagagattgc gccggattca ttcgtgtggg
+      181 gtgctttcac atcggaatac tcaagagtgg gggtttgcgc tttaatatga cggcctcatg
+      241 caccccaaaa ataagagcgc caatttcatc gaccacattc cggacaattc tgacttccct
+      301 gtcggatcga ccctcgctca caactcctag aactccaaga cggtaggacg tcagccgaaa
+      361 aggaggagtg acgacgggcc ctcctagctg aagcaatggg gggcgtcgac cctagcctgg
+      421 tgtgggactt cggagggtcg ggcgtgtggc cattcctgca cgaggggccc ttgcagtatc
+      481 gaactttgac gagaaagtgg ggggcgacct ataaacatag cggagttcaa tactcctgca
+      541 agtgcatgat gacgttcagc gttggcacat cgaacgcgtc gctacacttg ctcaccggaa
+      601 ggcaaaatag accggcagct ggcccgcacg gacgtctaga ctcctacgct gtcaaatgca
+      661 cgatgactat tagcatgcgg aattcgaggc ggccggtaca tcgagacacg ctggtcttaa
+      721 tacctgtgtt atgtcaaaac aagtgtctcg gcggctttgt actacgctgt gaatgcgcat
+      781 gatgttgcga gaagctgaac gttggtagca gtctacaaca gaaccgacga gctacggacg
+      841 ggttacagca ggatcccctc ttaaggcatt attcgacgac tccaggttct aaccgatcag
+      901 taattgcctc ggatggtcgt acgtgttaac cgagacagca aggcaccaca tagacaactg
+      961 catagggcgc ctacaggtcc acaatcaggg tggcccaaga tcctcaaaga cttgttgcag
+     1021 tctctgctta ttccgtttaa cacgttgtgt gagctctagc ttactacctc atcggtgtcg
+     1081 ggagtgattt aggaatggaa gacgcgttta gtcttcggcc cccagacggc accggcagag
+     1141 ccactgccaa tgccttttac gctgaactct tcgactttgg catgtgcgac tgactatacg
+     1201 ccgatggccc taccctgcag cggaaaggca cagggccaaa aacagtggaa gcgcaccgct
+     1261 agagctttac taaatccttt agggtgaacc ggtgttcagt caacagaaac atatgactag
+     1321 tccttaatgg cactactaaa ggcggcccat ctcttttgta ggtcacgtct catcgtttag
+     1381 caagcgtccg ccatccgagg agtatcctag tacgtgagag ggtgttttac ctcatcacat
+     1441 ggtttttggc tagatgtggc agatgccagc tgatacctta caacccgcta taacggtttc
+     1501 tggatcgacg atacaacctg cttcggcata tcataatggc ggcctcatag gacttccaat
+     1561 catggttatg cgagtttgat gtgttgaaga ttgtgagggg aaaccttttt ccgagtacgt
+     1621 tgaatctgcg actgatggtg aacaactcat cgagagggat gtgcgggcag tctccttgat
+     1681 gcgcgaaaag gagtcgcgac cgcgtgttcg tgacgcactt gatgctagac cgtaggggct
+     1741 cattatctcc tgaaacagta gctagctttt ggtgtccgag tcagcttagg cacagtaatt
+     1801 gaaaagaagg aaatgcgtga aaactaaacg tagacactcc ttgctaagaa ttccctggtc
+     1861 tttttcgagc atagactacc gtaggtaaaa ggcttgtcgt gtcacaaata gacttgatct
+     1921 gttcggcata tacacatcct actgcttcag taaccaagga cgattctccg gccattggac
+     1981 tgtgggacca cccgcgttca aacggaatcc tctacgaacg gttaagaaag gagcccactg
+     2041 cttgcggaga catatcgttg ctgagtggta caccggtgag tcaaaaagta ctgacactac
+     2101 tggtggactc tcgggtacga tgtgtggggt attggcatac tatggcgcta agcgtggaat
+     2161 agtgtttcca atagcccttt acctaagaag cattctgaca catgggttgg acttttacac
+     2221 agacctataa ctcgtatccg gcctggtgat gtatgtccgc ttatcactga atgcaggatt
+     2281 ccgccaattc cgctcgcggg ttctcggaca acgggccatg gagatggatc aatgagccat
+     2341 gttgattacc atttcactac acacggttag tcaattccgg agatcataat tcgacaattg
+     2401 aatatgcgtg atacgctttc tgttaccagg atcgttgcta attagtttcc aatgtcacag
+     2461 tgttgggcgg cgaggtatca cggcgctctg ggtagaatgg cggtgcctga ctggacctca
+     2521 taactggtaa catacctatg accaaaggag gtcagacacc gatgagtcgg tgacatgggc
+     2581 ggtcacagcg tgccctgcat agtaatacag ctcgtttcta gacatttgtc ctaattcgcc
+     2641 acacaagtac gagagcgggg gtaacccatc accatcgtgc ccgtaggtac ctaatcttca
+     2701 tcgagcgcta ttgttaaagt ggactcaggg atcggcatct cgtgtagctt ttattatccg
+     2761 gcatgcatgc ggcgttgcat cgcttcatcg tcatcgacat atcgttagcg ggacttatca
+     2821 gggtcccatc acggctgtga cagctgttca taagtgtaat agcagtcacc ccaccaaatg
+     2881 caagactgtt cccaaactaa gtgctaggga ggttggctac ctatcggcgt ggcagttgac
+     2941 cgggtttttc ttagtacctg ccttccaatc tccgataaaa gcaagatgac ttcctgcttg
+     3001 cgctaaagtc tgaattcgct aagggggcag attcattacc agagactgcc aaagtcaacc
+     3061 gccgaacgat actggaatat atggaggtaa gctcccataa gagcaccact tcgtgtacct
+     3121 tgctaactcc cttcatcccc acccgcgaaa acttaagacg tcacccctgt tattatcccg
+     3181 tgcactccta aagtgcgatg ggcaagaacg caaacaattg tctgagattt atatgggcgg
+     3241 cggacatagt cagagagcct tatataatct cccacgtctt gccagtccga gttatgagaa
+     3301 acccgggacc gatgacgcta ttacggtcgc ccagcgaggt tcaacagagc gaggcatagg
+     3361 agtcattacg cgtgttagct tcaacatgcg tggaagtgaa acggatctat aaaacggcgt
+     3421 ggagtcatca gcttgagcag atctaactta ctcgccacgc gcgcaaatcg tctttcgctg
+     3481 tccacgttat acgtaactcg ctgtcacgct agagaccgta tgaggtgggc ggatagtggt
+     3541 gacttcaaac ccctaagatg ccagcgcaat acggcatcgc agggcaagca acaccgcaca
+     3601 gcatgtccct aaagggaaga tttaatacgg actcagtcaa gttgtgagaa acgacaatac
+     3661 attgagtgga atgccctttg gtacgttggc gatagatcta acgagaaact tcaacgagat
+     3721 ctagagtatc ggactgagat gcatcatggc tagggattgc tgaatggata tctttgccaa
+     3781 aatgagctcg actaggaatc tcagactgcc agctacgaaa agctggggga tattcatttc
+     3841 cgctcttgta aggcgcacga tgaccctgtg gagcaaaatt cgacgcggca acgtagtcaa
+     3901 agtacggcct atctgggacg gagatgggat tgtttctgta ttcatgccgg cctcttgaga
+     3961 ttgtaaggat acccggccac agtctcgtaa gaaacccgat atcgctcaaa cgaattgaca
+     4021 tcagttaggg cttgcgctct agcaaccacg cgtcgggtgt tcgactgaat ttaagatcca
+     4081 gcgcaaacca ttccttaaag gcggtccagg tgaaaccggc tctgataatg tacagtggat
+     4141 tgtccagttc gcttcaaagt gcaatcaggc aaggtactgg caagtcaccg cttggggccg
+     4201 gtttcagtgg agctttatcg acaaaaggcc gggccctttg gcctagagct cacttttggt
+     4261 gtcgttcacg agtgagaact ttggctcgca gcttgaatgc ttgtcacgtt tagggttata
+     4321 caacgtttct ataaactacc tatgacaaat cccgatcttc tgaaactcca taaggactaa
+     4381 gagagtccgc gacagtttca cttggtcggt gctattgact atgtcacgca tgcccggtaa
+     4441 agcttttaag caaagcctga tatatcacgg gaggttactc aaagcatttt ctaaagggac
+     4501 agcggactca cattagccta atataaaccc gatcaggcca tgcacctcga ttcaccggaa
+     4561 ggtagtacca tgcaccggat atttgggaca acagtgaata gtacatcgta aaatgtcaag
+     4621 gcctagctat ttttcactgg tgtcttatct ctattacaac acacacggat gtcccgagcc
+     4681 tacactttca aatatactca aggttcgctg ttaagggtaa tacaagagtg ctcggtttag
+     4741 tatccatatg ttggtacaag tgactgtgct agccgtaaat taattcggct tccattccag
+     4801 cttgggtgtt tagggtctag acggttgaaa ccagaaagag tacagacaaa accgtagctc
+     4861 tcccaaggtt gatcctccag acacctaccc acactagtag cgcaggccta gaggagacgt
+     4921 taggagcgga attgtacatt cagtatcgca ttaagcacaa agacagacaa acctagaagc
+     4981 cacttatccc ctcgtaggag tacaacggca gcgctttcgg gaggagttgc ctaactacgc
+     5041 tctggacagc aagtcccaga atgaagaaaa tgacttggcg agaacccacc actacatgca
+     5101 gggtcttggg accggtcagc acagcttatc catgcggcaa ttccggacga ccgcgaatga
+     5161 ggatcacgac actgccgatg ttgcaccatt gaccttctcc tatgcaacaa gggcttaaga
+     5221 tggtagatgg taatagagta gcctgcgacc ttatgcggta atacacaaaa accggtaaac
+     5281 agtgcgttga tgctgtgtgc tggcgcattt gtgtaccttg ctgggctcgt ataaaattct
+     5341 gtcagcagga cgttcacctc ccttctgcta gtcgctaggc acaaacggaa aaggtctaat
+     5401 cgcgcgcgtg ctcgttagag tactggggcc tcccaccacg gatgatcacc tcgccgatac
+     5461 atttggcctt atgtctcaat aagacctcat ggtctatcct acaccataga tttggaaagt
+     5521 ctagttgctg cctagcaggc tgatagcaag cgtcgtacga ggatcgagga agggcactca
+     5581 tgggagtgta gcgctagcca tagttgacct gtcagccggt caaggttggt ccgaacctag
+     5641 ccagttagac gaccagctcc cccactattg cacagtgcct gtataagcac gtcagtgtct
+     5701 ggcaccactg tgcgcggtgt ggtcctcggg acgatcttcc tacggctacc catgcgctag
+     5761 tgattacaga cgatcgtttt ttctttttct gtggtgcaaa tacacaagat acgtcaagag
+     5821 tcctagcagc ctcatcttgc caattgcagg ggtaccgatt cacccatggt atcagtcacg
+     5881 caaaaaaaga cgacatcgga gttgctggcg actggcaaaa gaaaacatct atctgccgtg
+     5941 gcgttcgtct agcgcagcga gccgactgac tactccgtta tctcaaattt agtttcgtaa
+     6001 gatcttcacg ggagccggcc agctgaagaa tctataggtc taccgctaga ggaagcccgt
+     6061 ttacaaccga cgtactagtc cgacagcaat cgtcagcatg ccaatttatt gtatcaggtt
+     6121 gagaatgcac cactacggaa tcgacgtgcc actggccgca cgatactagt gcgctggtaa
+     6181 acaggccagg agctctaaat ctggagtggt gtgaatttaa ccgcggaacg attgttgcac
+     6241 gcggtccctg tgactctgtt gggagcactg tccccggctc cggataagtg atgtgaacga
+     6301 aaaggtgggc tgaccagaga tagggttaag gacgggcgat cgtagtggac gattactgct
+     6361 gatcttccga gcactctgag tcgcgcggcg tatcgggagt taccccgctc gctacacatc
+     6421 tgaattccgc cggatactat gggtgcagag tggatcacct tttcgtgacc cgtatattcg
+     6481 tcgttctcat cactgtcctc cgcgatttat ttcaatcgtc ggtttcgcca gatgcattcc
+     6541 tggggaagtc atcgcgacag tgcgctgcgc gcacagctct tcttggttta ttcgagattg
+     6601 tggtttatca acatggtcta tctacggact gattagaata ttcccacgtt aagccgacgt
+     6661 gcattggtac tggctcctta attaagcgca gagggtaggc gccttttctt gtgcaaacca
+     6721 ttatatgagg aactagcaaa cactatggcg caatatgtcc acgtgactcg agcattctgt
+     6781 gttgcggtag cgatttcact agtcacaaac ggatagattc tacggcgcac ccggtgcatc
+     6841 gttgtatgtt cagcaatttg gtcatatccc gctcctctat tcaatctctt ttttcgtcag
+     6901 ggggggcaca tacttggagc agctgcgcct aacattacaa taagcagtcg gagctcagta
+     6961 caaaaccctt atcttagcgg tccgttctgg aattcggtct caggagagac actccttcat
+     7021 caacagcaga ggttacatac gtttaacctg accgatggtt gcccatcgaa agcaaggacc
+     7081 cacgggtagg cagctgttgt ttgatatgct tttgtccccg gaaggcgccg ataaaattat
+     7141 acgccgtccc ccgcgtccgt tacgagcttc gtgatgttgc gggctgaagt tccctacgag
+     7201 tcaataggcc aactcgaatg gctaaatggt tgcaacccac aggctcaact ttgaaggtaa
+     7261 tacgccaaaa tccaatatgc tctttcgggt agcgcataaa accttctggg ggccactgca
+     7321 gacagtcatg gaggactacg tgcaacacta cgctctagag tgatgatgtg gcagtcaacc
+     7381 gagggctgtt aagagaagtc tgtgcacgaa aatcaatgag tcggtgtaat cttcaccttc
+     7441 ctacaaacca aggcttgagg gcctcaattt cgagcaccac ttcttgacca agccgttcgc
+     7501 cggtatagga gttacgaatt cgggtcgtct gccgtctttg aaccatagat aagtacctcc
+     7561 cgagtcggga gaacacgaat cgcatcagaa ctcatcgaag ggtgttactt tgcccatcgg
+     7621 catccccgaa gattaattgc attcgaaatt ttaacttcga gaatcatccg tgctaaccaa
+     7681 cgtggacgag ctatgaacgt ttacgtgttc agtatctagg aattgacacg tctccgatag
+     7741 cgggagtcac ggcatgagtt acggcttttg tgaccagcgt ctgtgtaatt ttattgacag
+     7801 tttcatatat agtgtctcgt cttgcctttg agattcacag gctgtaagag ggatgccgtc
+     7861 gtgtatatgc ctgcagttag agcttccttg tcaggacgag caactcactc cttctggtga
+     7921 tgctttgcta gcatgtagct tcgggtactt gcggaaaagg acagcctaca gtgtctgcgg
+     7981 cggtacgtca ctaatatgac atacgctgtg gacatcgtga agcggcgaat cgctccagat
+     8041 tgaggtttac agagtactcc atagtcacac aact
+//
Binary file test-data/init/2-step-golden_gate_plan_simulation/assembly_plan_graph.pdf has changed
--- /dev/null	Thu Jan 01 00:00:00 1970 +0000
+++ b/test-data/init/2-step-golden_gate_plan_simulation/construct_1/construct_1.gb	Fri May 16 11:32:06 2025 +0000
@@ -0,0 +1,385 @@
+LOCUS       construct_1            10366 bp    DNA     circular UNK 01-JAN-1980
+DEFINITION  .
+ACCESSION   construct_1
+VERSION     construct_1
+KEYWORDS    .
+SOURCE      .
+  ORGANISM  .
+            .
+FEATURES             Location/Qualifiers
+     homology        1..4
+                     /label="CGCT"
+                     /color="#f7e8f7"
+                     /ApEinfo_fwdcolor="#f7e8f7"
+     misc_feature    9..25
+                     /label="feature"
+                     /ApEinfo_fwdcolor="#b4abac"
+     CDS             complement(223..1038)
+                     /label="yet another feature"
+                     /ApEinfo_fwdcolor="#993366"
+     misc_feature    complement(139..179)
+                     /label="yet another feature"
+                     /ApEinfo_fwdcolor="#c6c9d1"
+     misc_feature    5..8
+                     /label="yet another feature"
+                     /ApEinfo_fwdcolor="#faac61"
+     misc_feature    20..25
+                     /label="feature"
+                     /ApEinfo_fwdcolor="#84b0dc"
+     gene            complement(223..1038)
+                     /label="another feature"
+                     /ApEinfo_fwdcolor="#b4abac"
+     misc_feature    189..212
+                     /label="feature"
+                     /ApEinfo_fwdcolor="#b4abac"
+     misc_feature    51..74
+                     /label="another feature"
+                     /ApEinfo_fwdcolor="#b4abac"
+     misc_feature    84..112
+                     /label="feature"
+                     /ApEinfo_fwdcolor="#b4abac"
+     misc_feature    27..137
+                     /label="yet another feature"
+                     /ApEinfo_fwdcolor="#b4abac"
+     misc_feature    3347..3377
+                     /label="another feature"
+                     /ApEinfo_fwdcolor="#b4abac"
+     -35_signal      1367..1372
+                     /label="another feature"
+                     /ApEinfo_fwdcolor="#b4abac"
+     gene            2148..3167
+                     /label="yet another feature"
+                     /ApEinfo_fwdcolor="#b4abac"
+     -35_signal      1190..1195
+                     /label="feature"
+                     /ApEinfo_fwdcolor="#b4abac"
+     misc_RNA        1226..1778
+                     /label="feature"
+                     /ApEinfo_fwdcolor="#b4abac"
+     misc_feature    3396
+                     /label="another feature"
+                     /ApEinfo_fwdcolor="#84b0dc"
+     misc_feature    3192..3239
+                     /label="feature"
+                     /ApEinfo_fwdcolor="#c6c9d1"
+     misc_RNA        complement(1229..1336)
+                     /label="yet another feature"
+                     /ApEinfo_fwdcolor="#b4abac"
+     misc_feature    1865..1873
+                     /label="feature"
+                     /ApEinfo_fwdcolor="#b4abac"
+     misc_feature    3413..3416
+                     /label="another feature"
+                     /ApEinfo_fwdcolor="#faac61"
+     rep_origin      1190..1778
+                     /label="yet another feature"
+                     /ApEinfo_fwdcolor="#ffef86"
+     misc_feature    3300..3324
+                     /label="feature"
+                     /ApEinfo_fwdcolor="#b4abac"
+     -10_signal      1345..1350
+                     /label="another feature"
+                     /ApEinfo_fwdcolor="#b4abac"
+     rep_origin      1899..2147
+                     /label="feature"
+                     /ApEinfo_fwdcolor="#ffef86"
+     misc_feature    3397..3401
+                     /label="yet another feature"
+                     /ApEinfo_fwdcolor="#84b0dc"
+     misc_feature    3395..3412
+                     /label="yet another feature"
+                     /ApEinfo_fwdcolor="#b4abac"
+     -10_signal      1211..1216
+                     /label="feature"
+                     /ApEinfo_fwdcolor="#b4abac"
+     misc_feature    3168..3191
+                     /label="another feature"
+                     /ApEinfo_fwdcolor="#b4abac"
+     CDS             2148..3167
+                     /label="yet another feature"
+                     /ApEinfo_fwdcolor="#993366"
+     misc_feature    3351..3375
+                     /label="feature"
+                     /ApEinfo_fwdcolor="#f8d3a9"
+     misc_feature    1140..1163
+                     /label="another feature"
+                     /ApEinfo_fwdcolor="#b4abac"
+     misc_feature    5..3416
+                     /source="part_A"
+                     /indicates_part=True
+                     /note="From part_A"
+                     /color="white"
+                     /ApEinfo_fwdcolor="white"
+     homology        3417..3420
+                     /label="GGAG"
+                     /color="#f7e8f7"
+                     /ApEinfo_fwdcolor="#f7e8f7"
+     exon            5421..5618
+                     /label="feature"
+                     /ApEinfo_fwdcolor="#75c6a9"
+     gene            5421..5618
+                     /label="another feature"
+                     /ApEinfo_fwdcolor="#faac61"
+     misc_feature    3421..5618
+                     /label="another feature"
+                     /ApEinfo_fwdcolor="#f58a5e"
+     misc_feature    3421..5618
+                     /source="part_B"
+                     /indicates_part=True
+                     /note="From part_B"
+                     /color="white"
+                     /ApEinfo_fwdcolor="white"
+     homology        5619..5622
+                     /label="AATG"
+                     /color="#f7e8f7"
+                     /ApEinfo_fwdcolor="#f7e8f7"
+     CDS             5623..8880
+                     /label="feature"
+                     /ApEinfo_fwdcolor="#ffef86"
+     CDS             8881..9009
+                     /label="another feature"
+                     /ApEinfo_fwdcolor="#ffef86"
+     misc_feature    8091
+                     /label="yet another feature"
+                     /ApEinfo_fwdcolor="#b1ff67"
+     misc_feature    8736
+                     /label="another feature"
+                     /ApEinfo_fwdcolor="#b1ff67"
+     misc_feature    7683
+                     /label="yet another feature"
+                     /ApEinfo_fwdcolor="#b1ff67"
+     misc_feature    5623..9011
+                     /source="part_C"
+                     /indicates_part=True
+                     /note="From part_C"
+                     /color="white"
+                     /ApEinfo_fwdcolor="white"
+     homology        9012..9015
+                     /label="TTCG"
+                     /color="#f7e8f7"
+                     /ApEinfo_fwdcolor="#f7e8f7"
+     misc_feature    9604..9633
+                     /label="another feature"
+                     /ApEinfo_fwdcolor="#b1ff67"
+     CDS             9016..9528
+                     /label="feature"
+                     /ApEinfo_fwdcolor="#84b0dc"
+     misc_feature    9538..9603
+                     /label="feature"
+                     /ApEinfo_fwdcolor="#b7e6d7"
+     CDS             9580..9603
+                     /label="another feature"
+                     /ApEinfo_fwdcolor="#84b0dc"
+     misc_feature    9016..9636
+                     /source="part_D"
+                     /indicates_part=True
+                     /note="From part_D"
+                     /color="white"
+                     /ApEinfo_fwdcolor="white"
+     homology        9637..9640
+                     /label="GCTT"
+                     /color="#f7e8f7"
+                     /ApEinfo_fwdcolor="#f7e8f7"
+     3'UTR           9644..9953
+                     /label="feature"
+                     /ApEinfo_fwdcolor="#c6c9d1"
+     misc_feature    9641..9643
+                     /label="yet another feature"
+                     /ApEinfo_fwdcolor="#b1ff67"
+     misc_feature    9641..9953
+                     /source="part_E"
+                     /indicates_part=True
+                     /note="From part_E"
+                     /color="white"
+                     /ApEinfo_fwdcolor="white"
+     homology        9954..9957
+                     /label="GGTA"
+                     /color="#f7e8f7"
+                     /ApEinfo_fwdcolor="#f7e8f7"
+     misc_feature    9958..10366
+                     /label="another feature"
+                     /ApEinfo_fwdcolor="#faac61"
+     primer_bind     complement(10255..10275)
+                     /label="yet another feature"
+                     /ApEinfo_fwdcolor="#85dae9"
+     misc_feature    9958..10366
+                     /source="part_F"
+                     /indicates_part=True
+                     /note="From part_F"
+                     /color="white"
+                     /ApEinfo_fwdcolor="white"
+ORIGIN
+        1 cgctgtcaat atgcaggtgc tgcaggaatt tgtctccaat cgacttgaga tatcgcaagc
+       61 atgaaattat attagacacg ccagagaact tgggaagcag cactggtagt gatagcaacc
+      121 cgagtacagt aacgagtgag cttctgatca tgagctctcc tacggcgtca atgcgacgaa
+      181 tgcccagcat gcactctcgc tatccatgcc tgctagggtg gcattatgct caggaacagt
+      241 tgtagcttgg atatcgtcta gatgaaatac ctggacactg gttagcgtcg tcaagcacca
+      301 aggacattca cacgctcgcg gtctttcgtc tccctaagcg ttcggcagtc gggcgtgaag
+      361 aggttgtaat cagacggaac aaagcctgaa aaaattccag cgacgtagta ttcatgatcc
+      421 tgtaccatct gtagccgccg cggcgcacga ttgaatgtag gctactaacc ccatccgtgt
+      481 tagcgatgtg agtttctacc gcaacgaatg ctcaagcgaa ccttcttctt tcgtccgcaa
+      541 cccacaagcc gtggttatga cagctaaatt gtcccagaca tccctttatt acacaagagc
+      601 tccagcggaa tacctagtca cagcggtaat gacacaaagc tcttagttag tccagggact
+      661 acttctgtct acagcacatc acactcatta tcagcatcag tgtagagacg gagaacatgg
+      721 gctatcctat accaagatcc gccatctaaa catttgaagt ttcccgtctt ctataactta
+      781 gcactcgacg ctattctgct gagtgcgctt agtctgtagc gacttgcgaa atccataaac
+      841 tgagaattga aagagagtgc ataaccgaaa cctttgtggc atatttccgt tgaaacgtac
+      901 cagaacagcc gtttagtgcg gaacatacag tatcctgata aagcactcaa cccaacagac
+      961 accctatgcc gatagcggga tgctaacaag tatagtcatg atgatttctc ggacagcggg
+     1021 gtttggtaca gctgcaatcc gtgatttaaa ttcggacctc tgcacacacc gacggttacc
+     1081 catatcctct acggctgtag gaagttttac cttggatgtc attctgattt cggcgtatct
+     1141 cacaggatgg tccaacgaaa ctaggcttta gacgagggat gaatgaccga cccccactcg
+     1201 tggcactaac ggacagactt ccctgacggt tattcgacca ttaaagtcag acatgcgggg
+     1261 gtgaataaat tagccaaatt gtgtcgaaga aaagacgtgc ggctggcaca taaggcagtc
+     1321 ttgatcctag tcttgcaggg atgcacgtaa gtcgcctcaa ttaactgcag ccgagctcca
+     1381 ggttaccaaa gaccctagta tgccagggcc taacggttgg agtatattat gggtacgcaa
+     1441 tagtgcggaa gttaacctgg gcaacatcca ggtgagaggt tggacggaag cgacagtaag
+     1501 tggccataga ctgccgagtc gtgttaatga atcgctatac gcccatggag ttgtggggtc
+     1561 gttttatccg agtaggggcc cgctgactac ttcgtccaga caatatgccg tcttcaatag
+     1621 tctacctgag agtcatgccg gcatttccga cgctgagtga aacccgcgta gccaggcgaa
+     1681 atttgcatct tgaaatacca ctgcagatca gccagtaagg cccatataag ggcgctggtg
+     1741 ttctggcgac agataaagtg ttatctaatg taacccgcgg acttttagag gatacttgaa
+     1801 tgcgggcata tcgtcccacc agcgtcacgt ggtcgggcta gcggcagaca aactctgccg
+     1861 atgtttttct ttgccgcgat agcgggctag tcaattcact atccggcgat gaagcataga
+     1921 ttgttatcgc gcttatgcgg aggataatca agtcttggca gaacctgctc gctcatgcac
+     1981 tggtgaggcg tggttatcct aacaaccgcc taggacgaag aatgggctcg gtagggacag
+     2041 ttcgtgcgtt tagcttcgtc ccatcttaat gctgtctgga gggaggctac atgcgaacag
+     2101 aagccgtggg cgaaagttgt tgatccgggt ctaacacgga taagggccat ggtgaacgca
+     2161 tcatgcgata cttcttggta gttcttctaa catgaccgtg ccatagccct taccctttga
+     2221 agaagttaac ctatctgccg tctcctgcac gaatagcgac tggactcggg tattttggat
+     2281 acctcacgaa agcacttcga tcggccgaag catggatatt tcgccggacg ggcccgaata
+     2341 gagagccttg tatgtcggtt agtacaacgc agtcctggag acatctacgc ggatgggcct
+     2401 aggggctgga cttaacattg ggtaacgtac ctggtccaaa gtgaatgcaa agcactttta
+     2461 caaagcgcgg gtccccgtgg gtgtttaggg tagaagattg gcggatgcta cgaacgatcc
+     2521 cgctttgaaa ctatcattac atcgtgtaaa agagacactt aacaaaggcc aataaactgc
+     2581 cagtaagaat cgctcagtgc ggtgctgggg acgctaagta ggggcaacag ccagtgaagg
+     2641 acgtgaccga cctttctcag ataagatatg ctggcgtcta tctaataagc atagtgaaaa
+     2701 accaaccatt tcacttacac gaagtacatt tgcattgcta gtaaagacgc ctaaacagaa
+     2761 gtgcccttgc atgctgtatg tctatagtcc ttagggaagc atcagccctt ctacttattc
+     2821 gaggtctgag aaaccctgga caagctccga attattcaat gtgcctgtct ccgaggttag
+     2881 atagcgctat gctcttaaga gttgcacaga atgaccatcc tggaatgtcc ctggaggggt
+     2941 ctaggtatgc tgatcgaagg gtgctctaag gacttgacgt gcgtccgagg agggtgctgc
+     3001 ctccttcgcc tttagatcca acgcggatca catgcgcgtg agctaatagg atcaccttct
+     3061 gctccgattt ttaccctcct gggtcacttc cgaatgaggt agcgggcgaa atataatgtc
+     3121 tccactcgta ggtgttccct gtatgtgaag ctctatagtg gacaaaggtt tgatgaacta
+     3181 gcccccgtat acgctctcac cgacggacgc gggggtctgt tatttgaagc atcatacatg
+     3241 cgaaggtgcc ttctcagcaa cgaaaggtag tgggagtgta caagttcaat gcgccgccat
+     3301 aggtctgagt atacaagggg atgcccccat ccacaacggg attggctacc cggagagctg
+     3361 gctccgctcc aacaaataat tatattaacc tattggaatt ccacctgcat atcagaggag
+     3421 agcatacggt gctctgggct cacacgtact tcctcttgtc acgcgccttt gtagagcatt
+     3481 agggcggagg tcactgggac ggggatcaga gagcttaaaa tcccaagtag cagtgcctaa
+     3541 ggtgtagaat cttgtgcaga tcttcgtctg gcccgaaacc tgggcctcca caacaatgtc
+     3601 gggtctttta taatttgaaa acatcgcgcc ttacccgcac cgcgcaggac gattagacac
+     3661 agggggtcat gtccatggtt cggggtaagc caaatttaca tcgagtgtgg gcttcattga
+     3721 ggagagggcg ttacgatacc cgttaaatga aaacccggac agtctctaac tgataggcct
+     3781 gataatcgcc aaatgaagtc gcaattagca gtacatgact ggcagatatg tcgccggaga
+     3841 cggtatgggg gacctatcct aggttggcac gcgagcgcga atgacgccta tcttatcccc
+     3901 ctgcacgtga tggtatcgtc ccaactatct tttacctcat caacgttttc ctgcataatc
+     3961 tgcaagatgg agagtccgcg agtgcgggga gtacgagatc acaaatctgc cctgaagaca
+     4021 aagctcgcag gccgtactca ggaaatagca tcgactcaca catatcggga acggcaaaga
+     4081 gtgcatcggc caatgcaaac tattgaacgt ccatgaaatt gtgtcaaact actagtgtgt
+     4141 ggacttgcgt caaggccatg gcgcaatact caaagccccg gtatttatcc cccgcagagt
+     4201 atccgtgcgg atggagttcc acagctcttt ggacatgcaa tgcgtggcgc tacatgctcc
+     4261 gctgatacag aatatctaat gtctcgcctc ttgccgtcga ccctacaact actgcacggg
+     4321 cagagtggac gcgacccctg agcggtgcag aaccttagta taaggcaagg gtggcacggc
+     4381 cgagccgcac ttgctcctac taggccgtgc tcgaagctat tgatgcaagc acagtattcc
+     4441 cgatttgtaa agcaaggtgc ccgtagccat acacccagct actcaccggc caatttcgac
+     4501 cctctctatc tcagacctcc gcatattccc aaactcctgc tcaagtatga aatgaccggc
+     4561 tcctcctaag gcctgcggac atggagtcat gcgtggaatg ccgtgtaggt agggtacaca
+     4621 cagccttacc atgtagggca ataaattata gactactgac attgattcct tgagggcccg
+     4681 ttcacttgtg ggggaaccag gaaggcgccg atagtcatca cttaaacaca tgcgacgcat
+     4741 ccatttcaag aaagacacgc tacgggtcta caccgcctat agttctaatt tgggccccgg
+     4801 tacgcacatc gatgtactct ccattacagc atagcacatc agcggcccta gttagcgctt
+     4861 ctttttgttc caacattcaa tagcggggac tgcattatcc tcaccctatt tgttgcatag
+     4921 gtatttggcc gtatacttgg gaaagagcaa ccacgggagt gcactagaaa ctgattcacc
+     4981 catgttataa cgcgttgctc gcaagtcgta ctgtggccac gcacaggtca ggcaatcgca
+     5041 accatgtctt agcagtttgt aagaagacct ttaaacatgt acctcacagc aatctcggaa
+     5101 cttttaattt tcctgagtca atgacatgct agctccgtcc acttgtaatc accgtcataa
+     5161 cacagttagc ctgcaaaagg gcgtgtacac cttgccactt taaagctgac cgaataacct
+     5221 acctacagga gatgcttagt gccacggaat gatctcgcaa tgcttagtct tacacccagt
+     5281 gaatcaaccc aagacctcgc cgactgaacg gtattgagtc caatcccgag aggcaattta
+     5341 tggccgttag tgacagtcgg tcgctgatag aataaggcag actcgtctta agcgggctgc
+     5401 tttaagagaa aatggagccc tgacgaagaa gtggatgaac caggttttga caacgtccca
+     5461 tattggtaat gtaggctcgt tatcaagaga taggtttaga aggctcaatg ctcgacgtaa
+     5521 aagaagtctt aagctctatg agccagtgat gagagctaat tatagggcgc attcgttggg
+     5581 gtaaggttgc gaattgtcat ttaactaaaa ccgacggcaa tggtttcacc ggagctgaga
+     5641 tcgcattaaa gtcacactac gaattatttg tccccgcggc tccagagaca aatttctagg
+     5701 agtgggttca tggagaaccg tgacaagcat ggtagcttca aatagcgtca tcggatctta
+     5761 aagtgattgt gacatatatg ggattgcgcg tctctcttac acaagctagt gtgcgcgagg
+     5821 tgctgaacac ctattacgtc aactcccggg atcccggcgg gttacagaga cataagcagg
+     5881 gtgtccatca ttaacttcga tgttgagccc gtgccctgat caaacacctc tcgtagtagt
+     5941 gggtgccggc cgtgtattat tttgggggag aggatgcgcc ctaagcaatt tctttccatc
+     6001 ggccagccat tcgacgccgg cacgcaagtt gttgcgggca ctgttgcagt tcccgtacta
+     6061 gagtctcaag tctagaggta ccagcatcag gaagatgggt acttcgtgtg gatcttctcc
+     6121 tgaacctgaa acctgaagag ctaaagcgcg tcgcgctgcc atacgataag tcgctctcat
+     6181 ttccggaaga cgtcgttggg tgatggcgaa caatcgcgaa acgaaaatcg cggtcggtat
+     6241 gttgattcaa gacgggctac gggcgggtta ctaacaggtg cgcagaaatg tgatgggtca
+     6301 cttgaccatg aactttcgcg ccgtcgcttc tgtggactgg ccggctccct gatagtgcac
+     6361 tagcccgttg atatgcccat taccatttgg cggcgcagtg tgccagcggg attaagatgc
+     6421 gtggcgtaca actatccgca ctttgctgac gcacaaaggc aactgatgga cagccttcgg
+     6481 gcattcgact ggttggctga gttcgcctgc ctattaatat gcttgtggaa attgatttac
+     6541 agcgcctact tctacttagg tgtacctatt tacggcacag ggataaaggc tgacagaaaa
+     6601 gtcctggaca ggtcataggt agttgtcaga cctacaatgg tataacttga gagtcctgta
+     6661 ccgcacatgc ggttgtagct agatgtccag aagaccgtag ctagcgacga gtgggttgca
+     6721 cgcgcatttt gggaaggggc tgcgcgaggg tggggtcacg ggttattcca tttctaaatg
+     6781 ctaaaccagc agttgcttta gttctgacct agcaggcatg tcatatgtat ggctagatta
+     6841 ttagtacaat gcaggactaa gaaagcctga gacttaaatg cgttggtttt tcagccgacg
+     6901 ggccgggagg gcagatggcc gaatgcgcac tgaggagtgc attgcgaggg aataggcgga
+     6961 ccaccaggtc ccctcacata ctgtggataa acctacccag ggacaactca cgccatcatt
+     7021 ttcaagagta gcactacttt ccactaagta cggtttgtcg agagccggtg gcaccgtgcg
+     7081 acgagcttgt gggcactagg cgaaccgggt tatataggac tgccttgcgg tgcgggaata
+     7141 ctttaccccg tggagaggcc ataaaagctt acatttattg tagccgctag cggtttcgac
+     7201 gcgctcaagt ggggctttat cttagagtat caaataatgc cctctcagct tcatcttgat
+     7261 ttttgtgttt ggggtagtgt atccgatggg tcaccttctt gaccttgggg agctccatcc
+     7321 atcgtaccaa tactccgttt ctttgtgttg cctaccgagt aatcgaatac cgcacgaggg
+     7381 ctagaatcta atttaaggtg ggtcttatcc ctgttgtttg gacctaacgc tgtaacaaat
+     7441 cacttccgcg acgggtgtca ttacgtcttc tatccgccac cggttcaaca gtgcgtcgaa
+     7501 tgccaagtcc ctattacccg cattgtaaag ccattacaat acctccggtg atataattga
+     7561 ttgccggttg gcaagggatc atctgtacgg gccgcgattg attgctgata aggaacggcg
+     7621 gtaaggaacg tatcgcgtac gaggttgtac actggaaccg ctaaacaagc ggtatcgcta
+     7681 aattaccggc gattatatca agggaatctt aggtagcacg aagccctacg ccctggaaac
+     7741 aggatcggcg cgaggccgtg gacatattag cctacgtttt tttacaccca gatttccgac
+     7801 gatgtccaca gctaaggcta tcctaaaccg caaacacata taaccgcagt ataaagcacg
+     7861 ggatgattcc ttggccatct tgcaagcagt gcaaggcaat tctggtgata ggggcaaggc
+     7921 agtgaaccga gtggtcagcg tattgtgacc ctgcaattgt catggcagat aattgtttat
+     7981 gaacctgttt cacacaccca tcccttggat ctccagcgta gttactaata gtacgatttc
+     8041 ctggtgttct gtcacccgcc ttgctgcctt cacgcctgcc ccacgttttg ctgtccactg
+     8101 aatatcgctc taattaatag gtgtcacact gtatcaggta agtccattcc gggtgctatt
+     8161 ggatcattcc tgagatgtac caccgatccc ataggcgtta ggtcttacat ctggagtgaa
+     8221 aaagatcagc atcgaactat aggtagataa aggtcatgac tgttaacaga gaatcgttcc
+     8281 tatcgcaacc ttcactaact ggaaggcacc cccacacttt gattagtaag cccctagcga
+     8341 atgtagtgat ccaagaacat cgagtatact ttagctctcg gttcaggcat gtatgcaatc
+     8401 gaccaccctt ccgttcagag tactctcaac cagcagattt ctaaacttta tagcctccgc
+     8461 ccactaaaat tgccttatct caggttgact cttggatgta gctgtaatct aacatacaca
+     8521 tggagctgcg gcaaattatc gtacgtccaa accaccaccg gatcagtggc gatactattc
+     8581 tcgcaaaaaa gccatccagc attggaacaa gtgttaacca gcatttttct gagtcccccg
+     8641 gaaagaaagt tgactacact acatccataa atgctagagt gtggattcgc catgtgttac
+     8701 aacggtcaac cgaaaggtta gcatgatact tcgttgttca atcggacgtt cgagcgccct
+     8761 ccctgtttat cacttgatcc cccttttgaa acatgtgcgc tgcgacgcag ggctgggaga
+     8821 gtcaccggaa accaaaagcc cgacctcgga cgtgtagggc cctccgtttg ccatcaatgg
+     8881 cgatgtagga ttctctttta atacaacgtt cactcaatta acgtcttggt ataagcgtcg
+     8941 aacgtgaccg aggttgacac cagtgtcacg gctgcgccgg ggtttgttgc tccgcgtgta
+     9001 cagggtattg gttcgatggt gcctcctcta cgtagatcta ctggataacc gtccccaata
+     9061 tccgcttccc aacgtagatt gccgacaggc ataagcttcg ggggcgcaaa ggccgacgtc
+     9121 cgcattgcag tgtagctttg tgagcaggaa gtgtgatagt ctttcgatta ttaaagtctg
+     9181 agctgaatga aaaaaggtcc aacgaatgga ggacgcgaag acatgggtgt ctcttatggc
+     9241 ccgagcggga gtaatggcgg ttcgtacata aaggctgaaa ggattctggc gttagctgtc
+     9301 ttacgttgga ttggcccttc aaattatcga tgttagctga ttcggtgtac cgggcgagga
+     9361 aagcgctctc agaacaactt catatacgag gttcgactat aatggtctaa gctcctgggc
+     9421 tagtctcaag aagcgggtac ctttagtagc acgtatcgac ggcaaagcaa agaataaaaa
+     9481 cttggctttg catcgtgcaa agatttctaa ctaggttgtt taagggctgg tatctatgtc
+     9541 ccgctataac agcgcgccta cagtagaagt ttaaccatga catacctttg aagtgttcgt
+     9601 atcacacaca aggaaggagc atgtggacac cactgagctt tgatcagcac gcgtctcaga
+     9661 gtttcagggg gacccaaatt actggtcctc aattgggacg cgaccgcatc tccccacgaa
+     9721 agcttatggg gattgcccac tgcccagctt caaatctgaa ggttcggctt attgacaggg
+     9781 tctaacacgc agctcaactg ctcgaggtta gaggcgtaat gacgggcccc gatagccttc
+     9841 tacgattacg tccagcagga accccacagc ttttccctac gtctaacacc gtgaaagcaa
+     9901 aactgtctgc ccttttacat ggtctttaag gaatctctgc acttatgtta ttaggtaagc
+     9961 tcccataaga gcaccacttc gtgtaccttg ctaactccct tcatccccac ccgcgaaaac
+    10021 ttaagacgtc acccctgtta ttatcccgtg cactcctaaa gtgcgatggg caagaacgca
+    10081 aacaattgtc tgagatttat atgggcggcg gacatagtca gagagcctta tataatctcc
+    10141 cacgtcttgc cagtccgagt tatgagaaac ccgggaccga tgacgctatt acggtcgccc
+    10201 agcgaggttc aacagagcga ggcataggag tcattacgcg tgttagcttc aacatgcgtg
+    10261 gaagtgaaac ggatctataa aacggcgtgg agtcatcagc ttgagcagat ctaacttact
+    10321 cgccacgcgc gcaaatcgtc tttcgctgtc cacgttatac gtaact
+//
Binary file test-data/init/2-step-golden_gate_plan_simulation/construct_1/construct_1.pdf has changed
--- /dev/null	Thu Jan 01 00:00:00 1970 +0000
+++ b/test-data/init/2-step-golden_gate_plan_simulation/construct_1/construct_1_summary.csv	Fri May 16 11:32:06 2025 +0000
@@ -0,0 +1,2 @@
+assembly_name,construct_id,assembly_level,construct_size,number_of_parts,depends_on,enzymes,used_in,parts
+construct_1,construct_1,1,10366,6,,BsaI,construct_3,part_A & part_B & part_C & part_D & part_E & part_F
Binary file test-data/init/2-step-golden_gate_plan_simulation/construct_1/construct_1_type2s_mix_connections_graph.pdf has changed
Binary file test-data/init/2-step-golden_gate_plan_simulation/construct_1/construct_1_type2s_mix_parts_graph.pdf has changed
--- /dev/null	Thu Jan 01 00:00:00 1970 +0000
+++ b/test-data/init/2-step-golden_gate_plan_simulation/construct_1/provided_parts_records/part_A.gb	Fri May 16 11:32:06 2025 +0000
@@ -0,0 +1,197 @@
+LOCUS       part_A                  4292 bp    DNA     circular UNK 28-OCT-2019
+DEFINITION  .
+ACCESSION   part_A
+VERSION     part_A
+KEYWORDS    "creator:SynthSys Center".
+SOURCE
+  ORGANISM  .
+            .
+FEATURES             Location/Qualifiers
+     RBS             2332..2343
+                     /label="feature"
+                     /ApEinfo_fwdcolor="#ffef86"
+     misc_feature    2208..2238
+                     /label="another feature"
+                     /ApEinfo_fwdcolor="#b4abac"
+     promoter        2289..2323
+                     /label="yet another feature"
+                     /ApEinfo_fwdcolor="#85dae9"
+     misc_feature    3162..3178
+                     /label="feature"
+                     /ApEinfo_fwdcolor="#b4abac"
+     -35_signal      228..233
+                     /label="another feature"
+                     /ApEinfo_fwdcolor="#b4abac"
+     gene            1009..2028
+                     /label="yet another feature"
+                     /ApEinfo_fwdcolor="#b4abac"
+     -35_signal      51..56
+                     /label="feature"
+                     /ApEinfo_fwdcolor="#b4abac"
+     CDS             2350..3027
+                     /label="another feature"
+                     /ApEinfo_fwdcolor="#ff00ff"
+     CDS             complement(3376..4191)
+                     /label="yet another feature"
+                     /ApEinfo_fwdcolor="#993366"
+     misc_RNA        87..639
+                     /label="feature"
+                     /ApEinfo_fwdcolor="#b4abac"
+     misc_feature    2257
+                     /label="another feature"
+                     /ApEinfo_fwdcolor="#84b0dc"
+     terminator      3119..3146
+                     /label="yet another feature"
+                     /ApEinfo_fwdcolor="#c6c9d1"
+     misc_feature    2053..2100
+                     /label="feature"
+                     /ApEinfo_fwdcolor="#c6c9d1"
+     misc_feature    2278..2281
+                     /label="another feature"
+                     /ApEinfo_fwdcolor="#ff0000"
+     misc_RNA        complement(90..197)
+                     /label="yet another feature"
+                     /ApEinfo_fwdcolor="#b4abac"
+     misc_feature    726..734
+                     /label="feature"
+                     /ApEinfo_fwdcolor="#b4abac"
+     misc_feature    2274..2277
+                     /label="another feature"
+                     /ApEinfo_fwdcolor="#faac61"
+     rep_origin      51..639
+                     /label="yet another feature"
+                     /ApEinfo_fwdcolor="#ffef86"
+     misc_feature    2161..2185
+                     /label="feature"
+                     /ApEinfo_fwdcolor="#b4abac"
+     -10_signal      206..211
+                     /label="another feature"
+                     /ApEinfo_fwdcolor="#b4abac"
+     misc_feature    complement(3292..3332)
+                     /label="yet another feature"
+                     /ApEinfo_fwdcolor="#c6c9d1"
+     rep_origin      760..1008
+                     /label="feature"
+                     /ApEinfo_fwdcolor="#ffef86"
+     terminator      3032..3103
+                     /label="another feature"
+                     /ApEinfo_fwdcolor="#c6c9d1"
+     misc_feature    3158..3161
+                     /label="yet another feature"
+                     /ApEinfo_fwdcolor="#faac61"
+     misc_feature    3173..3178
+                     /label="feature"
+                     /ApEinfo_fwdcolor="#84b0dc"
+     gene            complement(3376..4191)
+                     /label="another feature"
+                     /ApEinfo_fwdcolor="#b4abac"
+     misc_feature    2258..2262
+                     /label="yet another feature"
+                     /ApEinfo_fwdcolor="#84b0dc"
+     misc_feature    3342..3365
+                     /label="feature"
+                     /ApEinfo_fwdcolor="#b4abac"
+     misc_feature    3204..3227
+                     /label="another feature"
+                     /ApEinfo_fwdcolor="#b4abac"
+     misc_feature    2256..2273
+                     /label="yet another feature"
+                     /ApEinfo_fwdcolor="#b4abac"
+     -10_signal      72..77
+                     /label="feature"
+                     /ApEinfo_fwdcolor="#b4abac"
+     misc_feature    2029..2052
+                     /label="another feature"
+                     /ApEinfo_fwdcolor="#b4abac"
+     CDS             1009..2028
+                     /label="yet another feature"
+                     /ApEinfo_fwdcolor="#993366"
+     misc_feature    3237..3265
+                     /label="feature"
+                     /ApEinfo_fwdcolor="#b4abac"
+     misc_feature    3154..3157
+                     /label="another feature"
+                     /ApEinfo_fwdcolor="#ff0000"
+     misc_feature    3180..3290
+                     /label="yet another feature"
+                     /ApEinfo_fwdcolor="#b4abac"
+     misc_feature    2212..2236
+                     /label="feature"
+                     /ApEinfo_fwdcolor="#f8d3a9"
+     misc_feature    1..24
+                     /label="another feature"
+                     /ApEinfo_fwdcolor="#b4abac"
+ORIGIN
+        1 tcacaggatg gtccaacgaa actaggcttt agacgaggga tgaatgaccg acccccactc
+       61 gtggcactaa cggacagact tccctgacgg ttattcgacc attaaagtca gacatgcggg
+      121 ggtgaataaa ttagccaaat tgtgtcgaag aaaagacgtg cggctggcac ataaggcagt
+      181 cttgatccta gtcttgcagg gatgcacgta agtcgcctca attaactgca gccgagctcc
+      241 aggttaccaa agaccctagt atgccagggc ctaacggttg gagtatatta tgggtacgca
+      301 atagtgcgga agttaacctg ggcaacatcc aggtgagagg ttggacggaa gcgacagtaa
+      361 gtggccatag actgccgagt cgtgttaatg aatcgctata cgcccatgga gttgtggggt
+      421 cgttttatcc gagtaggggc ccgctgacta cttcgtccag acaatatgcc gtcttcaata
+      481 gtctacctga gagtcatgcc ggcatttccg acgctgagtg aaacccgcgt agccaggcga
+      541 aatttgcatc ttgaaatacc actgcagatc agccagtaag gcccatataa gggcgctggt
+      601 gttctggcga cagataaagt gttatctaat gtaacccgcg gacttttaga ggatacttga
+      661 atgcgggcat atcgtcccac cagcgtcacg tggtcgggct agcggcagac aaactctgcc
+      721 gatgtttttc tttgccgcga tagcgggcta gtcaattcac tatccggcga tgaagcatag
+      781 attgttatcg cgcttatgcg gaggataatc aagtcttggc agaacctgct cgctcatgca
+      841 ctggtgaggc gtggttatcc taacaaccgc ctaggacgaa gaatgggctc ggtagggaca
+      901 gttcgtgcgt ttagcttcgt cccatcttaa tgctgtctgg agggaggcta catgcgaaca
+      961 gaagccgtgg gcgaaagttg ttgatccggg tctaacacgg ataagggcca tggtgaacgc
+     1021 atcatgcgat acttcttggt agttcttcta acatgaccgt gccatagccc ttaccctttg
+     1081 aagaagttaa cctatctgcc gtctcctgca cgaatagcga ctggactcgg gtattttgga
+     1141 tacctcacga aagcacttcg atcggccgaa gcatggatat ttcgccggac gggcccgaat
+     1201 agagagcctt gtatgtcggt tagtacaacg cagtcctgga gacatctacg cggatgggcc
+     1261 taggggctgg acttaacatt gggtaacgta cctggtccaa agtgaatgca aagcactttt
+     1321 acaaagcgcg ggtccccgtg ggtgtttagg gtagaagatt ggcggatgct acgaacgatc
+     1381 ccgctttgaa actatcatta catcgtgtaa aagagacact taacaaaggc caataaactg
+     1441 ccagtaagaa tcgctcagtg cggtgctggg gacgctaagt aggggcaaca gccagtgaag
+     1501 gacgtgaccg acctttctca gataagatat gctggcgtct atctaataag catagtgaaa
+     1561 aaccaaccat ttcacttaca cgaagtacat ttgcattgct agtaaagacg cctaaacaga
+     1621 agtgcccttg catgctgtat gtctatagtc cttagggaag catcagccct tctacttatt
+     1681 cgaggtctga gaaaccctgg acaagctccg aattattcaa tgtgcctgtc tccgaggtta
+     1741 gatagcgcta tgctcttaag agttgcacag aatgaccatc ctggaatgtc cctggagggg
+     1801 tctaggtatg ctgatcgaag ggtgctctaa ggacttgacg tgcgtccgag gagggtgctg
+     1861 cctccttcgc ctttagatcc aacgcggatc acatgcgcgt gagctaatag gatcaccttc
+     1921 tgctccgatt tttaccctcc tgggtcactt ccgaatgagg tagcgggcga aatataatgt
+     1981 ctccactcgt aggtgttccc tgtatgtgaa gctctatagt ggacaaaggt ttgatgaact
+     2041 agcccccgta tacgctctca ccgacggacg cgggggtctg ttatttgaag catcatacat
+     2101 gcgaaggtgc cttctcagca acgaaaggta gtgggagtgt acaagttcaa tgcgccgcca
+     2161 taggtctgag tatacaaggg gatgccccca tccacaacgg gattggctac ccggagagct
+     2221 ggctccgctc caacaaataa ttatattaac ctattggaat tccacctgca tatcagagga
+     2281 gagagacctt tacggctatt ctgtttaccg gatccatcgg taccaaggat cagaaagtga
+     2341 cacggtttga acgggttgtt gtaatacttt gagtatacct ctgacgctga gcgtgtcgtc
+     2401 ctgagcgcag actcaataac atagcagtcc gacatcgccg tgatatgtaa atgcaacgaa
+     2461 tttaggtctt gactcggtct accatgtcaa aagggtagcc agatttcagc gcgaaattga
+     2521 actttgtgtt tagtgtgggg tcctcggtta caaaatagga tcagacatgt gtgattttgg
+     2581 taacctagtc tggcagtccg acagacttcg ctatgatttg atggggccgg cctataattg
+     2641 gcttgcgcaa cccgctcatc tcgggcgtgt tttacttcct gcggtcccca cgccctattt
+     2701 tcgggccagc tgtaggtgct agagtgaatg ctggcgaata agattccccg ctatttggcg
+     2761 cctcgccaca gctctggcac tatgggggga gtttctctgt tccttaaaca gcacccgttt
+     2821 ttgaggtgta ttggtttcgg ttctgcatta ggcaattcgt accgtacaat caattacgac
+     2881 acattggcgg cagttatcag ctacccatcg caaagcacac acccacatgt atctattttt
+     2941 cgcaaattcc aaaagcttcg attgagattg catcggtagt ccctcagaca tgtcgtaatc
+     3001 gaatgcctct tgttccatga gagagagaag tatggcgcga accgctctgc ctttaatttg
+     3061 gttctaccat ccacgagttt aaggggcata accctgccca gcactttccg aggctcacgt
+     3121 tcatgctacg gtagcacctt tctgcgggtc tcacgctgtc aatatgcagg tgctgcagga
+     3181 atttgtctcc aatcgacttg agatatcgca agcatgaaat tatattagac acgccagaga
+     3241 acttgggaag cagcactggt agtgatagca acccgagtac agtaacgagt gagcttctga
+     3301 tcatgagctc tcctacggcg tcaatgcgac gaatgcccag catgcactct cgctatccat
+     3361 gcctgctagg gtggcattat gctcaggaac agttgtagct tggatatcgt ctagatgaaa
+     3421 tacctggaca ctggttagcg tcgtcaagca ccaaggacat tcacacgctc gcggtctttc
+     3481 gtctccctaa gcgttcggca gtcgggcgtg aagaggttgt aatcagacgg aacaaagcct
+     3541 gaaaaaattc cagcgacgta gtattcatga tcctgtacca tctgtagccg ccgcggcgca
+     3601 cgattgaatg taggctacta accccatccg tgttagcgat gtgagtttct accgcaacga
+     3661 atgctcaagc gaaccttctt ctttcgtccg caacccacaa gccgtggtta tgacagctaa
+     3721 attgtcccag acatcccttt attacacaag agctccagcg gaatacctag tcacagcggt
+     3781 aatgacacaa agctcttagt tagtccaggg actacttctg tctacagcac atcacactca
+     3841 ttatcagcat cagtgtagag acggagaaca tgggctatcc tataccaaga tccgccatct
+     3901 aaacatttga agtttcccgt cttctataac ttagcactcg acgctattct gctgagtgcg
+     3961 cttagtctgt agcgacttgc gaaatccata aactgagaat tgaaagagag tgcataaccg
+     4021 aaacctttgt ggcatatttc cgttgaaacg taccagaaca gccgtttagt gcggaacata
+     4081 cagtatcctg ataaagcact caacccaaca gacaccctat gccgatagcg ggatgctaac
+     4141 aagtatagtc atgatgattt ctcggacagc ggggtttggt acagctgcaa tccgtgattt
+     4201 aaattcggac ctctgcacac accgacggtt acccatatcc tctacggctg taggaagttt
+     4261 taccttggat gtcattctga tttcggcgta tc
+//
--- /dev/null	Thu Jan 01 00:00:00 1970 +0000
+++ b/test-data/init/2-step-golden_gate_plan_simulation/construct_1/provided_parts_records/part_B.gb	Fri May 16 11:32:06 2025 +0000
@@ -0,0 +1,124 @@
+LOCUS       part_B                  4259 bp    DNA     circular UNK 29-OCT-2019
+DEFINITION  .
+ACCESSION   part_B
+VERSION     part_B
+KEYWORDS    "Source" "Sequence" "Freezer" "Shelf" "Box" "Concentration" "Use".
+SOURCE
+  ORGANISM  .
+            .
+FEATURES             Location/Qualifiers
+     primer_bind     531..550
+                     /label="feature"
+                     /ApEinfo_fwdcolor="#faac61"
+     terminator      3078..3135
+                     /label="another feature"
+                     /ApEinfo_fwdcolor="#c6c9d1"
+     CDS             complement(join(4216..4259,1..616))
+                     /label="yet another feature"
+                     /ApEinfo_fwdcolor="#f58a5e"
+     exon            2863..3060
+                     /label="feature"
+                     /ApEinfo_fwdcolor="#75c6a9"
+     gene            2863..3060
+                     /label="another feature"
+                     /ApEinfo_fwdcolor="#faac61"
+     terminator      4101..4195
+                     /label="yet another feature"
+                     /ApEinfo_fwdcolor="#9eafd2"
+     primer_bind     complement(3410..3429)
+                     /label="feature"
+                     /ApEinfo_fwdcolor="#faac61"
+     primer_bind     778..796
+                     /label="another feature"
+                     /ApEinfo_fwdcolor="#75c6a9"
+     misc_feature    859..862
+                     /label="yet another feature"
+                     /ApEinfo_fwdcolor="#ffef86"
+     primer_bind     complement(3159..3176)
+                     /label="feature"
+                     /ApEinfo_fwdcolor="#faac61"
+     misc_feature    863..3060
+                     /label="another feature"
+                     /ApEinfo_fwdcolor="#f58a5e"
+     rep_origin      complement(3330..3918)
+                     /label="yet another feature"
+                     /ApEinfo_fwdcolor="#84b0dc"
+     misc_feature    3061..3064
+                     /label="feature"
+                     /ApEinfo_fwdcolor="#ffef86"
+     terminator      800..843
+                     /label="another feature"
+                     /ApEinfo_fwdcolor="#85dae9"
+ORIGIN
+        1 cgggtctagc cacgcggctg aaaatgcgcc tcaccaagtt cagagagttg taatttaaag
+       61 gaccaaagaa cgtccattat gaagacacca atgagaaaag ttcattgcga tcgcagctta
+      121 gactgacgtg aagttccaac atttggcata cgtacttgtt aagttcctcc ggctatatgc
+      181 gctaggcgca ggtatattag ccggacatct gcaaggttga cgctgaagcc ttatcggtaa
+      241 tgcaagcaca acggtattgc agacacacaa taggaagtta tgttaacagg agagggtgat
+      301 gccgatgatt acgccccgcg tcgacagtac aataaaacag ctagatcatg tcgaaagtgt
+      361 aggcaaaaca ggtaggtgca ggacaggagg gttccctcaa gtcggcttgc tttatgtggc
+      421 gaatctgata cccataccgg ctatacatcg gccagggaat atcacagatt ttaaatgagc
+      481 ggagatagac ctatgggacc gcatcgatgc aagacatcgc ctacagatac ataatctgga
+      541 agacgcagat atcagtacgc tccttcctgg gaggcgtggt ccttggcacc agtcggccac
+      601 cccttagcgt ttcacctaag caacgaatcc aggactcctc ttttagcgtt tgggtgtcag
+      661 gcgcatcagg agtggttaaa tgaacgctgt acttcgcaag ataattgtga agatctctgc
+      721 tattccttaa cattaccacc aactttgcct acatatggcg taatcaaaaa tgcagcgggg
+      781 tgctcgatcg tgaaccctca atcacgatgt gctatggcgt agccacacaa catagttccg
+      841 gtctggaatt cggtctctgg agagcatacg gtgctctggg ctcacacgta cttcctcttg
+      901 tcacgcgcct ttgtagagca ttagggcgga ggtcactggg acggggatca gagagcttaa
+      961 aatcccaagt agcagtgcct aaggtgtaga atcttgtgca gatcttcgtc tggcccgaaa
+     1021 cctgggcctc cacaacaatg tcgggtcttt tataatttga aaacatcgcg ccttacccgc
+     1081 accgcgcagg acgattagac acagggggtc atgtccatgg ttcggggtaa gccaaattta
+     1141 catcgagtgt gggcttcatt gaggagaggg cgttacgata cccgttaaat gaaaacccgg
+     1201 acagtctcta actgataggc ctgataatcg ccaaatgaag tcgcaattag cagtacatga
+     1261 ctggcagata tgtcgccgga gacggtatgg gggacctatc ctaggttggc acgcgagcgc
+     1321 gaatgacgcc tatcttatcc ccctgcacgt gatggtatcg tcccaactat cttttacctc
+     1381 atcaacgttt tcctgcataa tctgcaagat ggagagtccg cgagtgcggg gagtacgaga
+     1441 tcacaaatct gccctgaaga caaagctcgc aggccgtact caggaaatag catcgactca
+     1501 cacatatcgg gaacggcaaa gagtgcatcg gccaatgcaa actattgaac gtccatgaaa
+     1561 ttgtgtcaaa ctactagtgt gtggacttgc gtcaaggcca tggcgcaata ctcaaagccc
+     1621 cggtatttat cccccgcaga gtatccgtgc ggatggagtt ccacagctct ttggacatgc
+     1681 aatgcgtggc gctacatgct ccgctgatac agaatatcta atgtctcgcc tcttgccgtc
+     1741 gaccctacaa ctactgcacg ggcagagtgg acgcgacccc tgagcggtgc agaaccttag
+     1801 tataaggcaa gggtggcacg gccgagccgc acttgctcct actaggccgt gctcgaagct
+     1861 attgatgcaa gcacagtatt cccgatttgt aaagcaaggt gcccgtagcc atacacccag
+     1921 ctactcaccg gccaatttcg accctctcta tctcagacct ccgcatattc ccaaactcct
+     1981 gctcaagtat gaaatgaccg gctcctccta aggcctgcgg acatggagtc atgcgtggaa
+     2041 tgccgtgtag gtagggtaca cacagcctta ccatgtaggg caataaatta tagactactg
+     2101 acattgattc cttgagggcc cgttcacttg tgggggaacc aggaaggcgc cgatagtcat
+     2161 cacttaaaca catgcgacgc atccatttca agaaagacac gctacgggtc tacaccgcct
+     2221 atagttctaa tttgggcccc ggtacgcaca tcgatgtact ctccattaca gcatagcaca
+     2281 tcagcggccc tagttagcgc ttctttttgt tccaacattc aatagcgggg actgcattat
+     2341 cctcacccta tttgttgcat aggtatttgg ccgtatactt gggaaagagc aaccacggga
+     2401 gtgcactaga aactgattca cccatgttat aacgcgttgc tcgcaagtcg tactgtggcc
+     2461 acgcacaggt caggcaatcg caaccatgtc ttagcagttt gtaagaagac ctttaaacat
+     2521 gtacctcaca gcaatctcgg aacttttaat tttcctgagt caatgacatg ctagctccgt
+     2581 ccacttgtaa tcaccgtcat aacacagtta gcctgcaaaa gggcgtgtac accttgccac
+     2641 tttaaagctg accgaataac ctacctacag gagatgctta gtgccacgga atgatctcgc
+     2701 aatgcttagt cttacaccca gtgaatcaac ccaagacctc gccgactgaa cggtattgag
+     2761 tccaatcccg agaggcaatt tatggccgtt agtgacagtc ggtcgctgat agaataaggc
+     2821 agactcgtct taagcgggct gctttaagag aaaatggagc cctgacgaag aagtggatga
+     2881 accaggtttt gacaacgtcc catattggta atgtaggctc gttatcaaga gataggttta
+     2941 gaaggctcaa tgctcgacgt aaaagaagtc ttaagctcta tgagccagtg atgagagcta
+     3001 attatagggc gcattcgttg gggtaaggtt gcgaattgtc atttaactaa aaccgacggc
+     3061 aatgtgagac cctgcagtcc gcctacacct ggctcactga ggcggcaacc gttatcgaag
+     3121 cagcatgtat tggtagtacc tgtcgccgat ttccttggga gtgcgctgtt gcgataacgc
+     3181 ttatttatgg tttgcgcggg atgtatctaa tgcggccgcc gcccgatcag cctgaacact
+     3241 gcggtcatga gccggtccat catgcagttc gcctgtaatt ataacctatt tgttaatggg
+     3301 gcttacagag gagcttccaa cgcatctacg agtaacggct gggatcacaa cttagccacc
+     3361 ttgtagcagg gacataccgc tttgcgacta ctgcgattct ctaacgagtc ttctgattgg
+     3421 tcctatgctc tttcaaaatc tcgataccgt agccaaccct gctgcccacc ttaaactatg
+     3481 acaggacaca ccattgtgcc aacctacacc ttaccagtag ttctgctctc caccactaat
+     3541 acgatgtcag aggccagaag gagcaccgtc aacaaacgcg ataatcaggg cggcgaagat
+     3601 ggaagtagct tgggttgtcg gtgggcaggt caggcgttag tgttatttga ataccaactg
+     3661 ttagaccaca gcgactcgaa cagtccgcaa gtcaagtgcg gtcggctttt acaggtggcg
+     3721 gattttcatt ccaccattcg ggtctaggtg tggtactaac cgcggtcata cgtggagttg
+     3781 aaccgcctga cgcactaagc tatgcgggca acaatatcgc caaagtcatt gtgttgggtt
+     3841 ttcacaacag tcacttcgct cacggccgaa ttaaatatct ctaactatta agccattttc
+     3901 caaccatcgg ctatcccagc ggttcaatcc gaatcgttac cagtgggtag ctgcagagga
+     3961 tcctaagggc gggtcccgct tactgtaact cgtcatgtct cgtggtctac caattcggtt
+     4021 agtattcgtg ccatgtatct cataagggtt gcagtttcgt cattgtcgta gttccttaat
+     4081 ggactggtac gacccggttg ttatacaacc atcaatcgtt aacggacatt agtgagccga
+     4141 ggagaagacc catcagcgga taacccgcca ttatcaccga tactgacata tgagtgccat
+     4201 actgggactg gcttcacgtg agggacctca aagtgagtcg tacaaggcag ctcctcaaa
+//
--- /dev/null	Thu Jan 01 00:00:00 1970 +0000
+++ b/test-data/init/2-step-golden_gate_plan_simulation/construct_1/provided_parts_records/part_C.gb	Fri May 16 11:32:06 2025 +0000
@@ -0,0 +1,99 @@
+LOCUS       part_C                  3423 bp    DNA     linear   UNK 20-NOV-2019
+DEFINITION  .
+ACCESSION   part_C
+VERSION     part_C
+KEYWORDS    .
+SOURCE
+  ORGANISM  .
+            .
+FEATURES             Location/Qualifiers
+     CDS             18..3275
+                     /label="feature"
+                     /ApEinfo_fwdcolor="#ffef86"
+     CDS             3276..3404
+                     /label="another feature"
+                     /ApEinfo_fwdcolor="#ffef86"
+     misc_feature    2486
+                     /label="yet another feature"
+                     /ApEinfo_fwdcolor="#b1ff67"
+     misc_feature    3411..3423
+                     /label="feature"
+                     /ApEinfo_fwdcolor="#faac61"
+     misc_feature    3407..3410
+                     /label="another feature"
+                     /ApEinfo_fwdcolor="#f8d3a9"
+     misc_feature    14..17
+                     /label="yet another feature"
+                     /ApEinfo_fwdcolor="#f8d3a9"
+     misc_feature    1..13
+                     /label="feature"
+                     /ApEinfo_fwdcolor="#faac61"
+     misc_feature    3131
+                     /label="another feature"
+                     /ApEinfo_fwdcolor="#b1ff67"
+     misc_feature    2078
+                     /label="yet another feature"
+                     /ApEinfo_fwdcolor="#b1ff67"
+     misc_feature    14
+                     /label="feature"
+                     /ApEinfo_fwdcolor="#b1ff67"
+ORIGIN
+        1 tggctaggtc tccaatggtt tcaccggagc tgagatcgca ttaaagtcac actacgaatt
+       61 atttgtcccc gcggctccag agacaaattt ctaggagtgg gttcatggag aaccgtgaca
+      121 agcatggtag cttcaaatag cgtcatcgga tcttaaagtg attgtgacat atatgggatt
+      181 gcgcgtctct cttacacaag ctagtgtgcg cgaggtgctg aacacctatt acgtcaactc
+      241 ccgggatccc ggcgggttac agagacataa gcagggtgtc catcattaac ttcgatgttg
+      301 agcccgtgcc ctgatcaaac acctctcgta gtagtgggtg ccggccgtgt attattttgg
+      361 gggagaggat gcgccctaag caatttcttt ccatcggcca gccattcgac gccggcacgc
+      421 aagttgttgc gggcactgtt gcagttcccg tactagagtc tcaagtctag aggtaccagc
+      481 atcaggaaga tgggtacttc gtgtggatct tctcctgaac ctgaaacctg aagagctaaa
+      541 gcgcgtcgcg ctgccatacg ataagtcgct ctcatttccg gaagacgtcg ttgggtgatg
+      601 gcgaacaatc gcgaaacgaa aatcgcggtc ggtatgttga ttcaagacgg gctacgggcg
+      661 ggttactaac aggtgcgcag aaatgtgatg ggtcacttga ccatgaactt tcgcgccgtc
+      721 gcttctgtgg actggccggc tccctgatag tgcactagcc cgttgatatg cccattacca
+      781 tttggcggcg cagtgtgcca gcgggattaa gatgcgtggc gtacaactat ccgcactttg
+      841 ctgacgcaca aaggcaactg atggacagcc ttcgggcatt cgactggttg gctgagttcg
+      901 cctgcctatt aatatgcttg tggaaattga tttacagcgc ctacttctac ttaggtgtac
+      961 ctatttacgg cacagggata aaggctgaca gaaaagtcct ggacaggtca taggtagttg
+     1021 tcagacctac aatggtataa cttgagagtc ctgtaccgca catgcggttg tagctagatg
+     1081 tccagaagac cgtagctagc gacgagtggg ttgcacgcgc attttgggaa ggggctgcgc
+     1141 gagggtgggg tcacgggtta ttccatttct aaatgctaaa ccagcagttg ctttagttct
+     1201 gacctagcag gcatgtcata tgtatggcta gattattagt acaatgcagg actaagaaag
+     1261 cctgagactt aaatgcgttg gtttttcagc cgacgggccg ggagggcaga tggccgaatg
+     1321 cgcactgagg agtgcattgc gagggaatag gcggaccacc aggtcccctc acatactgtg
+     1381 gataaaccta cccagggaca actcacgcca tcattttcaa gagtagcact actttccact
+     1441 aagtacggtt tgtcgagagc cggtggcacc gtgcgacgag cttgtgggca ctaggcgaac
+     1501 cgggttatat aggactgcct tgcggtgcgg gaatacttta ccccgtggag aggccataaa
+     1561 agcttacatt tattgtagcc gctagcggtt tcgacgcgct caagtggggc tttatcttag
+     1621 agtatcaaat aatgccctct cagcttcatc ttgatttttg tgtttggggt agtgtatccg
+     1681 atgggtcacc ttcttgacct tggggagctc catccatcgt accaatactc cgtttctttg
+     1741 tgttgcctac cgagtaatcg aataccgcac gagggctaga atctaattta aggtgggtct
+     1801 tatccctgtt gtttggacct aacgctgtaa caaatcactt ccgcgacggg tgtcattacg
+     1861 tcttctatcc gccaccggtt caacagtgcg tcgaatgcca agtccctatt acccgcattg
+     1921 taaagccatt acaatacctc cggtgatata attgattgcc ggttggcaag ggatcatctg
+     1981 tacgggccgc gattgattgc tgataaggaa cggcggtaag gaacgtatcg cgtacgaggt
+     2041 tgtacactgg aaccgctaaa caagcggtat cgctaaatta ccggcgatta tatcaaggga
+     2101 atcttaggta gcacgaagcc ctacgccctg gaaacaggat cggcgcgagg ccgtggacat
+     2161 attagcctac gtttttttac acccagattt ccgacgatgt ccacagctaa ggctatccta
+     2221 aaccgcaaac acatataacc gcagtataaa gcacgggatg attccttggc catcttgcaa
+     2281 gcagtgcaag gcaattctgg tgataggggc aaggcagtga accgagtggt cagcgtattg
+     2341 tgaccctgca attgtcatgg cagataattg tttatgaacc tgtttcacac acccatccct
+     2401 tggatctcca gcgtagttac taatagtacg atttcctggt gttctgtcac ccgccttgct
+     2461 gccttcacgc ctgccccacg ttttgctgtc cactgaatat cgctctaatt aataggtgtc
+     2521 acactgtatc aggtaagtcc attccgggtg ctattggatc attcctgaga tgtaccaccg
+     2581 atcccatagg cgttaggtct tacatctgga gtgaaaaaga tcagcatcga actataggta
+     2641 gataaaggtc atgactgtta acagagaatc gttcctatcg caaccttcac taactggaag
+     2701 gcacccccac actttgatta gtaagcccct agcgaatgta gtgatccaag aacatcgagt
+     2761 atactttagc tctcggttca ggcatgtatg caatcgacca cccttccgtt cagagtactc
+     2821 tcaaccagca gatttctaaa ctttatagcc tccgcccact aaaattgcct tatctcaggt
+     2881 tgactcttgg atgtagctgt aatctaacat acacatggag ctgcggcaaa ttatcgtacg
+     2941 tccaaaccac caccggatca gtggcgatac tattctcgca aaaaagccat ccagcattgg
+     3001 aacaagtgtt aaccagcatt tttctgagtc ccccggaaag aaagttgact acactacatc
+     3061 cataaatgct agagtgtgga ttcgccatgt gttacaacgg tcaaccgaaa ggttagcatg
+     3121 atacttcgtt gttcaatcgg acgttcgagc gccctccctg tttatcactt gatccccctt
+     3181 ttgaaacatg tgcgctgcga cgcagggctg ggagagtcac cggaaaccaa aagcccgacc
+     3241 tcggacgtgt agggccctcc gtttgccatc aatggcgatg taggattctc ttttaataca
+     3301 acgttcactc aattaacgtc ttggtataag cgtcgaacgt gaccgaggtt gacaccagtg
+     3361 tcacggctgc gccggggttt gttgctccgc gtgtacaggg tattggttcg tgagacctag
+     3421 cca
+//
--- /dev/null	Thu Jan 01 00:00:00 1970 +0000
+++ b/test-data/init/2-step-golden_gate_plan_simulation/construct_1/provided_parts_records/part_D.gb	Fri May 16 11:32:06 2025 +0000
@@ -0,0 +1,96 @@
+LOCUS       part_D                  2682 bp    DNA     circular UNK 30-OCT-2019
+DEFINITION  .
+ACCESSION   part_D
+VERSION     part_D
+KEYWORDS    "Source:Subcloned from vector Andrew" "Sequence" "Freezer" "Shelf"
+            "Box:Mobius box" "Concentration" "Use:Mobius".
+SOURCE
+  ORGANISM  .
+            .
+FEATURES             Location/Qualifiers
+     rep_origin      complement(262..850)
+                     /label="feature"
+                     /ApEinfo_fwdcolor="#ffef86"
+     misc_feature    2642..2671
+                     /label="another feature"
+                     /ApEinfo_fwdcolor="#b1ff67"
+     terminator      1991..2034
+                     /label="yet another feature"
+                     /ApEinfo_fwdcolor="#c6c9d1"
+     CDS             2054..2566
+                     /label="feature"
+                     /ApEinfo_fwdcolor="#84b0dc"
+     misc_feature    1919..1938
+                     /label="another feature"
+                     /ApEinfo_fwdcolor="#f58a5e"
+     misc_feature    2050..2053
+                     /label="yet another feature"
+                     /ApEinfo_fwdcolor="#f8d3a9"
+     misc_feature    2576..2641
+                     /label="feature"
+                     /ApEinfo_fwdcolor="#b7e6d7"
+     terminator      10..67
+                     /label="another feature"
+                     /ApEinfo_fwdcolor="#c6c9d1"
+     misc_feature    143..162
+                     /label="yet another feature"
+                     /ApEinfo_fwdcolor="#75c6a9"
+     misc_feature    2675..2678
+                     /label="feature"
+                     /ApEinfo_fwdcolor="#f8d3a9"
+     CDS             2618..2641
+                     /label="another feature"
+                     /ApEinfo_fwdcolor="#84b0dc"
+     CDS             complement(1148..1807)
+                     /label="yet another feature"
+                     /ApEinfo_fwdcolor="#b7e6d7"
+     terminator      1033..1127
+                     /label="feature"
+                     /ApEinfo_fwdcolor="#c6c9d1"
+ORIGIN
+        1 accctgcagt ccgtgaatta agaccaatcc actggagctc tatacaggac atcagcgatc
+       61 ggtcgagtaa aaccgagttt ctggactccc ttagtctgag aattgtacct tattacgaat
+      121 ccggaaatga agtgcgctca taaaatcttg atcgctaact gttttccgct ttttgaacct
+      181 acagtcagct atttcgccgc aagcgaggtt tatccccttt tgtgtgtgtc agcgggcgaa
+      241 cgtggaggac aattatgacg aatgcctaat aaccaacgta ggcttggctg gtgaggacat
+      301 tgcccttccc cttctactaa ccagtgttgt tcagatcatg taccaagtgc agtaatgcta
+      361 atcccctgaa ttctgacgtt ggatttggag cgtgattggc aattatccgc tgcaaggcgt
+      421 agtatcgcta tctgggaaaa cttagggttg caagcaaggt catcgcccgt ctctagatcc
+      481 gacgggagcc tcaccctgca tgaggaagtc ctaatccgct ctaaacaaga gctgaacact
+      541 ggatgtctcg cagtagattt gctagaatgc aatgctggct cgtgtgcagc ctcaaggtca
+      601 ccatgcttcc gttaaattcc acgctctccg agtctgctgg ttcgggataa atctacgtga
+      661 cattcgcgag gtcccggcct gtagatcgtc tcggcaggag agaacacggt tgatccccca
+      721 cgcggaaccg atagatgcca ggctagatga tgactgaagg tagtttgtac gagtgacctc
+      781 tctagccaag tattttcccg tctcttaagt tatagccgct ctcattccgg gttgtgatat
+      841 ccttcatatc cactctctgt aaaatgctgg gttgttcttc tctccacggt cagggaatcg
+      901 cctcttttcg gataaacgac attatttcgc gccacagaac ggtttggggg tcgaaggacc
+      961 ctagactttg ggtatcccac tcttaccgga tggtaccgct atctccccag ggtccatcgg
+     1021 aatggctagc cacgttaccc ttatctgtca gtatcagtct cagacttaag tataccacgg
+     1081 tagcgacagc tgtcttttaa tggcccgggc agggagccgg gcccaccgtc catggtccac
+     1141 tgtaagggta tctgcaacct tcgccgagct tcttccccaa ggaggtagta ccttaccaaa
+     1201 cttccgagtc agtatcgtca aaggggcccc tagggctcac accatcgagt ttccgcggct
+     1261 taccagtcta gcctgatatg tttcaggtca ggaaataaga ggtatagccc cgtggacacg
+     1321 tactgttcga gcggctagat gtaggttgag ttaagtacag tagacgcgtt ggataccgtc
+     1381 gaacattact ccgtctgcca agggtagccg agtacttctt ccggctcggc cattccgact
+     1441 aagttagttt cgaattgacg tgccaaagcg tggctcccag tcatttgtcc ttaaattaaa
+     1501 cataagtttt ttacctgctc gcgtgccggc cgcttgaggg ggcagcaaga agtcggttca
+     1561 aatggggtgt taagaccggt gttgcaagcg gaccatccag agttagcgtc ctcgacgaaa
+     1621 cgttaacaat cgtgagatta gaggtcgaat atccccttcg tagggggttt tattgtgcaa
+     1681 gatgcgcaaa tgaaccccaa ccttgcgggc ctgtagcgaa caggcgaaaa ggtccaatac
+     1741 ggcgcccgat gcaccgtaaa acaggtcctc taactgtgtg ttctacgctc tccggatcct
+     1801 gtatataaga acgaatcccc ttttcctagg gcccggccgc gtagacccag tacacttgac
+     1861 tttcacgaag atccatccta ctcccatacg cttgagagtg ccaacgtagt ttgtaaccga
+     1921 ccttgcctcg gctagaaagg cattttgtcg catgtggcca gcctgtcagg gcgtgctcta
+     1981 ggcttgacga ttagtgctac gggatgattc gtaaccgagc tgacgggacg cctctggaat
+     2041 tcggtctctt tcgatggtgc ctcctctacg tagatctact ggataaccgt ccccaatatc
+     2101 cgcttcccaa cgtagattgc cgacaggcat aagcttcggg ggcgcaaagg ccgacgtccg
+     2161 cattgcagtg tagctttgtg agcaggaagt gtgatagtct ttcgattatt aaagtctgag
+     2221 ctgaatgaaa aaaggtccaa cgaatggagg acgcgaagac atgggtgtct cttatggccc
+     2281 gagcgggagt aatggcggtt cgtacataaa ggctgaaagg attctggcgt tagctgtctt
+     2341 acgttggatt ggcccttcaa attatcgatg ttagctgatt cggtgtaccg ggcgaggaaa
+     2401 gcgctctcag aacaacttca tatacgaggt tcgactataa tggtctaagc tcctgggcta
+     2461 gtctcaagaa gcgggtacct ttagtagcac gtatcgacgg caaagcaaag aataaaaact
+     2521 tggctttgca tcgtgcaaag atttctaact aggttgttta agggctggta tctatgtccc
+     2581 gctataacag cgcgcctaca gtagaagttt aaccatgaca tacctttgaa gtgttcgtat
+     2641 cacacacaag gaaggagcat gtggacacca ctgagctttg ag
+//
--- /dev/null	Thu Jan 01 00:00:00 1970 +0000
+++ b/test-data/init/2-step-golden_gate_plan_simulation/construct_1/provided_parts_records/part_E.gb	Fri May 16 11:32:06 2025 +0000
@@ -0,0 +1,38 @@
+LOCUS       part_E                   347 bp    DNA     linear   UNK 20-OCT-2019
+DEFINITION  .
+ACCESSION   part_E
+VERSION     part_E
+KEYWORDS    .
+SOURCE
+  ORGANISM  .
+            .
+FEATURES             Location/Qualifiers
+     3'UTR           21..330
+                     /label="feature"
+                     /ApEinfo_fwdcolor="#c6c9d1"
+     misc_feature    1..13
+                     /label="another feature"
+                     /ApEinfo_fwdcolor="#faac61"
+     misc_feature    18..20
+                     /label="yet another feature"
+                     /ApEinfo_fwdcolor="#b1ff67"
+     misc_feature    14..17
+                     /label="feature"
+                     /ApEinfo_fwdcolor="#b4abac"
+     misc_feature    331..334
+                     /label="another feature"
+                     /ApEinfo_fwdcolor="#f8d3a9"
+     misc_feature    14..17
+                     /label="yet another feature"
+                     /ApEinfo_fwdcolor="#f8d3a9"
+     misc_feature    335..347
+                     /label="feature"
+                     /ApEinfo_fwdcolor="#faac61"
+ORIGIN
+        1 tggctaggtc tccgctttga tcagcacgcg tctcagagtt tcagggggac ccaaattact
+       61 ggtcctcaat tgggacgcga ccgcatctcc ccacgaaagc ttatggggat tgcccactgc
+      121 ccagcttcaa atctgaaggt tcggcttatt gacagggtct aacacgcagc tcaactgctc
+      181 gaggttagag gcgtaatgac gggccccgat agccttctac gattacgtcc agcaggaacc
+      241 ccacagcttt tccctacgtc taacaccgtg aaagcaaaac tgtctgccct tttacatggt
+      301 ctttaaggaa tctctgcact tatgttatta ggtatgagac ctagcca
+//
--- /dev/null	Thu Jan 01 00:00:00 1970 +0000
+++ b/test-data/init/2-step-golden_gate_plan_simulation/construct_1/provided_parts_records/part_F.gb	Fri May 16 11:32:06 2025 +0000
@@ -0,0 +1,74 @@
+LOCUS       part_F                  2470 bp    DNA     circular UNK 20-OCT-2019
+DEFINITION  .
+ACCESSION   part_F
+VERSION     part_F
+KEYWORDS    .
+SOURCE
+  ORGANISM  .
+            .
+FEATURES             Location/Qualifiers
+     terminator      1991..2034
+                     /label="feature"
+                     /ApEinfo_fwdcolor="#c6c9d1"
+     terminator      10..67
+                     /label="another feature"
+                     /ApEinfo_fwdcolor="#c6c9d1"
+     rep_origin      complement(262..850)
+                     /label="yet another feature"
+                     /ApEinfo_fwdcolor="#ffef86"
+     CDS             complement(1148..1807)
+                     /label="feature"
+                     /ApEinfo_fwdcolor="#b7e6d7"
+     misc_feature    2054..2462
+                     /label="another feature"
+                     /ApEinfo_fwdcolor="#faac61"
+     primer_bind     complement(2351..2371)
+                     /label="yet another feature"
+                     /ApEinfo_fwdcolor="#85dae9"
+     terminator      1033..1127
+                     /label="feature"
+                     /ApEinfo_fwdcolor="#c6c9d1"
+ORIGIN
+        1 accctgcagt ccgctcacgg accgcaagga cgggctaatt aggaggcaac gccgatgggg
+       61 ccgcagttca gcgctgcaat gtttgctgaa cagggatgtc acgcatactc gtctacaccg
+      121 cccgtgaccc gttatcacgg ttgaagtgtc gaggactagt gctgccgctg cgtgagggac
+      181 acaagctgct atttgtccat acgccatgtg ctccgagctc atgctgccat gagacaatga
+      241 gacatgtcgc caataatcga gtgacgagtc agaatgacct ggctccgcat aaccgttcaa
+      301 agttattgac aacgcatctt tcgtagttcg tgcagcagcg gtctttcttc tatagccgac
+      361 tagatgttaa gggactcctg gataccgcta gttttaccct ctccaggaag ccagcgaggg
+      421 cgtgccgcaa gtcccaatag ataccgggca tgatcaaggg gccctgtgct ctgagtctgg
+      481 aggcgacagt gcgctgcagc tcagaggtgg ttattgcgaa ccggcaccgc tggacagcac
+      541 ccacggggac acgtaagtaa tttagggtct gggccaacgg ctcagcgcca gtaggattaa
+      601 caaactcgac taatcaatgt gccagctact tccgccgggt ctgacggggc ggcacccatt
+      661 accatgtgta ctgaataggg attccgagcg accgtaaagg cgttcctaag tgtcatatac
+      721 tggcaactag aggcactcac atcggggtta agggcccacc gtaatggcca cgcaggatac
+      781 caattggccg ggtgaggatc tattcacgcc gatggggagt tctaagcccg agttattggt
+      841 gctagtggct tggacctgtg tgtcgatgat gcgcgatata gaggcgcggg actagctggg
+      901 gtccacaggt gctatgttgg gtgcgctcta tggacgtccg gaaagagact aatgcaacgg
+      961 tatggcatca agcgcgaccg atggggagac tggaaattgt gaaatagtgt actggcgcga
+     1021 tcattaaata ttgcatacgc tgtccgttat gacctagagg ggattatttg aacgagaggt
+     1081 cttgggaact gcattggaga tggtcagatg gaatgcgaaa tgtatcacca cgggcggccg
+     1141 aaggggagac agactatccc tagttggctt cggtaaccgt aatcagatgg aacggcgggt
+     1201 aatgctgata ccgagcgctc gtacggcgcg tggtgatgac acggtctgat gtcgtagcaa
+     1261 acgagccggt cctcgtacaa caggctcaca tctcaatcac gcataccaac cgattacata
+     1321 acgcgatcta tatttgggga actctactta ctaccctgtc tgcagagtgc gttctatgat
+     1381 cctcccctac gtgacggcca acgattagtc ggcctaggtc taacggataa aaggactccc
+     1441 cagtacatgt gaccatatga gccaggccgt cgagcgcgac cactccccag cctatagtga
+     1501 ggaggagcgg tattcggtta aagtttagct agcgactttt ttgtcaccga agtagggacg
+     1561 ggcatattgt ttacccttaa agcggggatc aatccattgg ggtcggcagt cataaaagga
+     1621 tctaagcccc caaagcgcat ggtaaggtac tcccgggttt cccgaaatct aggcaagtct
+     1681 cggtgggtgt cagcctgacg agtagggcac gttaccgagg ccacggtgct tgatgactac
+     1741 gggtgaatcg aaccgatcaa acgcacagca tctaaaccct ggtgtactgg tccacagggg
+     1801 gacaagtctt tgaagtgtcg cttcagatga cggccgcggg ccaatctgaa ttgttagaca
+     1861 ccgacagtag ggtgtgcaac tcgctcgggc aagagtgtaa aggcacatcc tccccgaggt
+     1921 aagttatacc gctctaacgg cgcgggcagc ttttcaactc aacacttccg cggttcagtc
+     1981 ctgagcatta ggctgcatgt ctatcacaag aggtgcgggg aacgacaagg gctctggaat
+     2041 tcggtctctg gtaagctccc ataagagcac cacttcgtgt accttgctaa ctcccttcat
+     2101 ccccacccgc gaaaacttaa gacgtcaccc ctgttattat cccgtgcact cctaaagtgc
+     2161 gatgggcaag aacgcaaaca attgtctgag atttatatgg gcggcggaca tagtcagaga
+     2221 gccttatata atctcccacg tcttgccagt ccgagttatg agaaacccgg gaccgatgac
+     2281 gctattacgg tcgcccagcg aggttcaaca gagcgaggca taggagtcat tacgcgtgtt
+     2341 agcttcaaca tgcgtggaag tgaaacggat ctataaaacg gcgtggagtc atcagcttga
+     2401 gcagatctaa cttactcgcc acgcgcgcaa atcgtctttc gctgtccacg ttatacgtaa
+     2461 ctcgcttgag
+//
--- /dev/null	Thu Jan 01 00:00:00 1970 +0000
+++ b/test-data/init/2-step-golden_gate_plan_simulation/construct_2/construct_2.gb	Fri May 16 11:32:06 2025 +0000
@@ -0,0 +1,279 @@
+LOCUS       construct_2             6910 bp    DNA     circular UNK 01-JAN-1980
+DEFINITION  .
+ACCESSION   construct_2
+VERSION     construct_2
+KEYWORDS    .
+SOURCE      .
+  ORGANISM  .
+            .
+FEATURES             Location/Qualifiers
+     homology        1..4
+                     /label="CGCT"
+                     /color="#f7e8f7"
+                     /ApEinfo_fwdcolor="#f7e8f7"
+     misc_feature    9..25
+                     /label="feature"
+                     /ApEinfo_fwdcolor="#b4abac"
+     CDS             complement(223..1038)
+                     /label="yet another feature"
+                     /ApEinfo_fwdcolor="#993366"
+     misc_feature    complement(139..179)
+                     /label="yet another feature"
+                     /ApEinfo_fwdcolor="#c6c9d1"
+     misc_feature    5..8
+                     /label="yet another feature"
+                     /ApEinfo_fwdcolor="#faac61"
+     misc_feature    20..25
+                     /label="feature"
+                     /ApEinfo_fwdcolor="#84b0dc"
+     gene            complement(223..1038)
+                     /label="another feature"
+                     /ApEinfo_fwdcolor="#b4abac"
+     misc_feature    189..212
+                     /label="feature"
+                     /ApEinfo_fwdcolor="#b4abac"
+     misc_feature    51..74
+                     /label="another feature"
+                     /ApEinfo_fwdcolor="#b4abac"
+     misc_feature    84..112
+                     /label="feature"
+                     /ApEinfo_fwdcolor="#b4abac"
+     misc_feature    27..137
+                     /label="yet another feature"
+                     /ApEinfo_fwdcolor="#b4abac"
+     misc_feature    3347..3377
+                     /label="another feature"
+                     /ApEinfo_fwdcolor="#b4abac"
+     -35_signal      1367..1372
+                     /label="another feature"
+                     /ApEinfo_fwdcolor="#b4abac"
+     gene            2148..3167
+                     /label="yet another feature"
+                     /ApEinfo_fwdcolor="#b4abac"
+     -35_signal      1190..1195
+                     /label="feature"
+                     /ApEinfo_fwdcolor="#b4abac"
+     misc_RNA        1226..1778
+                     /label="feature"
+                     /ApEinfo_fwdcolor="#b4abac"
+     misc_feature    3396
+                     /label="another feature"
+                     /ApEinfo_fwdcolor="#84b0dc"
+     misc_feature    3192..3239
+                     /label="feature"
+                     /ApEinfo_fwdcolor="#c6c9d1"
+     misc_RNA        complement(1229..1336)
+                     /label="yet another feature"
+                     /ApEinfo_fwdcolor="#b4abac"
+     misc_feature    1865..1873
+                     /label="feature"
+                     /ApEinfo_fwdcolor="#b4abac"
+     misc_feature    3413..3416
+                     /label="another feature"
+                     /ApEinfo_fwdcolor="#faac61"
+     rep_origin      1190..1778
+                     /label="yet another feature"
+                     /ApEinfo_fwdcolor="#ffef86"
+     misc_feature    3300..3324
+                     /label="feature"
+                     /ApEinfo_fwdcolor="#b4abac"
+     -10_signal      1345..1350
+                     /label="another feature"
+                     /ApEinfo_fwdcolor="#b4abac"
+     rep_origin      1899..2147
+                     /label="feature"
+                     /ApEinfo_fwdcolor="#ffef86"
+     misc_feature    3397..3401
+                     /label="yet another feature"
+                     /ApEinfo_fwdcolor="#84b0dc"
+     misc_feature    3395..3412
+                     /label="yet another feature"
+                     /ApEinfo_fwdcolor="#b4abac"
+     -10_signal      1211..1216
+                     /label="feature"
+                     /ApEinfo_fwdcolor="#b4abac"
+     misc_feature    3168..3191
+                     /label="another feature"
+                     /ApEinfo_fwdcolor="#b4abac"
+     CDS             2148..3167
+                     /label="yet another feature"
+                     /ApEinfo_fwdcolor="#993366"
+     misc_feature    3351..3375
+                     /label="feature"
+                     /ApEinfo_fwdcolor="#f8d3a9"
+     misc_feature    1140..1163
+                     /label="another feature"
+                     /ApEinfo_fwdcolor="#b4abac"
+     misc_feature    5..3416
+                     /source="part_A"
+                     /indicates_part=True
+                     /note="From part_A"
+                     /color="white"
+                     /ApEinfo_fwdcolor="white"
+     homology        3417..3420
+                     /label="GGAG"
+                     /color="#f7e8f7"
+                     /ApEinfo_fwdcolor="#f7e8f7"
+     misc_feature    3421..4505
+                     /source="part_G"
+                     /indicates_part=True
+                     /note="From part_G"
+                     /color="white"
+                     /ApEinfo_fwdcolor="white"
+     homology        4506..4509
+                     /label="AATG"
+                     /color="#f7e8f7"
+                     /ApEinfo_fwdcolor="#f7e8f7"
+     misc_feature    4510..6158
+                     /source="part_H"
+                     /indicates_part=True
+                     /note="From part_H"
+                     /color="white"
+                     /ApEinfo_fwdcolor="white"
+     homology        6159..6162
+                     /label="GCTT"
+                     /color="#f7e8f7"
+                     /ApEinfo_fwdcolor="#f7e8f7"
+     misc_feature    6163..6497
+                     /label="feature"
+                     /ApEinfo_fwdcolor="#f8d3a9"
+     misc_feature    6163..6497
+                     /source="part_I"
+                     /indicates_part=True
+                     /note="From part_I"
+                     /color="white"
+                     /ApEinfo_fwdcolor="white"
+     homology        6498..6501
+                     /label="GGTA"
+                     /color="#f7e8f7"
+                     /ApEinfo_fwdcolor="#f7e8f7"
+     misc_feature    6502..6910
+                     /label="another feature"
+                     /ApEinfo_fwdcolor="#faac61"
+     primer_bind     complement(6799..6819)
+                     /label="yet another feature"
+                     /ApEinfo_fwdcolor="#85dae9"
+     misc_feature    6502..6910
+                     /source="part_F"
+                     /indicates_part=True
+                     /note="From part_F"
+                     /color="white"
+                     /ApEinfo_fwdcolor="white"
+ORIGIN
+        1 cgctgtcaat atgcaggtgc tgcaggaatt tgtctccaat cgacttgaga tatcgcaagc
+       61 atgaaattat attagacacg ccagagaact tgggaagcag cactggtagt gatagcaacc
+      121 cgagtacagt aacgagtgag cttctgatca tgagctctcc tacggcgtca atgcgacgaa
+      181 tgcccagcat gcactctcgc tatccatgcc tgctagggtg gcattatgct caggaacagt
+      241 tgtagcttgg atatcgtcta gatgaaatac ctggacactg gttagcgtcg tcaagcacca
+      301 aggacattca cacgctcgcg gtctttcgtc tccctaagcg ttcggcagtc gggcgtgaag
+      361 aggttgtaat cagacggaac aaagcctgaa aaaattccag cgacgtagta ttcatgatcc
+      421 tgtaccatct gtagccgccg cggcgcacga ttgaatgtag gctactaacc ccatccgtgt
+      481 tagcgatgtg agtttctacc gcaacgaatg ctcaagcgaa ccttcttctt tcgtccgcaa
+      541 cccacaagcc gtggttatga cagctaaatt gtcccagaca tccctttatt acacaagagc
+      601 tccagcggaa tacctagtca cagcggtaat gacacaaagc tcttagttag tccagggact
+      661 acttctgtct acagcacatc acactcatta tcagcatcag tgtagagacg gagaacatgg
+      721 gctatcctat accaagatcc gccatctaaa catttgaagt ttcccgtctt ctataactta
+      781 gcactcgacg ctattctgct gagtgcgctt agtctgtagc gacttgcgaa atccataaac
+      841 tgagaattga aagagagtgc ataaccgaaa cctttgtggc atatttccgt tgaaacgtac
+      901 cagaacagcc gtttagtgcg gaacatacag tatcctgata aagcactcaa cccaacagac
+      961 accctatgcc gatagcggga tgctaacaag tatagtcatg atgatttctc ggacagcggg
+     1021 gtttggtaca gctgcaatcc gtgatttaaa ttcggacctc tgcacacacc gacggttacc
+     1081 catatcctct acggctgtag gaagttttac cttggatgtc attctgattt cggcgtatct
+     1141 cacaggatgg tccaacgaaa ctaggcttta gacgagggat gaatgaccga cccccactcg
+     1201 tggcactaac ggacagactt ccctgacggt tattcgacca ttaaagtcag acatgcgggg
+     1261 gtgaataaat tagccaaatt gtgtcgaaga aaagacgtgc ggctggcaca taaggcagtc
+     1321 ttgatcctag tcttgcaggg atgcacgtaa gtcgcctcaa ttaactgcag ccgagctcca
+     1381 ggttaccaaa gaccctagta tgccagggcc taacggttgg agtatattat gggtacgcaa
+     1441 tagtgcggaa gttaacctgg gcaacatcca ggtgagaggt tggacggaag cgacagtaag
+     1501 tggccataga ctgccgagtc gtgttaatga atcgctatac gcccatggag ttgtggggtc
+     1561 gttttatccg agtaggggcc cgctgactac ttcgtccaga caatatgccg tcttcaatag
+     1621 tctacctgag agtcatgccg gcatttccga cgctgagtga aacccgcgta gccaggcgaa
+     1681 atttgcatct tgaaatacca ctgcagatca gccagtaagg cccatataag ggcgctggtg
+     1741 ttctggcgac agataaagtg ttatctaatg taacccgcgg acttttagag gatacttgaa
+     1801 tgcgggcata tcgtcccacc agcgtcacgt ggtcgggcta gcggcagaca aactctgccg
+     1861 atgtttttct ttgccgcgat agcgggctag tcaattcact atccggcgat gaagcataga
+     1921 ttgttatcgc gcttatgcgg aggataatca agtcttggca gaacctgctc gctcatgcac
+     1981 tggtgaggcg tggttatcct aacaaccgcc taggacgaag aatgggctcg gtagggacag
+     2041 ttcgtgcgtt tagcttcgtc ccatcttaat gctgtctgga gggaggctac atgcgaacag
+     2101 aagccgtggg cgaaagttgt tgatccgggt ctaacacgga taagggccat ggtgaacgca
+     2161 tcatgcgata cttcttggta gttcttctaa catgaccgtg ccatagccct taccctttga
+     2221 agaagttaac ctatctgccg tctcctgcac gaatagcgac tggactcggg tattttggat
+     2281 acctcacgaa agcacttcga tcggccgaag catggatatt tcgccggacg ggcccgaata
+     2341 gagagccttg tatgtcggtt agtacaacgc agtcctggag acatctacgc ggatgggcct
+     2401 aggggctgga cttaacattg ggtaacgtac ctggtccaaa gtgaatgcaa agcactttta
+     2461 caaagcgcgg gtccccgtgg gtgtttaggg tagaagattg gcggatgcta cgaacgatcc
+     2521 cgctttgaaa ctatcattac atcgtgtaaa agagacactt aacaaaggcc aataaactgc
+     2581 cagtaagaat cgctcagtgc ggtgctgggg acgctaagta ggggcaacag ccagtgaagg
+     2641 acgtgaccga cctttctcag ataagatatg ctggcgtcta tctaataagc atagtgaaaa
+     2701 accaaccatt tcacttacac gaagtacatt tgcattgcta gtaaagacgc ctaaacagaa
+     2761 gtgcccttgc atgctgtatg tctatagtcc ttagggaagc atcagccctt ctacttattc
+     2821 gaggtctgag aaaccctgga caagctccga attattcaat gtgcctgtct ccgaggttag
+     2881 atagcgctat gctcttaaga gttgcacaga atgaccatcc tggaatgtcc ctggaggggt
+     2941 ctaggtatgc tgatcgaagg gtgctctaag gacttgacgt gcgtccgagg agggtgctgc
+     3001 ctccttcgcc tttagatcca acgcggatca catgcgcgtg agctaatagg atcaccttct
+     3061 gctccgattt ttaccctcct gggtcacttc cgaatgaggt agcgggcgaa atataatgtc
+     3121 tccactcgta ggtgttccct gtatgtgaag ctctatagtg gacaaaggtt tgatgaacta
+     3181 gcccccgtat acgctctcac cgacggacgc gggggtctgt tatttgaagc atcatacatg
+     3241 cgaaggtgcc ttctcagcaa cgaaaggtag tgggagtgta caagttcaat gcgccgccat
+     3301 aggtctgagt atacaagggg atgcccccat ccacaacggg attggctacc cggagagctg
+     3361 gctccgctcc aacaaataat tatattaacc tattggaatt ccacctgcat atcagaggag
+     3421 gaacttctat gggacgaaag atgcgcagct cgacaaatct caaattggaa accgtctaag
+     3481 gtctttgagc ccacgctagg ccaccgaata gttgcgagct cgtgggcaat tgctggctag
+     3541 cggtttgtat cgtatacgta acaagagatt gcgccggatt cattcgtgtg gggtgctttc
+     3601 acatcggaat actcaagagt gggggtttgc gctttaatat gacggcctca tgcaccccaa
+     3661 aaataagagc gccaatttca tcgaccacat tccggacaat tctgacttcc ctgtcggatc
+     3721 gaccctcgct cacaactcct agaactccaa gacggtagga cgtcagccga aaaggaggag
+     3781 tgacgacggg ccctcctagc tgaagcaatg gggggcgtcg accctagcct ggtgtgggac
+     3841 ttcggagggt cgggcgtgtg gccattcctg cacgaggggc ccttgcagta tcgaactttg
+     3901 acgagaaagt ggggggcgac ctataaacat agcggagttc aatactcctg caagtgcatg
+     3961 atgacgttca gcgttggcac atcgaacgcg tcgctacact tgctcaccgg aaggcaaaat
+     4021 agaccggcag ctggcccgca cggacgtcta gactcctacg ctgtcaaatg cacgatgact
+     4081 attagcatgc ggaattcgag gcggccggta catcgagaca cgctggtctt aatacctgtg
+     4141 ttatgtcaaa acaagtgtct cggcggcttt gtactacgct gtgaatgcgc atgatgttgc
+     4201 gagaagctga acgttggtag cagtctacaa cagaaccgac gagctacgga cgggttacag
+     4261 caggatcccc tcttaaggca ttattcgacg actccaggtt ctaaccgatc agtaattgcc
+     4321 tcggatggtc gtacgtgtta accgagacag caaggcacca catagacaac tgcatagggc
+     4381 gcctacaggt ccacaatcag ggtggcccaa gatcctcaaa gacttgttgc agtctctgct
+     4441 tattccgttt aacacgttgt gtgagctcta gcttactacc tcatcggtgt cgggagtgat
+     4501 ttaggaatgg aagacgcgtt tagtcttcgg cccccagacg gcaccggcag agccactgcc
+     4561 aatgcctttt acgctgaact cttcgacttt ggcatgtgcg actgactata cgccgatggc
+     4621 cctaccctgc agcggaaagg cacagggcca aaaacagtgg aagcgcaccg ctagagcttt
+     4681 actaaatcct ttagggtgaa ccggtgttca gtcaacagaa acatatgact agtccttaat
+     4741 ggcactacta aaggcggccc atctcttttg taggtcacgt ctcatcgttt agcaagcgtc
+     4801 cgccatccga ggagtatcct agtacgtgag agggtgtttt acctcatcac atggtttttg
+     4861 gctagatgtg gcagatgcca gctgatacct tacaacccgc tataacggtt tctggatcga
+     4921 cgatacaacc tgcttcggca tatcataatg gcggcctcat aggacttcca atcatggtta
+     4981 tgcgagtttg atgtgttgaa gattgtgagg ggaaaccttt ttccgagtac gttgaatctg
+     5041 cgactgatgg tgaacaactc atcgagaggg atgtgcgggc agtctccttg atgcgcgaaa
+     5101 aggagtcgcg accgcgtgtt cgtgacgcac ttgatgctag accgtagggg ctcattatct
+     5161 cctgaaacag tagctagctt ttggtgtccg agtcagctta ggcacagtaa ttgaaaagaa
+     5221 ggaaatgcgt gaaaactaaa cgtagacact ccttgctaag aattccctgg tctttttcga
+     5281 gcatagacta ccgtaggtaa aaggcttgtc gtgtcacaaa tagacttgat ctgttcggca
+     5341 tatacacatc ctactgcttc agtaaccaag gacgattctc cggccattgg actgtgggac
+     5401 cacccgcgtt caaacggaat cctctacgaa cggttaagaa aggagcccac tgcttgcgga
+     5461 gacatatcgt tgctgagtgg tacaccggtg agtcaaaaag tactgacact actggtggac
+     5521 tctcgggtac gatgtgtggg gtattggcat actatggcgc taagcgtgga atagtgtttc
+     5581 caatagccct ttacctaaga agcattctga cacatgggtt ggacttttac acagacctat
+     5641 aactcgtatc cggcctggtg atgtatgtcc gcttatcact gaatgcagga ttccgccaat
+     5701 tccgctcgcg ggttctcgga caacgggcca tggagatgga tcaatgagcc atgttgatta
+     5761 ccatttcact acacacggtt agtcaattcc ggagatcata attcgacaat tgaatatgcg
+     5821 tgatacgctt tctgttacca ggatcgttgc taattagttt ccaatgtcac agtgttgggc
+     5881 ggcgaggtat cacggcgctc tgggtagaat ggcggtgcct gactggacct cataactggt
+     5941 aacataccta tgaccaaagg aggtcagaca ccgatgagtc ggtgacatgg gcggtcacag
+     6001 cgtgccctgc atagtaatac agctcgtttc tagacatttg tcctaattcg ccacacaagt
+     6061 acgagagcgg gggtaaccca tcaccatcgt gcccgtaggt acctaatctt catcgagcgc
+     6121 tattgttaaa gtggactcag ggatcggcat ctcgtgtagc ttttattatc cggcatgcat
+     6181 gcggcgttgc atcgcttcat cgtcatcgac atatcgttag cgggacttat cagggtccca
+     6241 tcacggctgt gacagctgtt cataagtgta atagcagtca ccccaccaaa tgcaagactg
+     6301 ttcccaaact aagtgctagg gaggttggct acctatcggc gtggcagttg accgggtttt
+     6361 tcttagtacc tgccttccaa tctccgataa aagcaagatg acttcctgct tgcgctaaag
+     6421 tctgaattcg ctaagggggc agattcatta ccagagactg ccaaagtcaa ccgccgaacg
+     6481 atactggaat atatggaggt aagctcccat aagagcacca cttcgtgtac cttgctaact
+     6541 cccttcatcc ccacccgcga aaacttaaga cgtcacccct gttattatcc cgtgcactcc
+     6601 taaagtgcga tgggcaagaa cgcaaacaat tgtctgagat ttatatgggc ggcggacata
+     6661 gtcagagagc cttatataat ctcccacgtc ttgccagtcc gagttatgag aaacccggga
+     6721 ccgatgacgc tattacggtc gcccagcgag gttcaacaga gcgaggcata ggagtcatta
+     6781 cgcgtgttag cttcaacatg cgtggaagtg aaacggatct ataaaacggc gtggagtcat
+     6841 cagcttgagc agatctaact tactcgccac gcgcgcaaat cgtctttcgc tgtccacgtt
+     6901 atacgtaact
+//
Binary file test-data/init/2-step-golden_gate_plan_simulation/construct_2/construct_2.pdf has changed
--- /dev/null	Thu Jan 01 00:00:00 1970 +0000
+++ b/test-data/init/2-step-golden_gate_plan_simulation/construct_2/construct_2_summary.csv	Fri May 16 11:32:06 2025 +0000
@@ -0,0 +1,2 @@
+assembly_name,construct_id,assembly_level,construct_size,number_of_parts,depends_on,enzymes,used_in,parts
+construct_2,construct_2,1,6910,5,,BsaI,construct_4,part_A & part_G & part_H & part_I & part_F
Binary file test-data/init/2-step-golden_gate_plan_simulation/construct_2/construct_2_type2s_mix_connections_graph.pdf has changed
Binary file test-data/init/2-step-golden_gate_plan_simulation/construct_2/construct_2_type2s_mix_parts_graph.pdf has changed
--- /dev/null	Thu Jan 01 00:00:00 1970 +0000
+++ b/test-data/init/2-step-golden_gate_plan_simulation/construct_2/provided_parts_records/part_A.gb	Fri May 16 11:32:06 2025 +0000
@@ -0,0 +1,197 @@
+LOCUS       part_A                  4292 bp    DNA     circular UNK 28-OCT-2019
+DEFINITION  .
+ACCESSION   part_A
+VERSION     part_A
+KEYWORDS    "creator:SynthSys Center".
+SOURCE
+  ORGANISM  .
+            .
+FEATURES             Location/Qualifiers
+     RBS             2332..2343
+                     /label="feature"
+                     /ApEinfo_fwdcolor="#ffef86"
+     misc_feature    2208..2238
+                     /label="another feature"
+                     /ApEinfo_fwdcolor="#b4abac"
+     promoter        2289..2323
+                     /label="yet another feature"
+                     /ApEinfo_fwdcolor="#85dae9"
+     misc_feature    3162..3178
+                     /label="feature"
+                     /ApEinfo_fwdcolor="#b4abac"
+     -35_signal      228..233
+                     /label="another feature"
+                     /ApEinfo_fwdcolor="#b4abac"
+     gene            1009..2028
+                     /label="yet another feature"
+                     /ApEinfo_fwdcolor="#b4abac"
+     -35_signal      51..56
+                     /label="feature"
+                     /ApEinfo_fwdcolor="#b4abac"
+     CDS             2350..3027
+                     /label="another feature"
+                     /ApEinfo_fwdcolor="#ff00ff"
+     CDS             complement(3376..4191)
+                     /label="yet another feature"
+                     /ApEinfo_fwdcolor="#993366"
+     misc_RNA        87..639
+                     /label="feature"
+                     /ApEinfo_fwdcolor="#b4abac"
+     misc_feature    2257
+                     /label="another feature"
+                     /ApEinfo_fwdcolor="#84b0dc"
+     terminator      3119..3146
+                     /label="yet another feature"
+                     /ApEinfo_fwdcolor="#c6c9d1"
+     misc_feature    2053..2100
+                     /label="feature"
+                     /ApEinfo_fwdcolor="#c6c9d1"
+     misc_feature    2278..2281
+                     /label="another feature"
+                     /ApEinfo_fwdcolor="#ff0000"
+     misc_RNA        complement(90..197)
+                     /label="yet another feature"
+                     /ApEinfo_fwdcolor="#b4abac"
+     misc_feature    726..734
+                     /label="feature"
+                     /ApEinfo_fwdcolor="#b4abac"
+     misc_feature    2274..2277
+                     /label="another feature"
+                     /ApEinfo_fwdcolor="#faac61"
+     rep_origin      51..639
+                     /label="yet another feature"
+                     /ApEinfo_fwdcolor="#ffef86"
+     misc_feature    2161..2185
+                     /label="feature"
+                     /ApEinfo_fwdcolor="#b4abac"
+     -10_signal      206..211
+                     /label="another feature"
+                     /ApEinfo_fwdcolor="#b4abac"
+     misc_feature    complement(3292..3332)
+                     /label="yet another feature"
+                     /ApEinfo_fwdcolor="#c6c9d1"
+     rep_origin      760..1008
+                     /label="feature"
+                     /ApEinfo_fwdcolor="#ffef86"
+     terminator      3032..3103
+                     /label="another feature"
+                     /ApEinfo_fwdcolor="#c6c9d1"
+     misc_feature    3158..3161
+                     /label="yet another feature"
+                     /ApEinfo_fwdcolor="#faac61"
+     misc_feature    3173..3178
+                     /label="feature"
+                     /ApEinfo_fwdcolor="#84b0dc"
+     gene            complement(3376..4191)
+                     /label="another feature"
+                     /ApEinfo_fwdcolor="#b4abac"
+     misc_feature    2258..2262
+                     /label="yet another feature"
+                     /ApEinfo_fwdcolor="#84b0dc"
+     misc_feature    3342..3365
+                     /label="feature"
+                     /ApEinfo_fwdcolor="#b4abac"
+     misc_feature    3204..3227
+                     /label="another feature"
+                     /ApEinfo_fwdcolor="#b4abac"
+     misc_feature    2256..2273
+                     /label="yet another feature"
+                     /ApEinfo_fwdcolor="#b4abac"
+     -10_signal      72..77
+                     /label="feature"
+                     /ApEinfo_fwdcolor="#b4abac"
+     misc_feature    2029..2052
+                     /label="another feature"
+                     /ApEinfo_fwdcolor="#b4abac"
+     CDS             1009..2028
+                     /label="yet another feature"
+                     /ApEinfo_fwdcolor="#993366"
+     misc_feature    3237..3265
+                     /label="feature"
+                     /ApEinfo_fwdcolor="#b4abac"
+     misc_feature    3154..3157
+                     /label="another feature"
+                     /ApEinfo_fwdcolor="#ff0000"
+     misc_feature    3180..3290
+                     /label="yet another feature"
+                     /ApEinfo_fwdcolor="#b4abac"
+     misc_feature    2212..2236
+                     /label="feature"
+                     /ApEinfo_fwdcolor="#f8d3a9"
+     misc_feature    1..24
+                     /label="another feature"
+                     /ApEinfo_fwdcolor="#b4abac"
+ORIGIN
+        1 tcacaggatg gtccaacgaa actaggcttt agacgaggga tgaatgaccg acccccactc
+       61 gtggcactaa cggacagact tccctgacgg ttattcgacc attaaagtca gacatgcggg
+      121 ggtgaataaa ttagccaaat tgtgtcgaag aaaagacgtg cggctggcac ataaggcagt
+      181 cttgatccta gtcttgcagg gatgcacgta agtcgcctca attaactgca gccgagctcc
+      241 aggttaccaa agaccctagt atgccagggc ctaacggttg gagtatatta tgggtacgca
+      301 atagtgcgga agttaacctg ggcaacatcc aggtgagagg ttggacggaa gcgacagtaa
+      361 gtggccatag actgccgagt cgtgttaatg aatcgctata cgcccatgga gttgtggggt
+      421 cgttttatcc gagtaggggc ccgctgacta cttcgtccag acaatatgcc gtcttcaata
+      481 gtctacctga gagtcatgcc ggcatttccg acgctgagtg aaacccgcgt agccaggcga
+      541 aatttgcatc ttgaaatacc actgcagatc agccagtaag gcccatataa gggcgctggt
+      601 gttctggcga cagataaagt gttatctaat gtaacccgcg gacttttaga ggatacttga
+      661 atgcgggcat atcgtcccac cagcgtcacg tggtcgggct agcggcagac aaactctgcc
+      721 gatgtttttc tttgccgcga tagcgggcta gtcaattcac tatccggcga tgaagcatag
+      781 attgttatcg cgcttatgcg gaggataatc aagtcttggc agaacctgct cgctcatgca
+      841 ctggtgaggc gtggttatcc taacaaccgc ctaggacgaa gaatgggctc ggtagggaca
+      901 gttcgtgcgt ttagcttcgt cccatcttaa tgctgtctgg agggaggcta catgcgaaca
+      961 gaagccgtgg gcgaaagttg ttgatccggg tctaacacgg ataagggcca tggtgaacgc
+     1021 atcatgcgat acttcttggt agttcttcta acatgaccgt gccatagccc ttaccctttg
+     1081 aagaagttaa cctatctgcc gtctcctgca cgaatagcga ctggactcgg gtattttgga
+     1141 tacctcacga aagcacttcg atcggccgaa gcatggatat ttcgccggac gggcccgaat
+     1201 agagagcctt gtatgtcggt tagtacaacg cagtcctgga gacatctacg cggatgggcc
+     1261 taggggctgg acttaacatt gggtaacgta cctggtccaa agtgaatgca aagcactttt
+     1321 acaaagcgcg ggtccccgtg ggtgtttagg gtagaagatt ggcggatgct acgaacgatc
+     1381 ccgctttgaa actatcatta catcgtgtaa aagagacact taacaaaggc caataaactg
+     1441 ccagtaagaa tcgctcagtg cggtgctggg gacgctaagt aggggcaaca gccagtgaag
+     1501 gacgtgaccg acctttctca gataagatat gctggcgtct atctaataag catagtgaaa
+     1561 aaccaaccat ttcacttaca cgaagtacat ttgcattgct agtaaagacg cctaaacaga
+     1621 agtgcccttg catgctgtat gtctatagtc cttagggaag catcagccct tctacttatt
+     1681 cgaggtctga gaaaccctgg acaagctccg aattattcaa tgtgcctgtc tccgaggtta
+     1741 gatagcgcta tgctcttaag agttgcacag aatgaccatc ctggaatgtc cctggagggg
+     1801 tctaggtatg ctgatcgaag ggtgctctaa ggacttgacg tgcgtccgag gagggtgctg
+     1861 cctccttcgc ctttagatcc aacgcggatc acatgcgcgt gagctaatag gatcaccttc
+     1921 tgctccgatt tttaccctcc tgggtcactt ccgaatgagg tagcgggcga aatataatgt
+     1981 ctccactcgt aggtgttccc tgtatgtgaa gctctatagt ggacaaaggt ttgatgaact
+     2041 agcccccgta tacgctctca ccgacggacg cgggggtctg ttatttgaag catcatacat
+     2101 gcgaaggtgc cttctcagca acgaaaggta gtgggagtgt acaagttcaa tgcgccgcca
+     2161 taggtctgag tatacaaggg gatgccccca tccacaacgg gattggctac ccggagagct
+     2221 ggctccgctc caacaaataa ttatattaac ctattggaat tccacctgca tatcagagga
+     2281 gagagacctt tacggctatt ctgtttaccg gatccatcgg taccaaggat cagaaagtga
+     2341 cacggtttga acgggttgtt gtaatacttt gagtatacct ctgacgctga gcgtgtcgtc
+     2401 ctgagcgcag actcaataac atagcagtcc gacatcgccg tgatatgtaa atgcaacgaa
+     2461 tttaggtctt gactcggtct accatgtcaa aagggtagcc agatttcagc gcgaaattga
+     2521 actttgtgtt tagtgtgggg tcctcggtta caaaatagga tcagacatgt gtgattttgg
+     2581 taacctagtc tggcagtccg acagacttcg ctatgatttg atggggccgg cctataattg
+     2641 gcttgcgcaa cccgctcatc tcgggcgtgt tttacttcct gcggtcccca cgccctattt
+     2701 tcgggccagc tgtaggtgct agagtgaatg ctggcgaata agattccccg ctatttggcg
+     2761 cctcgccaca gctctggcac tatgggggga gtttctctgt tccttaaaca gcacccgttt
+     2821 ttgaggtgta ttggtttcgg ttctgcatta ggcaattcgt accgtacaat caattacgac
+     2881 acattggcgg cagttatcag ctacccatcg caaagcacac acccacatgt atctattttt
+     2941 cgcaaattcc aaaagcttcg attgagattg catcggtagt ccctcagaca tgtcgtaatc
+     3001 gaatgcctct tgttccatga gagagagaag tatggcgcga accgctctgc ctttaatttg
+     3061 gttctaccat ccacgagttt aaggggcata accctgccca gcactttccg aggctcacgt
+     3121 tcatgctacg gtagcacctt tctgcgggtc tcacgctgtc aatatgcagg tgctgcagga
+     3181 atttgtctcc aatcgacttg agatatcgca agcatgaaat tatattagac acgccagaga
+     3241 acttgggaag cagcactggt agtgatagca acccgagtac agtaacgagt gagcttctga
+     3301 tcatgagctc tcctacggcg tcaatgcgac gaatgcccag catgcactct cgctatccat
+     3361 gcctgctagg gtggcattat gctcaggaac agttgtagct tggatatcgt ctagatgaaa
+     3421 tacctggaca ctggttagcg tcgtcaagca ccaaggacat tcacacgctc gcggtctttc
+     3481 gtctccctaa gcgttcggca gtcgggcgtg aagaggttgt aatcagacgg aacaaagcct
+     3541 gaaaaaattc cagcgacgta gtattcatga tcctgtacca tctgtagccg ccgcggcgca
+     3601 cgattgaatg taggctacta accccatccg tgttagcgat gtgagtttct accgcaacga
+     3661 atgctcaagc gaaccttctt ctttcgtccg caacccacaa gccgtggtta tgacagctaa
+     3721 attgtcccag acatcccttt attacacaag agctccagcg gaatacctag tcacagcggt
+     3781 aatgacacaa agctcttagt tagtccaggg actacttctg tctacagcac atcacactca
+     3841 ttatcagcat cagtgtagag acggagaaca tgggctatcc tataccaaga tccgccatct
+     3901 aaacatttga agtttcccgt cttctataac ttagcactcg acgctattct gctgagtgcg
+     3961 cttagtctgt agcgacttgc gaaatccata aactgagaat tgaaagagag tgcataaccg
+     4021 aaacctttgt ggcatatttc cgttgaaacg taccagaaca gccgtttagt gcggaacata
+     4081 cagtatcctg ataaagcact caacccaaca gacaccctat gccgatagcg ggatgctaac
+     4141 aagtatagtc atgatgattt ctcggacagc ggggtttggt acagctgcaa tccgtgattt
+     4201 aaattcggac ctctgcacac accgacggtt acccatatcc tctacggctg taggaagttt
+     4261 taccttggat gtcattctga tttcggcgta tc
+//
--- /dev/null	Thu Jan 01 00:00:00 1970 +0000
+++ b/test-data/init/2-step-golden_gate_plan_simulation/construct_2/provided_parts_records/part_F.gb	Fri May 16 11:32:06 2025 +0000
@@ -0,0 +1,74 @@
+LOCUS       part_F                  2470 bp    DNA     circular UNK 20-OCT-2019
+DEFINITION  .
+ACCESSION   part_F
+VERSION     part_F
+KEYWORDS    .
+SOURCE
+  ORGANISM  .
+            .
+FEATURES             Location/Qualifiers
+     terminator      1991..2034
+                     /label="feature"
+                     /ApEinfo_fwdcolor="#c6c9d1"
+     terminator      10..67
+                     /label="another feature"
+                     /ApEinfo_fwdcolor="#c6c9d1"
+     rep_origin      complement(262..850)
+                     /label="yet another feature"
+                     /ApEinfo_fwdcolor="#ffef86"
+     CDS             complement(1148..1807)
+                     /label="feature"
+                     /ApEinfo_fwdcolor="#b7e6d7"
+     misc_feature    2054..2462
+                     /label="another feature"
+                     /ApEinfo_fwdcolor="#faac61"
+     primer_bind     complement(2351..2371)
+                     /label="yet another feature"
+                     /ApEinfo_fwdcolor="#85dae9"
+     terminator      1033..1127
+                     /label="feature"
+                     /ApEinfo_fwdcolor="#c6c9d1"
+ORIGIN
+        1 accctgcagt ccgctcacgg accgcaagga cgggctaatt aggaggcaac gccgatgggg
+       61 ccgcagttca gcgctgcaat gtttgctgaa cagggatgtc acgcatactc gtctacaccg
+      121 cccgtgaccc gttatcacgg ttgaagtgtc gaggactagt gctgccgctg cgtgagggac
+      181 acaagctgct atttgtccat acgccatgtg ctccgagctc atgctgccat gagacaatga
+      241 gacatgtcgc caataatcga gtgacgagtc agaatgacct ggctccgcat aaccgttcaa
+      301 agttattgac aacgcatctt tcgtagttcg tgcagcagcg gtctttcttc tatagccgac
+      361 tagatgttaa gggactcctg gataccgcta gttttaccct ctccaggaag ccagcgaggg
+      421 cgtgccgcaa gtcccaatag ataccgggca tgatcaaggg gccctgtgct ctgagtctgg
+      481 aggcgacagt gcgctgcagc tcagaggtgg ttattgcgaa ccggcaccgc tggacagcac
+      541 ccacggggac acgtaagtaa tttagggtct gggccaacgg ctcagcgcca gtaggattaa
+      601 caaactcgac taatcaatgt gccagctact tccgccgggt ctgacggggc ggcacccatt
+      661 accatgtgta ctgaataggg attccgagcg accgtaaagg cgttcctaag tgtcatatac
+      721 tggcaactag aggcactcac atcggggtta agggcccacc gtaatggcca cgcaggatac
+      781 caattggccg ggtgaggatc tattcacgcc gatggggagt tctaagcccg agttattggt
+      841 gctagtggct tggacctgtg tgtcgatgat gcgcgatata gaggcgcggg actagctggg
+      901 gtccacaggt gctatgttgg gtgcgctcta tggacgtccg gaaagagact aatgcaacgg
+      961 tatggcatca agcgcgaccg atggggagac tggaaattgt gaaatagtgt actggcgcga
+     1021 tcattaaata ttgcatacgc tgtccgttat gacctagagg ggattatttg aacgagaggt
+     1081 cttgggaact gcattggaga tggtcagatg gaatgcgaaa tgtatcacca cgggcggccg
+     1141 aaggggagac agactatccc tagttggctt cggtaaccgt aatcagatgg aacggcgggt
+     1201 aatgctgata ccgagcgctc gtacggcgcg tggtgatgac acggtctgat gtcgtagcaa
+     1261 acgagccggt cctcgtacaa caggctcaca tctcaatcac gcataccaac cgattacata
+     1321 acgcgatcta tatttgggga actctactta ctaccctgtc tgcagagtgc gttctatgat
+     1381 cctcccctac gtgacggcca acgattagtc ggcctaggtc taacggataa aaggactccc
+     1441 cagtacatgt gaccatatga gccaggccgt cgagcgcgac cactccccag cctatagtga
+     1501 ggaggagcgg tattcggtta aagtttagct agcgactttt ttgtcaccga agtagggacg
+     1561 ggcatattgt ttacccttaa agcggggatc aatccattgg ggtcggcagt cataaaagga
+     1621 tctaagcccc caaagcgcat ggtaaggtac tcccgggttt cccgaaatct aggcaagtct
+     1681 cggtgggtgt cagcctgacg agtagggcac gttaccgagg ccacggtgct tgatgactac
+     1741 gggtgaatcg aaccgatcaa acgcacagca tctaaaccct ggtgtactgg tccacagggg
+     1801 gacaagtctt tgaagtgtcg cttcagatga cggccgcggg ccaatctgaa ttgttagaca
+     1861 ccgacagtag ggtgtgcaac tcgctcgggc aagagtgtaa aggcacatcc tccccgaggt
+     1921 aagttatacc gctctaacgg cgcgggcagc ttttcaactc aacacttccg cggttcagtc
+     1981 ctgagcatta ggctgcatgt ctatcacaag aggtgcgggg aacgacaagg gctctggaat
+     2041 tcggtctctg gtaagctccc ataagagcac cacttcgtgt accttgctaa ctcccttcat
+     2101 ccccacccgc gaaaacttaa gacgtcaccc ctgttattat cccgtgcact cctaaagtgc
+     2161 gatgggcaag aacgcaaaca attgtctgag atttatatgg gcggcggaca tagtcagaga
+     2221 gccttatata atctcccacg tcttgccagt ccgagttatg agaaacccgg gaccgatgac
+     2281 gctattacgg tcgcccagcg aggttcaaca gagcgaggca taggagtcat tacgcgtgtt
+     2341 agcttcaaca tgcgtggaag tgaaacggat ctataaaacg gcgtggagtc atcagcttga
+     2401 gcagatctaa cttactcgcc acgcgcgcaa atcgtctttc gctgtccacg ttatacgtaa
+     2461 ctcgcttgag
+//
--- /dev/null	Thu Jan 01 00:00:00 1970 +0000
+++ b/test-data/init/2-step-golden_gate_plan_simulation/construct_2/provided_parts_records/part_G.gb	Fri May 16 11:32:06 2025 +0000
@@ -0,0 +1,36 @@
+LOCUS       part_G                  1119 bp    DNA     linear   UNK 25-OCT-2019
+DEFINITION  .
+ACCESSION   part_G
+VERSION     part_G
+KEYWORDS    .
+SOURCE
+  ORGANISM  .
+            .
+FEATURES             Location/Qualifiers
+     GoldenGate      1..13
+                     /label="feature"
+                     /ApEinfo_fwdcolor="#faac61"
+     GoldenGate      1107..1119
+                     /label="another feature"
+                     /ApEinfo_fwdcolor="#faac61"
+ORIGIN
+        1 tggctaggtc tccggaggaa cttctatggg acgaaagatg cgcagctcga caaatctcaa
+       61 attggaaacc gtctaaggtc tttgagccca cgctaggcca ccgaatagtt gcgagctcgt
+      121 gggcaattgc tggctagcgg tttgtatcgt atacgtaaca agagattgcg ccggattcat
+      181 tcgtgtgggg tgctttcaca tcggaatact caagagtggg ggtttgcgct ttaatatgac
+      241 ggcctcatgc accccaaaaa taagagcgcc aatttcatcg accacattcc ggacaattct
+      301 gacttccctg tcggatcgac cctcgctcac aactcctaga actccaagac ggtaggacgt
+      361 cagccgaaaa ggaggagtga cgacgggccc tcctagctga agcaatgggg ggcgtcgacc
+      421 ctagcctggt gtgggacttc ggagggtcgg gcgtgtggcc attcctgcac gaggggccct
+      481 tgcagtatcg aactttgacg agaaagtggg gggcgaccta taaacatagc ggagttcaat
+      541 actcctgcaa gtgcatgatg acgttcagcg ttggcacatc gaacgcgtcg ctacacttgc
+      601 tcaccggaag gcaaaataga ccggcagctg gcccgcacgg acgtctagac tcctacgctg
+      661 tcaaatgcac gatgactatt agcatgcgga attcgaggcg gccggtacat cgagacacgc
+      721 tggtcttaat acctgtgtta tgtcaaaaca agtgtctcgg cggctttgta ctacgctgtg
+      781 aatgcgcatg atgttgcgag aagctgaacg ttggtagcag tctacaacag aaccgacgag
+      841 ctacggacgg gttacagcag gatcccctct taaggcatta ttcgacgact ccaggttcta
+      901 accgatcagt aattgcctcg gatggtcgta cgtgttaacc gagacagcaa ggcaccacat
+      961 agacaactgc atagggcgcc tacaggtcca caatcagggt ggcccaagat cctcaaagac
+     1021 ttgttgcagt ctctgcttat tccgtttaac acgttgtgtg agctctagct tactacctca
+     1081 tcggtgtcgg gagtgattta ggaatgtgag acctagcca
+//
--- /dev/null	Thu Jan 01 00:00:00 1970 +0000
+++ b/test-data/init/2-step-golden_gate_plan_simulation/construct_2/provided_parts_records/part_H.gb	Fri May 16 11:32:06 2025 +0000
@@ -0,0 +1,109 @@
+LOCUS       part_H                  4246 bp    DNA     circular UNK 07-NOV-2019
+DEFINITION  .
+ACCESSION   part_H
+VERSION     part_H
+KEYWORDS    "creator:militzis" "marker:SmR".
+SOURCE
+  ORGANISM  .
+            .
+FEATURES             Location/Qualifiers
+     primer_bind     1966..1982
+                     /label="feature"
+                     /ApEinfo_fwdcolor="#a020f0"
+     terminator      3774..3860
+                     /label="another feature"
+                     /ApEinfo_fwdcolor="#c6c9d1"
+     rep_origin      complement(63..651)
+                     /label="yet another feature"
+                     /ApEinfo_fwdcolor="#ffef86"
+     CDS             2015..3667
+                     /label="feature"
+                     /ApEinfo_fwdcolor="#ffef86"
+     promoter        1987..2005
+                     /label="another feature"
+                     /ApEinfo_fwdcolor="#c6c9d1"
+     CDS             complement(744..1535)
+                     /label="yet another feature"
+                     /ApEinfo_fwdcolor="#b7e6d7"
+     misc_feature    3667..3670
+                     /label="feature"
+                     /ApEinfo_fwdcolor="#ff0000"
+     terminator      3952..3979
+                     /label="another feature"
+                     /ApEinfo_fwdcolor="#c6c9d1"
+     primer_bind     complement(3694..3710)
+                     /label="yet another feature"
+                     /ApEinfo_fwdcolor="#a020f0"
+ORIGIN
+        1 aacatggatc cgttacacaa ggtctactcc gcgatgtggg ctcaccccct agatcccttt
+       61 tcctaccgcc cgatcgcaaa ctacgcgtag cttcacggct ctctgtctgt cggctgacct
+      121 gcggctcatt tttcatccat ttagtatagg ttgcaagggg tgtgactgat ttctctacat
+      181 aaagaagcct atagtaccac atgcaatgcc gatccggtga gtgctgtagt ccttattccg
+      241 gcttggtggc ctcctgccac ttaggatcgc aacggaattc tagttcctaa cgtcccttct
+      301 acctgattaa gtgagagaaa acggaaccaa cctaagacat ctatgcatcg atgttttaca
+      361 atgacgagag tgctccatgg ttcatactgg ggacatagtt tcgggcattt aggcccgcaa
+      421 gagttcgggt atctagtttt tccgtacgaa aaacaccacc ttagaacagg tcacacgagt
+      481 acagagagta aacccgtaat gttttcaccc attccccgat ttgactgcaa acaaacaagt
+      541 ctccccgtat cgcttcattg ttttatcaac gggggcggaa tcgtagacca ataattaacg
+      601 acaactctag gcttttcaac cgacgggggc aaagtctgaa atgcctgaga aaggcacaac
+      661 gacggtggga ggggcccctg caaatattgt tctagcactc caggattcac accaacctcg
+      721 gggccagcca ttccggtact tttggttata cggcaggata ccacgtccct aagcggagta
+      781 tacacggagt tgccttagcc aggtacccgc ttaaccgtcc aactcccctg agtggtacgt
+      841 ccatcacgcc gcgtaaacgg tttccaaaag agtaagctta ggcattcctc acctgtcacg
+      901 tccctcttaa gatccctgcc tcgaactggg atcttgtaaa aatgtggcca tgggagcagg
+      961 agttcatgtg gggcgacggc gatcggacgc ccctttaaac cagagccctt gacgctagga
+     1021 gatcagtaga gttacccgga atgagatctc taatctaagt ttgatacgac gaaagcggcc
+     1081 tgacgggcgc tactcatgct cttagaatcc gtcacttatt ctgccacaga tccgaggtac
+     1141 tgtggatgtt atttgcggag actggcctcg gattaggggt actaagtccg agatgtcatg
+     1201 agttaagccc aattcactag ttgcattgtc aacgagtgga cctccaaaac gatgttaggg
+     1261 tcactacccc aagcgagcac ctccgctagg accacacacc cccactttca aggtattttg
+     1321 ttcgcatcac ataccgtctt ccctttgcgg tctaatagtg aagcttggga caaggaacgg
+     1381 ccagtcgcag caatactacg agtgagagtc ctaggcgcaa ctacgtaggt tccgcaaacg
+     1441 tgttgtggat tactgttgag gtttgagttt atccggaggg ctgtgtaaga attaccagct
+     1501 agtcaaaagc cctgcatggc ctgatctcat tagatacctc ggccgggccg aggcaaatcc
+     1561 gtgaacaaaa accatgcatt tattctatca tagaaacatt tgttacacat ctactggccg
+     1621 tgtgccgtga acaagaactc aatttagtta tcaagggact gctgtaaacg gagccgcgtc
+     1681 acccgcgtgc acacgtgtag tgcttacgcc ggcccccgtc cagcgacacc gtagtcaagt
+     1741 aaaaaatgcg tattcacgac ctcacgtacc cgtttcggag ggtgccttga cgcatagagt
+     1801 tgtctgtgtg attggaattt gtaaggggtc cgcccatgta aaatagagcc catgtcttac
+     1861 gaggacatga ggaaacatag gttctggtgg ccttccaaga agctgcctct acactccttc
+     1921 tctttaatca ccgaaaacct taccttgaga ggacgtcatt cgtcaaaaca aaatattggt
+     1981 ggcaaattaa gattaccact ataggcggtc tcaaatggaa gacgcgttta gtcttcggcc
+     2041 cccagacggc accggcagag ccactgccaa tgccttttac gctgaactct tcgactttgg
+     2101 catgtgcgac tgactatacg ccgatggccc taccctgcag cggaaaggca cagggccaaa
+     2161 aacagtggaa gcgcaccgct agagctttac taaatccttt agggtgaacc ggtgttcagt
+     2221 caacagaaac atatgactag tccttaatgg cactactaaa ggcggcccat ctcttttgta
+     2281 ggtcacgtct catcgtttag caagcgtccg ccatccgagg agtatcctag tacgtgagag
+     2341 ggtgttttac ctcatcacat ggtttttggc tagatgtggc agatgccagc tgatacctta
+     2401 caacccgcta taacggtttc tggatcgacg atacaacctg cttcggcata tcataatggc
+     2461 ggcctcatag gacttccaat catggttatg cgagtttgat gtgttgaaga ttgtgagggg
+     2521 aaaccttttt ccgagtacgt tgaatctgcg actgatggtg aacaactcat cgagagggat
+     2581 gtgcgggcag tctccttgat gcgcgaaaag gagtcgcgac cgcgtgttcg tgacgcactt
+     2641 gatgctagac cgtaggggct cattatctcc tgaaacagta gctagctttt ggtgtccgag
+     2701 tcagcttagg cacagtaatt gaaaagaagg aaatgcgtga aaactaaacg tagacactcc
+     2761 ttgctaagaa ttccctggtc tttttcgagc atagactacc gtaggtaaaa ggcttgtcgt
+     2821 gtcacaaata gacttgatct gttcggcata tacacatcct actgcttcag taaccaagga
+     2881 cgattctccg gccattggac tgtgggacca cccgcgttca aacggaatcc tctacgaacg
+     2941 gttaagaaag gagcccactg cttgcggaga catatcgttg ctgagtggta caccggtgag
+     3001 tcaaaaagta ctgacactac tggtggactc tcgggtacga tgtgtggggt attggcatac
+     3061 tatggcgcta agcgtggaat agtgtttcca atagcccttt acctaagaag cattctgaca
+     3121 catgggttgg acttttacac agacctataa ctcgtatccg gcctggtgat gtatgtccgc
+     3181 ttatcactga atgcaggatt ccgccaattc cgctcgcggg ttctcggaca acgggccatg
+     3241 gagatggatc aatgagccat gttgattacc atttcactac acacggttag tcaattccgg
+     3301 agatcataat tcgacaattg aatatgcgtg atacgctttc tgttaccagg atcgttgcta
+     3361 attagtttcc aatgtcacag tgttgggcgg cgaggtatca cggcgctctg ggtagaatgg
+     3421 cggtgcctga ctggacctca taactggtaa catacctatg accaaaggag gtcagacacc
+     3481 gatgagtcgg tgacatgggc ggtcacagcg tgccctgcat agtaatacag ctcgtttcta
+     3541 gacatttgtc ctaattcgcc acacaagtac gagagcgggg gtaacccatc accatcgtgc
+     3601 ccgtaggtac ctaatcttca tcgagcgcta ttgttaaagt ggactcaggg atcggcatct
+     3661 cgtgtagctt tgagaccggg gcccgaggat gtatgccttg catggaactt gactaatctc
+     3721 agtaatactg gccgtgtatt ggtgtgtctt ccttggcctc acatgggaac attaccacat
+     3781 ataacatcat ggggttcagt ctattactaa cgaagtcact aaaacgtact cgacggcgca
+     3841 tgcgagtatc gacgtagcgg ttggttacct taagctgact tggtctatgc atacactgat
+     3901 tagcttgtag cggtggcctt cgacgtctgt atcgtaggcg ttgtttgttg caaacacaaa
+     3961 cgacctagcg tcaagacccc ttctagagaa agagagtgac gactcttgtc agttcaactc
+     4021 tgtggtacgc cgctgcgaga tgcgcgttgc cacggcagac cccatgaact cgttcaagct
+     4081 aaactctagt tcacgctaca tgtgtttgtt tctgcgtacg caaaagtact aggtacagct
+     4141 atcttttggg ccccaagtgg gaccacactt tcggtcttcc tagcaaggct ataaaaccgt
+     4201 atggcatgag tccttgatct gcatttcgtt tagacagagc gagatg
+//
--- /dev/null	Thu Jan 01 00:00:00 1970 +0000
+++ b/test-data/init/2-step-golden_gate_plan_simulation/construct_2/provided_parts_records/part_I.gb	Fri May 16 11:32:06 2025 +0000
@@ -0,0 +1,69 @@
+LOCUS       part_I                  2396 bp    DNA     circular UNK 29-OCT-2019
+DEFINITION  .
+ACCESSION   part_I
+VERSION     part_I
+KEYWORDS    .
+SOURCE
+  ORGANISM  .
+            .
+FEATURES             Location/Qualifiers
+     terminator      1991..2034
+                     /label="feature"
+                     /ApEinfo_fwdcolor="#c6c9d1"
+     terminator      10..67
+                     /label="another feature"
+                     /ApEinfo_fwdcolor="#c6c9d1"
+     rep_origin      complement(262..850)
+                     /label="yet another feature"
+                     /ApEinfo_fwdcolor="#ffef86"
+     misc_feature    2054..2388
+                     /label="feature"
+                     /ApEinfo_fwdcolor="#f8d3a9"
+     CDS             complement(1148..1807)
+                     /label="another feature"
+                     /ApEinfo_fwdcolor="#b7e6d7"
+     terminator      1033..1127
+                     /label="yet another feature"
+                     /ApEinfo_fwdcolor="#c6c9d1"
+ORIGIN
+        1 accctgcagt ccgcatccaa gcttgctggg gcctctatcc gggacctgct tccgtacccc
+       61 gtccgcctat caggctaacg actctgcctg ccattcaggc tcaccggcaa gttggagtga
+      121 cctcttcatc gatacaaata gcgcatacgc cagacatacc gcccacgcac tcgaccataa
+      181 aattccccgt cacggcgcgc acctccacac tccgtggcct aaggaacgtg gcagccggct
+      241 gggccacttt ttagactacc atcggctcat ttttagaagg ccaccggctg tccgtcaatc
+      301 gtacccgttt aggcctcctt aacacagttc cgaatagtta cctcaagatg cggatacagg
+      361 atggctcccc caggggtcta gttcagtctt ttgtcgcctg cgcttgaacc tttatgcagc
+      421 gatccacaaa cggaacaccg agatttgtat ttgggagggc aggctttgga ggaacggtgt
+      481 atgtactttt gcttggtacc ctaggtaccc cacgatctaa tcggtcttcc tgacaggtga
+      541 cagaggaggc cgtaactgcg accacaggct aactgcggcc ttaacttatg gtcgcgaact
+      601 gcataagggc gtcgccgccc gttgtcagtg cgaattctgt tagtcgtcgt gtacaccttc
+      661 cggtctaaca tctcgtagtt actagaagag cggatgggtc ctgtaaagag agcaggttcc
+      721 cgtcttctct cactttaccg gtactggtgt gaccgggtgt gagtgatact gtgattccgc
+      781 tactattgct atgcctgccg tcgtagctag atacgatccc agaacatttt gggctgattt
+      841 caagtctctc cgggattccg taacgacggt tctcgaactg aatagctttg agatatcgca
+      901 atattccttg gttgactctt gtccccggga cacaagtcgt gtgcaatatg tatacgtcag
+      961 tatgctcgag actcctaagg ccgcatatct atgctatcac tattgcctat gcagtaactg
+     1021 gctaagcttg tggggtactt gcacatgact catgtcaagg tcggaggatt cccagacagt
+     1081 tggcatcatc agtgcgttca aggcggggag cgaccagcca gatattgatc gacgaggtgc
+     1141 cacgaagtgt tccaaggtta tttttagtat gttacatcca tcagcgggtc taggccatac
+     1201 cggtctatat tatggtgagt cgtataggct gtaatgccgg ctgcacaatc tacggccgat
+     1261 tgcacataaa atggtcaact aacgacaagc tctgattctc aacttggata aaccttatca
+     1321 caaaaggtcc gacacggttc agccgaggta aatcaaagtg attatgactc caggagcgac
+     1381 acaaagttgc actgtctact gttggtcatc accgtactgc aaacgggtaa agatacttag
+     1441 ctttgttagc tattgcagaa cctaattgct ttcctgccct aaggcgatcc ggatcctcta
+     1501 tttatcaagt taattatcag agcttagctc aagtcaaagg tcttagtcag gtatggttta
+     1561 gtcggcttat ctcgctccga taaacccctc gcgcctcgga ttcattcacg cgtttatatg
+     1621 gtgaggggcg acccgtaggc tagtcgcact cctcggcaat taatcctaca gaaacctaga
+     1681 catgggagtt gcgatcctcg agatacggcc tgagagggtc ggcaaagtgg gtgcttcatt
+     1741 ctcttcggcg gagttcgcag gctctagaat gcctggtttt catctcgaca taaattacga
+     1801 tgttatctcg tgcattatta ccccttttct gcaggtttta agtcgagtct agtcttacta
+     1861 acgctgttct tcccgagaag gtgtccaggt tagatctcgg catattttca ctggcgcgct
+     1921 atccgacagg aagacagcac ccgttaagcg ccccagtcac atcaagatca gtcctatgtt
+     1981 gactcttgct ggaggtcttc tcgaatccag ctaatgttgg attacccgcc cctctggaat
+     2041 tcggtctctg cttttattat ccggcatgca tgcggcgttg catcgcttca tcgtcatcga
+     2101 catatcgtta gcgggactta tcagggtccc atcacggctg tgacagctgt tcataagtgt
+     2161 aatagcagtc accccaccaa atgcaagact gttcccaaac taagtgctag ggaggttggc
+     2221 tacctatcgg cgtggcagtt gaccgggttt ttcttagtac ctgccttcca atctccgata
+     2281 aaagcaagat gacttcctgc ttgcgctaaa gtctgaattc gctaaggggg cagattcatt
+     2341 accagagact gccaaagtca accgccgaac gatactggaa tatatggagg tatgag
+//
--- /dev/null	Thu Jan 01 00:00:00 1970 +0000
+++ b/test-data/init/2-step-golden_gate_plan_simulation/construct_3/construct_3.gb	Fri May 16 11:32:06 2025 +0000
@@ -0,0 +1,457 @@
+LOCUS       construct_3            11530 bp    DNA     circular UNK 01-JAN-1980
+DEFINITION  .
+ACCESSION   construct_3
+VERSION     construct_3
+KEYWORDS    .
+SOURCE      .
+  ORGANISM  .
+            .
+FEATURES             Location/Qualifiers
+     homology        1..4
+                     /label="CAGA"
+                     /color="#f7e8f7"
+                     /ApEinfo_fwdcolor="#f7e8f7"
+     homology        5..8
+                     /label="GGAG"
+                     /color="#f7e8f7"
+                     /ApEinfo_fwdcolor="#f7e8f7"
+     exon            2009..2206
+                     /label="feature"
+                     /ApEinfo_fwdcolor="#75c6a9"
+     gene            2009..2206
+                     /label="another feature"
+                     /ApEinfo_fwdcolor="#faac61"
+     misc_feature    9..2206
+                     /label="another feature"
+                     /ApEinfo_fwdcolor="#f58a5e"
+     misc_feature    9..2206
+                     /source="part_B"
+                     /indicates_part=True
+                     /note="From part_B"
+                     /color="white"
+                     /ApEinfo_fwdcolor="white"
+     homology        2207..2210
+                     /label="AATG"
+                     /color="#f7e8f7"
+                     /ApEinfo_fwdcolor="#f7e8f7"
+     CDS             2211..5468
+                     /label="feature"
+                     /ApEinfo_fwdcolor="#ffef86"
+     CDS             5469..5597
+                     /label="another feature"
+                     /ApEinfo_fwdcolor="#ffef86"
+     misc_feature    4679
+                     /label="yet another feature"
+                     /ApEinfo_fwdcolor="#b1ff67"
+     misc_feature    5324
+                     /label="another feature"
+                     /ApEinfo_fwdcolor="#b1ff67"
+     misc_feature    4271
+                     /label="yet another feature"
+                     /ApEinfo_fwdcolor="#b1ff67"
+     misc_feature    2211..5599
+                     /source="part_C"
+                     /indicates_part=True
+                     /note="From part_C"
+                     /color="white"
+                     /ApEinfo_fwdcolor="white"
+     homology        5600..5603
+                     /label="TTCG"
+                     /color="#f7e8f7"
+                     /ApEinfo_fwdcolor="#f7e8f7"
+     misc_feature    6192..6221
+                     /label="another feature"
+                     /ApEinfo_fwdcolor="#b1ff67"
+     CDS             5604..6116
+                     /label="feature"
+                     /ApEinfo_fwdcolor="#84b0dc"
+     misc_feature    6126..6191
+                     /label="feature"
+                     /ApEinfo_fwdcolor="#b7e6d7"
+     CDS             6168..6191
+                     /label="another feature"
+                     /ApEinfo_fwdcolor="#84b0dc"
+     misc_feature    5604..6224
+                     /source="part_D"
+                     /indicates_part=True
+                     /note="From part_D"
+                     /color="white"
+                     /ApEinfo_fwdcolor="white"
+     homology        6225..6228
+                     /label="GCTT"
+                     /color="#f7e8f7"
+                     /ApEinfo_fwdcolor="#f7e8f7"
+     3'UTR           6232..6541
+                     /label="feature"
+                     /ApEinfo_fwdcolor="#c6c9d1"
+     misc_feature    6229..6231
+                     /label="yet another feature"
+                     /ApEinfo_fwdcolor="#b1ff67"
+     misc_feature    6229..6541
+                     /source="part_E"
+                     /indicates_part=True
+                     /note="From part_E"
+                     /color="white"
+                     /ApEinfo_fwdcolor="white"
+     homology        6542..6545
+                     /label="GGTA"
+                     /color="#f7e8f7"
+                     /ApEinfo_fwdcolor="#f7e8f7"
+     misc_feature    6546..6954
+                     /label="another feature"
+                     /ApEinfo_fwdcolor="#faac61"
+     primer_bind     complement(6843..6863)
+                     /label="yet another feature"
+                     /ApEinfo_fwdcolor="#85dae9"
+     misc_feature    6546..6954
+                     /source="part_F"
+                     /indicates_part=True
+                     /note="From part_F"
+                     /color="white"
+                     /ApEinfo_fwdcolor="white"
+     homology        6955..6958
+                     /label="CGCT"
+                     /color="#f7e8f7"
+                     /ApEinfo_fwdcolor="#f7e8f7"
+     misc_feature    3420^3421
+                     /source="part_A"
+                     /indicates_part=True
+                     /note="From part_A"
+                     /color="white"
+                     /ApEinfo_fwdcolor="white"
+     misc_feature    10374^10375
+                     /source="part_A"
+                     /indicates_part=True
+                     /note="From part_A"
+                     /color="white"
+                     /ApEinfo_fwdcolor="white"
+     misc_feature    5..6958
+                     /source="construct_1"
+                     /indicates_part=True
+                     /note="From construct_1"
+                     /color="white"
+                     /ApEinfo_fwdcolor="white"
+     homology        6959..6962
+                     /label="GTCA"
+                     /color="#f7e8f7"
+                     /ApEinfo_fwdcolor="#f7e8f7"
+     misc_feature    6963..6966
+                     /label="feature"
+                     /ApEinfo_fwdcolor="#ff0000"
+     misc_feature    6963..7004
+                     /source="part_L"
+                     /indicates_part=True
+                     /note="From part_L"
+                     /color="white"
+                     /ApEinfo_fwdcolor="white"
+     homology        7005..7008
+                     /label="ACCC"
+                     /color="#f7e8f7"
+                     /ApEinfo_fwdcolor="#f7e8f7"
+     CDS             complement(7202..7993)
+                     /label="feature"
+                     /ApEinfo_fwdcolor="#b7e6d7"
+     CDS             complement(7202..8107)
+                     /label="feature"
+                     /ApEinfo_fwdcolor="#993366"
+     misc_feature    7073..7101
+                     /label="another feature"
+                     /ApEinfo_fwdcolor="#b4abac"
+     -35_signal      8418..8423
+                     /label="yet another feature"
+                     /ApEinfo_fwdcolor="#b4abac"
+     misc_feature    7178..7201
+                     /label="another feature"
+                     /ApEinfo_fwdcolor="#b4abac"
+     -10_signal      8396..8401
+                     /label="feature"
+                     /ApEinfo_fwdcolor="#b4abac"
+     -35_signal      8241..8246
+                     /label="feature"
+                     /ApEinfo_fwdcolor="#b4abac"
+     misc_RNA        8277..8829
+                     /label="another feature"
+                     /ApEinfo_fwdcolor="#b4abac"
+     misc_feature    7016..7126
+                     /label="feature"
+                     /ApEinfo_fwdcolor="#b4abac"
+     misc_RNA        complement(8280..8387)
+                     /label="another feature"
+                     /ApEinfo_fwdcolor="#b4abac"
+     misc_feature    8916..8924
+                     /label="yet another feature"
+                     /ApEinfo_fwdcolor="#b4abac"
+     misc_feature    complement(7128..7168)
+                     /label="yet another feature"
+                     /ApEinfo_fwdcolor="#c6c9d1"
+     misc_feature    8191..8214
+                     /label="feature"
+                     /ApEinfo_fwdcolor="#b4abac"
+     -10_signal      8262..8267
+                     /label="yet another feature"
+                     /ApEinfo_fwdcolor="#b4abac"
+     gene            complement(7202..8107)
+                     /label="another feature"
+                     /ApEinfo_fwdcolor="#b4abac"
+     rep_origin      8241..8829
+                     /label="yet another feature"
+                     /ApEinfo_fwdcolor="#ffef86"
+     misc_feature    7040..7063
+                     /label="another feature"
+                     /ApEinfo_fwdcolor="#b4abac"
+     misc_feature    7009..7014
+                     /label="feature"
+                     /ApEinfo_fwdcolor="#84b0dc"
+     misc_feature    10219..10242
+                     /label="another feature"
+                     /ApEinfo_fwdcolor="#b4abac"
+     misc_feature    10398..10428
+                     /label="yet another feature"
+                     /ApEinfo_fwdcolor="#b4abac"
+     CDS             9199..10218
+                     /label="feature"
+                     /ApEinfo_fwdcolor="#993366"
+     gene            9199..10218
+                     /label="yet another feature"
+                     /ApEinfo_fwdcolor="#b4abac"
+     misc_feature    10441..10458
+                     /label="yet another feature"
+                     /ApEinfo_fwdcolor="#b4abac"
+     misc_feature    10351..10375
+                     /label="yet another feature"
+                     /ApEinfo_fwdcolor="#b4abac"
+     misc_feature    10402..10426
+                     /label="feature"
+                     /ApEinfo_fwdcolor="#f8d3a9"
+     misc_feature    10243..10290
+                     /label="feature"
+                     /ApEinfo_fwdcolor="#c6c9d1"
+     misc_feature    10446..10451
+                     /label="feature"
+                     /ApEinfo_fwdcolor="#84b0dc"
+     terminator      10441..10443
+                     /label="yet another feature"
+                     /ApEinfo_fwdcolor="#c6c9d1"
+     misc_feature    7009..10458
+                     /source="part_J"
+                     /indicates_part=True
+                     /note="From part_J"
+                     /color="white"
+                     /ApEinfo_fwdcolor="white"
+     homology        10459..10462
+                     /label="GGAG"
+                     /color="#f7e8f7"
+                     /ApEinfo_fwdcolor="#f7e8f7"
+     promoter        10539..10717
+                     /label="another feature"
+                     /ApEinfo_fwdcolor="#c6c9d1"
+     misc_feature    11527..11530
+                     /label="yet another feature"
+                     /ApEinfo_fwdcolor="#ff0000"
+     terminator      11274..11526
+                     /label="feature"
+                     /ApEinfo_fwdcolor="#c6c9d1"
+     CDS             10719..11269
+                     /label="another feature"
+                     /ApEinfo_fwdcolor="#b7e6d7"
+     misc_feature    10463..11530
+                     /source="part_K"
+                     /indicates_part=True
+                     /note="From part_K"
+                     /color="white"
+                     /ApEinfo_fwdcolor="white"
+ORIGIN
+        1 cagaggagag catacggtgc tctgggctca cacgtacttc ctcttgtcac gcgcctttgt
+       61 agagcattag ggcggaggtc actgggacgg ggatcagaga gcttaaaatc ccaagtagca
+      121 gtgcctaagg tgtagaatct tgtgcagatc ttcgtctggc ccgaaacctg ggcctccaca
+      181 acaatgtcgg gtcttttata atttgaaaac atcgcgcctt acccgcaccg cgcaggacga
+      241 ttagacacag ggggtcatgt ccatggttcg gggtaagcca aatttacatc gagtgtgggc
+      301 ttcattgagg agagggcgtt acgatacccg ttaaatgaaa acccggacag tctctaactg
+      361 ataggcctga taatcgccaa atgaagtcgc aattagcagt acatgactgg cagatatgtc
+      421 gccggagacg gtatggggga cctatcctag gttggcacgc gagcgcgaat gacgcctatc
+      481 ttatccccct gcacgtgatg gtatcgtccc aactatcttt tacctcatca acgttttcct
+      541 gcataatctg caagatggag agtccgcgag tgcggggagt acgagatcac aaatctgccc
+      601 tgaagacaaa gctcgcaggc cgtactcagg aaatagcatc gactcacaca tatcgggaac
+      661 ggcaaagagt gcatcggcca atgcaaacta ttgaacgtcc atgaaattgt gtcaaactac
+      721 tagtgtgtgg acttgcgtca aggccatggc gcaatactca aagccccggt atttatcccc
+      781 cgcagagtat ccgtgcggat ggagttccac agctctttgg acatgcaatg cgtggcgcta
+      841 catgctccgc tgatacagaa tatctaatgt ctcgcctctt gccgtcgacc ctacaactac
+      901 tgcacgggca gagtggacgc gacccctgag cggtgcagaa ccttagtata aggcaagggt
+      961 ggcacggccg agccgcactt gctcctacta ggccgtgctc gaagctattg atgcaagcac
+     1021 agtattcccg atttgtaaag caaggtgccc gtagccatac acccagctac tcaccggcca
+     1081 atttcgaccc tctctatctc agacctccgc atattcccaa actcctgctc aagtatgaaa
+     1141 tgaccggctc ctcctaaggc ctgcggacat ggagtcatgc gtggaatgcc gtgtaggtag
+     1201 ggtacacaca gccttaccat gtagggcaat aaattataga ctactgacat tgattccttg
+     1261 agggcccgtt cacttgtggg ggaaccagga aggcgccgat agtcatcact taaacacatg
+     1321 cgacgcatcc atttcaagaa agacacgcta cgggtctaca ccgcctatag ttctaatttg
+     1381 ggccccggta cgcacatcga tgtactctcc attacagcat agcacatcag cggccctagt
+     1441 tagcgcttct ttttgttcca acattcaata gcggggactg cattatcctc accctatttg
+     1501 ttgcataggt atttggccgt atacttggga aagagcaacc acgggagtgc actagaaact
+     1561 gattcaccca tgttataacg cgttgctcgc aagtcgtact gtggccacgc acaggtcagg
+     1621 caatcgcaac catgtcttag cagtttgtaa gaagaccttt aaacatgtac ctcacagcaa
+     1681 tctcggaact tttaattttc ctgagtcaat gacatgctag ctccgtccac ttgtaatcac
+     1741 cgtcataaca cagttagcct gcaaaagggc gtgtacacct tgccacttta aagctgaccg
+     1801 aataacctac ctacaggaga tgcttagtgc cacggaatga tctcgcaatg cttagtctta
+     1861 cacccagtga atcaacccaa gacctcgccg actgaacggt attgagtcca atcccgagag
+     1921 gcaatttatg gccgttagtg acagtcggtc gctgatagaa taaggcagac tcgtcttaag
+     1981 cgggctgctt taagagaaaa tggagccctg acgaagaagt ggatgaacca ggttttgaca
+     2041 acgtcccata ttggtaatgt aggctcgtta tcaagagata ggtttagaag gctcaatgct
+     2101 cgacgtaaaa gaagtcttaa gctctatgag ccagtgatga gagctaatta tagggcgcat
+     2161 tcgttggggt aaggttgcga attgtcattt aactaaaacc gacggcaatg gtttcaccgg
+     2221 agctgagatc gcattaaagt cacactacga attatttgtc cccgcggctc cagagacaaa
+     2281 tttctaggag tgggttcatg gagaaccgtg acaagcatgg tagcttcaaa tagcgtcatc
+     2341 ggatcttaaa gtgattgtga catatatggg attgcgcgtc tctcttacac aagctagtgt
+     2401 gcgcgaggtg ctgaacacct attacgtcaa ctcccgggat cccggcgggt tacagagaca
+     2461 taagcagggt gtccatcatt aacttcgatg ttgagcccgt gccctgatca aacacctctc
+     2521 gtagtagtgg gtgccggccg tgtattattt tgggggagag gatgcgccct aagcaatttc
+     2581 tttccatcgg ccagccattc gacgccggca cgcaagttgt tgcgggcact gttgcagttc
+     2641 ccgtactaga gtctcaagtc tagaggtacc agcatcagga agatgggtac ttcgtgtgga
+     2701 tcttctcctg aacctgaaac ctgaagagct aaagcgcgtc gcgctgccat acgataagtc
+     2761 gctctcattt ccggaagacg tcgttgggtg atggcgaaca atcgcgaaac gaaaatcgcg
+     2821 gtcggtatgt tgattcaaga cgggctacgg gcgggttact aacaggtgcg cagaaatgtg
+     2881 atgggtcact tgaccatgaa ctttcgcgcc gtcgcttctg tggactggcc ggctccctga
+     2941 tagtgcacta gcccgttgat atgcccatta ccatttggcg gcgcagtgtg ccagcgggat
+     3001 taagatgcgt ggcgtacaac tatccgcact ttgctgacgc acaaaggcaa ctgatggaca
+     3061 gccttcgggc attcgactgg ttggctgagt tcgcctgcct attaatatgc ttgtggaaat
+     3121 tgatttacag cgcctacttc tacttaggtg tacctattta cggcacaggg ataaaggctg
+     3181 acagaaaagt cctggacagg tcataggtag ttgtcagacc tacaatggta taacttgaga
+     3241 gtcctgtacc gcacatgcgg ttgtagctag atgtccagaa gaccgtagct agcgacgagt
+     3301 gggttgcacg cgcattttgg gaaggggctg cgcgagggtg gggtcacggg ttattccatt
+     3361 tctaaatgct aaaccagcag ttgctttagt tctgacctag caggcatgtc atatgtatgg
+     3421 ctagattatt agtacaatgc aggactaaga aagcctgaga cttaaatgcg ttggtttttc
+     3481 agccgacggg ccgggagggc agatggccga atgcgcactg aggagtgcat tgcgagggaa
+     3541 taggcggacc accaggtccc ctcacatact gtggataaac ctacccaggg acaactcacg
+     3601 ccatcatttt caagagtagc actactttcc actaagtacg gtttgtcgag agccggtggc
+     3661 accgtgcgac gagcttgtgg gcactaggcg aaccgggtta tataggactg ccttgcggtg
+     3721 cgggaatact ttaccccgtg gagaggccat aaaagcttac atttattgta gccgctagcg
+     3781 gtttcgacgc gctcaagtgg ggctttatct tagagtatca aataatgccc tctcagcttc
+     3841 atcttgattt ttgtgtttgg ggtagtgtat ccgatgggtc accttcttga ccttggggag
+     3901 ctccatccat cgtaccaata ctccgtttct ttgtgttgcc taccgagtaa tcgaataccg
+     3961 cacgagggct agaatctaat ttaaggtggg tcttatccct gttgtttgga cctaacgctg
+     4021 taacaaatca cttccgcgac gggtgtcatt acgtcttcta tccgccaccg gttcaacagt
+     4081 gcgtcgaatg ccaagtccct attacccgca ttgtaaagcc attacaatac ctccggtgat
+     4141 ataattgatt gccggttggc aagggatcat ctgtacgggc cgcgattgat tgctgataag
+     4201 gaacggcggt aaggaacgta tcgcgtacga ggttgtacac tggaaccgct aaacaagcgg
+     4261 tatcgctaaa ttaccggcga ttatatcaag ggaatcttag gtagcacgaa gccctacgcc
+     4321 ctggaaacag gatcggcgcg aggccgtgga catattagcc tacgtttttt tacacccaga
+     4381 tttccgacga tgtccacagc taaggctatc ctaaaccgca aacacatata accgcagtat
+     4441 aaagcacggg atgattcctt ggccatcttg caagcagtgc aaggcaattc tggtgatagg
+     4501 ggcaaggcag tgaaccgagt ggtcagcgta ttgtgaccct gcaattgtca tggcagataa
+     4561 ttgtttatga acctgtttca cacacccatc ccttggatct ccagcgtagt tactaatagt
+     4621 acgatttcct ggtgttctgt cacccgcctt gctgccttca cgcctgcccc acgttttgct
+     4681 gtccactgaa tatcgctcta attaataggt gtcacactgt atcaggtaag tccattccgg
+     4741 gtgctattgg atcattcctg agatgtacca ccgatcccat aggcgttagg tcttacatct
+     4801 ggagtgaaaa agatcagcat cgaactatag gtagataaag gtcatgactg ttaacagaga
+     4861 atcgttccta tcgcaacctt cactaactgg aaggcacccc cacactttga ttagtaagcc
+     4921 cctagcgaat gtagtgatcc aagaacatcg agtatacttt agctctcggt tcaggcatgt
+     4981 atgcaatcga ccacccttcc gttcagagta ctctcaacca gcagatttct aaactttata
+     5041 gcctccgccc actaaaattg ccttatctca ggttgactct tggatgtagc tgtaatctaa
+     5101 catacacatg gagctgcggc aaattatcgt acgtccaaac caccaccgga tcagtggcga
+     5161 tactattctc gcaaaaaagc catccagcat tggaacaagt gttaaccagc atttttctga
+     5221 gtcccccgga aagaaagttg actacactac atccataaat gctagagtgt ggattcgcca
+     5281 tgtgttacaa cggtcaaccg aaaggttagc atgatacttc gttgttcaat cggacgttcg
+     5341 agcgccctcc ctgtttatca cttgatcccc cttttgaaac atgtgcgctg cgacgcaggg
+     5401 ctgggagagt caccggaaac caaaagcccg acctcggacg tgtagggccc tccgtttgcc
+     5461 atcaatggcg atgtaggatt ctcttttaat acaacgttca ctcaattaac gtcttggtat
+     5521 aagcgtcgaa cgtgaccgag gttgacacca gtgtcacggc tgcgccgggg tttgttgctc
+     5581 cgcgtgtaca gggtattggt tcgatggtgc ctcctctacg tagatctact ggataaccgt
+     5641 ccccaatatc cgcttcccaa cgtagattgc cgacaggcat aagcttcggg ggcgcaaagg
+     5701 ccgacgtccg cattgcagtg tagctttgtg agcaggaagt gtgatagtct ttcgattatt
+     5761 aaagtctgag ctgaatgaaa aaaggtccaa cgaatggagg acgcgaagac atgggtgtct
+     5821 cttatggccc gagcgggagt aatggcggtt cgtacataaa ggctgaaagg attctggcgt
+     5881 tagctgtctt acgttggatt ggcccttcaa attatcgatg ttagctgatt cggtgtaccg
+     5941 ggcgaggaaa gcgctctcag aacaacttca tatacgaggt tcgactataa tggtctaagc
+     6001 tcctgggcta gtctcaagaa gcgggtacct ttagtagcac gtatcgacgg caaagcaaag
+     6061 aataaaaact tggctttgca tcgtgcaaag atttctaact aggttgttta agggctggta
+     6121 tctatgtccc gctataacag cgcgcctaca gtagaagttt aaccatgaca tacctttgaa
+     6181 gtgttcgtat cacacacaag gaaggagcat gtggacacca ctgagctttg atcagcacgc
+     6241 gtctcagagt ttcaggggga cccaaattac tggtcctcaa ttgggacgcg accgcatctc
+     6301 cccacgaaag cttatgggga ttgcccactg cccagcttca aatctgaagg ttcggcttat
+     6361 tgacagggtc taacacgcag ctcaactgct cgaggttaga ggcgtaatga cgggccccga
+     6421 tagccttcta cgattacgtc cagcaggaac cccacagctt ttccctacgt ctaacaccgt
+     6481 gaaagcaaaa ctgtctgccc ttttacatgg tctttaagga atctctgcac ttatgttatt
+     6541 aggtaagctc ccataagagc accacttcgt gtaccttgct aactcccttc atccccaccc
+     6601 gcgaaaactt aagacgtcac ccctgttatt atcccgtgca ctcctaaagt gcgatgggca
+     6661 agaacgcaaa caattgtctg agatttatat gggcggcgga catagtcaga gagccttata
+     6721 taatctccca cgtcttgcca gtccgagtta tgagaaaccc gggaccgatg acgctattac
+     6781 ggtcgcccag cgaggttcaa cagagcgagg cataggagtc attacgcgtg ttagcttcaa
+     6841 catgcgtgga agtgaaacgg atctataaaa cggcgtggag tcatcagctt gagcagatct
+     6901 aacttactcg ccacgcgcgc aaatcgtctt tcgctgtcca cgttatacgt aactcgctgt
+     6961 cacgctagag accgtatgag gtgggcggat agtggtgact tcaaacccct aagatgccag
+     7021 cgcaatacgg catcgcaggg caagcaacac cgcacagcat gtccctaaag ggaagattta
+     7081 atacggactc agtcaagttg tgagaaacga caatacattg agtggaatgc cctttggtac
+     7141 gttggcgata gatctaacga gaaacttcaa cgagatctag agtatcggac tgagatgcat
+     7201 catggctagg gattgctgaa tggatatctt tgccaaaatg agctcgacta ggaatctcag
+     7261 actgccagct acgaaaagct gggggatatt catttccgct cttgtaaggc gcacgatgac
+     7321 cctgtggagc aaaattcgac gcggcaacgt agtcaaagta cggcctatct gggacggaga
+     7381 tgggattgtt tctgtattca tgccggcctc ttgagattgt aaggataccc ggccacagtc
+     7441 tcgtaagaaa cccgatatcg ctcaaacgaa ttgacatcag ttagggcttg cgctctagca
+     7501 accacgcgtc gggtgttcga ctgaatttaa gatccagcgc aaaccattcc ttaaaggcgg
+     7561 tccaggtgaa accggctctg ataatgtaca gtggattgtc cagttcgctt caaagtgcaa
+     7621 tcaggcaagg tactggcaag tcaccgcttg gggccggttt cagtggagct ttatcgacaa
+     7681 aaggccgggc cctttggcct agagctcact tttggtgtcg ttcacgagtg agaactttgg
+     7741 ctcgcagctt gaatgcttgt cacgtttagg gttatacaac gtttctataa actacctatg
+     7801 acaaatcccg atcttctgaa actccataag gactaagaga gtccgcgaca gtttcacttg
+     7861 gtcggtgcta ttgactatgt cacgcatgcc cggtaaagct tttaagcaaa gcctgatata
+     7921 tcacgggagg ttactcaaag cattttctaa agggacagcg gactcacatt agcctaatat
+     7981 aaacccgatc aggccatgca cctcgattca ccggaaggta gtaccatgca ccggatattt
+     8041 gggacaacag tgaatagtac atcgtaaaat gtcaaggcct agctattttt cactggtgtc
+     8101 ttatctctat tacaacacac acggatgtcc cgagcctaca ctttcaaata tactcaaggt
+     8161 tcgctgttaa gggtaataca agagtgctcg gtttagtatc catatgttgg tacaagtgac
+     8221 tgtgctagcc gtaaattaat tcggcttcca ttccagcttg ggtgtttagg gtctagacgg
+     8281 ttgaaaccag aaagagtaca gacaaaaccg tagctctccc aaggttgatc ctccagacac
+     8341 ctacccacac tagtagcgca ggcctagagg agacgttagg agcggaattg tacattcagt
+     8401 atcgcattaa gcacaaagac agacaaacct agaagccact tatcccctcg taggagtaca
+     8461 acggcagcgc tttcgggagg agttgcctaa ctacgctctg gacagcaagt cccagaatga
+     8521 agaaaatgac ttggcgagaa cccaccacta catgcagggt cttgggaccg gtcagcacag
+     8581 cttatccatg cggcaattcc ggacgaccgc gaatgaggat cacgacactg ccgatgttgc
+     8641 accattgacc ttctcctatg caacaagggc ttaagatggt agatggtaat agagtagcct
+     8701 gcgaccttat gcggtaatac acaaaaaccg gtaaacagtg cgttgatgct gtgtgctggc
+     8761 gcatttgtgt accttgctgg gctcgtataa aattctgtca gcaggacgtt cacctccctt
+     8821 ctgctagtcg ctaggcacaa acggaaaagg tctaatcgcg cgcgtgctcg ttagagtact
+     8881 ggggcctccc accacggatg atcacctcgc cgatacattt ggccttatgt ctcaataaga
+     8941 cctcatggtc tatcctacac catagatttg gaaagtctag ttgctgccta gcaggctgat
+     9001 agcaagcgtc gtacgaggat cgaggaaggg cactcatggg agtgtagcgc tagccatagt
+     9061 tgacctgtca gccggtcaag gttggtccga acctagccag ttagacgacc agctccccca
+     9121 ctattgcaca gtgcctgtat aagcacgtca gtgtctggca ccactgtgcg cggtgtggtc
+     9181 ctcgggacga tcttcctacg gctacccatg cgctagtgat tacagacgat cgttttttct
+     9241 ttttctgtgg tgcaaataca caagatacgt caagagtcct agcagcctca tcttgccaat
+     9301 tgcaggggta ccgattcacc catggtatca gtcacgcaaa aaaagacgac atcggagttg
+     9361 ctggcgactg gcaaaagaaa acatctatct gccgtggcgt tcgtctagcg cagcgagccg
+     9421 actgactact ccgttatctc aaatttagtt tcgtaagatc ttcacgggag ccggccagct
+     9481 gaagaatcta taggtctacc gctagaggaa gcccgtttac aaccgacgta ctagtccgac
+     9541 agcaatcgtc agcatgccaa tttattgtat caggttgaga atgcaccact acggaatcga
+     9601 cgtgccactg gccgcacgat actagtgcgc tggtaaacag gccaggagct ctaaatctgg
+     9661 agtggtgtga atttaaccgc ggaacgattg ttgcacgcgg tccctgtgac tctgttggga
+     9721 gcactgtccc cggctccgga taagtgatgt gaacgaaaag gtgggctgac cagagatagg
+     9781 gttaaggacg ggcgatcgta gtggacgatt actgctgatc ttccgagcac tctgagtcgc
+     9841 gcggcgtatc gggagttacc ccgctcgcta cacatctgaa ttccgccgga tactatgggt
+     9901 gcagagtgga tcaccttttc gtgacccgta tattcgtcgt tctcatcact gtcctccgcg
+     9961 atttatttca atcgtcggtt tcgccagatg cattcctggg gaagtcatcg cgacagtgcg
+    10021 ctgcgcgcac agctcttctt ggtttattcg agattgtggt ttatcaacat ggtctatcta
+    10081 cggactgatt agaatattcc cacgttaagc cgacgtgcat tggtactggc tccttaatta
+    10141 agcgcagagg gtaggcgcct tttcttgtgc aaaccattat atgaggaact agcaaacact
+    10201 atggcgcaat atgtccacgt gactcgagca ttctgtgttg cggtagcgat ttcactagtc
+    10261 acaaacggat agattctacg gcgcacccgg tgcatcgttg tatgttcagc aatttggtca
+    10321 tatcccgctc ctctattcaa tctctttttt cgtcaggggg ggcacatact tggagcagct
+    10381 gcgcctaaca ttacaataag cagtcggagc tcagtacaaa acccttatct tagcggtccg
+    10441 ttctggaatt cggtctcagg agagacactc cttcatcaac agcagaggtt acatacgttt
+    10501 aacctgaccg atggttgccc atcgaaagca aggacccacg ggtaggcagc tgttgtttga
+    10561 tatgcttttg tccccggaag gcgccgataa aattatacgc cgtcccccgc gtccgttacg
+    10621 agcttcgtga tgttgcgggc tgaagttccc tacgagtcaa taggccaact cgaatggcta
+    10681 aatggttgca acccacaggc tcaactttga aggtaatacg ccaaaatcca atatgctctt
+    10741 tcgggtagcg cataaaacct tctgggggcc actgcagaca gtcatggagg actacgtgca
+    10801 acactacgct ctagagtgat gatgtggcag tcaaccgagg gctgttaaga gaagtctgtg
+    10861 cacgaaaatc aatgagtcgg tgtaatcttc accttcctac aaaccaaggc ttgagggcct
+    10921 caatttcgag caccacttct tgaccaagcc gttcgccggt ataggagtta cgaattcggg
+    10981 tcgtctgccg tctttgaacc atagataagt acctcccgag tcgggagaac acgaatcgca
+    11041 tcagaactca tcgaagggtg ttactttgcc catcggcatc cccgaagatt aattgcattc
+    11101 gaaattttaa cttcgagaat catccgtgct aaccaacgtg gacgagctat gaacgtttac
+    11161 gtgttcagta tctaggaatt gacacgtctc cgatagcggg agtcacggca tgagttacgg
+    11221 cttttgtgac cagcgtctgt gtaattttat tgacagtttc atatatagtg tctcgtcttg
+    11281 cctttgagat tcacaggctg taagagggat gccgtcgtgt atatgcctgc agttagagct
+    11341 tccttgtcag gacgagcaac tcactccttc tggtgatgct ttgctagcat gtagcttcgg
+    11401 gtacttgcgg aaaaggacag cctacagtgt ctgcggcggt acgtcactaa tatgacatac
+    11461 gctgtggaca tcgtgaagcg gcgaatcgct ccagattgag gtttacagag tactccatag
+    11521 tcacacaact
+//
Binary file test-data/init/2-step-golden_gate_plan_simulation/construct_3/construct_3.pdf has changed
--- /dev/null	Thu Jan 01 00:00:00 1970 +0000
+++ b/test-data/init/2-step-golden_gate_plan_simulation/construct_3/construct_3_summary.csv	Fri May 16 11:32:06 2025 +0000
@@ -0,0 +1,2 @@
+assembly_name,construct_id,assembly_level,construct_size,number_of_parts,depends_on,enzymes,used_in,parts
+construct_3,construct_3,2,11530,4,construct_1,AarI,,construct_1 & part_L & part_J & part_K
Binary file test-data/init/2-step-golden_gate_plan_simulation/construct_3/construct_3_type2s_mix_connections_graph.pdf has changed
Binary file test-data/init/2-step-golden_gate_plan_simulation/construct_3/construct_3_type2s_mix_parts_graph.pdf has changed
--- /dev/null	Thu Jan 01 00:00:00 1970 +0000
+++ b/test-data/init/2-step-golden_gate_plan_simulation/construct_3/provided_parts_records/construct_1.gb	Fri May 16 11:32:06 2025 +0000
@@ -0,0 +1,385 @@
+LOCUS       construct_1            10366 bp    DNA     circular UNK 01-JAN-1980
+DEFINITION  .
+ACCESSION   construct_1
+VERSION     construct_1
+KEYWORDS    .
+SOURCE      .
+  ORGANISM  .
+            .
+FEATURES             Location/Qualifiers
+     homology        1..4
+                     /label="CGCT"
+                     /color="#f7e8f7"
+                     /ApEinfo_fwdcolor="#f7e8f7"
+     misc_feature    9..25
+                     /label="feature"
+                     /ApEinfo_fwdcolor="#b4abac"
+     CDS             complement(223..1038)
+                     /label="yet another feature"
+                     /ApEinfo_fwdcolor="#993366"
+     misc_feature    complement(139..179)
+                     /label="yet another feature"
+                     /ApEinfo_fwdcolor="#c6c9d1"
+     misc_feature    5..8
+                     /label="yet another feature"
+                     /ApEinfo_fwdcolor="#faac61"
+     misc_feature    20..25
+                     /label="feature"
+                     /ApEinfo_fwdcolor="#84b0dc"
+     gene            complement(223..1038)
+                     /label="another feature"
+                     /ApEinfo_fwdcolor="#b4abac"
+     misc_feature    189..212
+                     /label="feature"
+                     /ApEinfo_fwdcolor="#b4abac"
+     misc_feature    51..74
+                     /label="another feature"
+                     /ApEinfo_fwdcolor="#b4abac"
+     misc_feature    84..112
+                     /label="feature"
+                     /ApEinfo_fwdcolor="#b4abac"
+     misc_feature    27..137
+                     /label="yet another feature"
+                     /ApEinfo_fwdcolor="#b4abac"
+     misc_feature    3347..3377
+                     /label="another feature"
+                     /ApEinfo_fwdcolor="#b4abac"
+     -35_signal      1367..1372
+                     /label="another feature"
+                     /ApEinfo_fwdcolor="#b4abac"
+     gene            2148..3167
+                     /label="yet another feature"
+                     /ApEinfo_fwdcolor="#b4abac"
+     -35_signal      1190..1195
+                     /label="feature"
+                     /ApEinfo_fwdcolor="#b4abac"
+     misc_RNA        1226..1778
+                     /label="feature"
+                     /ApEinfo_fwdcolor="#b4abac"
+     misc_feature    3396
+                     /label="another feature"
+                     /ApEinfo_fwdcolor="#84b0dc"
+     misc_feature    3192..3239
+                     /label="feature"
+                     /ApEinfo_fwdcolor="#c6c9d1"
+     misc_RNA        complement(1229..1336)
+                     /label="yet another feature"
+                     /ApEinfo_fwdcolor="#b4abac"
+     misc_feature    1865..1873
+                     /label="feature"
+                     /ApEinfo_fwdcolor="#b4abac"
+     misc_feature    3413..3416
+                     /label="another feature"
+                     /ApEinfo_fwdcolor="#faac61"
+     rep_origin      1190..1778
+                     /label="yet another feature"
+                     /ApEinfo_fwdcolor="#ffef86"
+     misc_feature    3300..3324
+                     /label="feature"
+                     /ApEinfo_fwdcolor="#b4abac"
+     -10_signal      1345..1350
+                     /label="another feature"
+                     /ApEinfo_fwdcolor="#b4abac"
+     rep_origin      1899..2147
+                     /label="feature"
+                     /ApEinfo_fwdcolor="#ffef86"
+     misc_feature    3397..3401
+                     /label="yet another feature"
+                     /ApEinfo_fwdcolor="#84b0dc"
+     misc_feature    3395..3412
+                     /label="yet another feature"
+                     /ApEinfo_fwdcolor="#b4abac"
+     -10_signal      1211..1216
+                     /label="feature"
+                     /ApEinfo_fwdcolor="#b4abac"
+     misc_feature    3168..3191
+                     /label="another feature"
+                     /ApEinfo_fwdcolor="#b4abac"
+     CDS             2148..3167
+                     /label="yet another feature"
+                     /ApEinfo_fwdcolor="#993366"
+     misc_feature    3351..3375
+                     /label="feature"
+                     /ApEinfo_fwdcolor="#f8d3a9"
+     misc_feature    1140..1163
+                     /label="another feature"
+                     /ApEinfo_fwdcolor="#b4abac"
+     misc_feature    5..3416
+                     /source="part_A"
+                     /indicates_part=True
+                     /note="From part_A"
+                     /color="white"
+                     /ApEinfo_fwdcolor="white"
+     homology        3417..3420
+                     /label="GGAG"
+                     /color="#f7e8f7"
+                     /ApEinfo_fwdcolor="#f7e8f7"
+     exon            5421..5618
+                     /label="feature"
+                     /ApEinfo_fwdcolor="#75c6a9"
+     gene            5421..5618
+                     /label="another feature"
+                     /ApEinfo_fwdcolor="#faac61"
+     misc_feature    3421..5618
+                     /label="another feature"
+                     /ApEinfo_fwdcolor="#f58a5e"
+     misc_feature    3421..5618
+                     /source="part_B"
+                     /indicates_part=True
+                     /note="From part_B"
+                     /color="white"
+                     /ApEinfo_fwdcolor="white"
+     homology        5619..5622
+                     /label="AATG"
+                     /color="#f7e8f7"
+                     /ApEinfo_fwdcolor="#f7e8f7"
+     CDS             5623..8880
+                     /label="feature"
+                     /ApEinfo_fwdcolor="#ffef86"
+     CDS             8881..9009
+                     /label="another feature"
+                     /ApEinfo_fwdcolor="#ffef86"
+     misc_feature    8091
+                     /label="yet another feature"
+                     /ApEinfo_fwdcolor="#b1ff67"
+     misc_feature    8736
+                     /label="another feature"
+                     /ApEinfo_fwdcolor="#b1ff67"
+     misc_feature    7683
+                     /label="yet another feature"
+                     /ApEinfo_fwdcolor="#b1ff67"
+     misc_feature    5623..9011
+                     /source="part_C"
+                     /indicates_part=True
+                     /note="From part_C"
+                     /color="white"
+                     /ApEinfo_fwdcolor="white"
+     homology        9012..9015
+                     /label="TTCG"
+                     /color="#f7e8f7"
+                     /ApEinfo_fwdcolor="#f7e8f7"
+     misc_feature    9604..9633
+                     /label="another feature"
+                     /ApEinfo_fwdcolor="#b1ff67"
+     CDS             9016..9528
+                     /label="feature"
+                     /ApEinfo_fwdcolor="#84b0dc"
+     misc_feature    9538..9603
+                     /label="feature"
+                     /ApEinfo_fwdcolor="#b7e6d7"
+     CDS             9580..9603
+                     /label="another feature"
+                     /ApEinfo_fwdcolor="#84b0dc"
+     misc_feature    9016..9636
+                     /source="part_D"
+                     /indicates_part=True
+                     /note="From part_D"
+                     /color="white"
+                     /ApEinfo_fwdcolor="white"
+     homology        9637..9640
+                     /label="GCTT"
+                     /color="#f7e8f7"
+                     /ApEinfo_fwdcolor="#f7e8f7"
+     3'UTR           9644..9953
+                     /label="feature"
+                     /ApEinfo_fwdcolor="#c6c9d1"
+     misc_feature    9641..9643
+                     /label="yet another feature"
+                     /ApEinfo_fwdcolor="#b1ff67"
+     misc_feature    9641..9953
+                     /source="part_E"
+                     /indicates_part=True
+                     /note="From part_E"
+                     /color="white"
+                     /ApEinfo_fwdcolor="white"
+     homology        9954..9957
+                     /label="GGTA"
+                     /color="#f7e8f7"
+                     /ApEinfo_fwdcolor="#f7e8f7"
+     misc_feature    9958..10366
+                     /label="another feature"
+                     /ApEinfo_fwdcolor="#faac61"
+     primer_bind     complement(10255..10275)
+                     /label="yet another feature"
+                     /ApEinfo_fwdcolor="#85dae9"
+     misc_feature    9958..10366
+                     /source="part_F"
+                     /indicates_part=True
+                     /note="From part_F"
+                     /color="white"
+                     /ApEinfo_fwdcolor="white"
+ORIGIN
+        1 cgctgtcaat atgcaggtgc tgcaggaatt tgtctccaat cgacttgaga tatcgcaagc
+       61 atgaaattat attagacacg ccagagaact tgggaagcag cactggtagt gatagcaacc
+      121 cgagtacagt aacgagtgag cttctgatca tgagctctcc tacggcgtca atgcgacgaa
+      181 tgcccagcat gcactctcgc tatccatgcc tgctagggtg gcattatgct caggaacagt
+      241 tgtagcttgg atatcgtcta gatgaaatac ctggacactg gttagcgtcg tcaagcacca
+      301 aggacattca cacgctcgcg gtctttcgtc tccctaagcg ttcggcagtc gggcgtgaag
+      361 aggttgtaat cagacggaac aaagcctgaa aaaattccag cgacgtagta ttcatgatcc
+      421 tgtaccatct gtagccgccg cggcgcacga ttgaatgtag gctactaacc ccatccgtgt
+      481 tagcgatgtg agtttctacc gcaacgaatg ctcaagcgaa ccttcttctt tcgtccgcaa
+      541 cccacaagcc gtggttatga cagctaaatt gtcccagaca tccctttatt acacaagagc
+      601 tccagcggaa tacctagtca cagcggtaat gacacaaagc tcttagttag tccagggact
+      661 acttctgtct acagcacatc acactcatta tcagcatcag tgtagagacg gagaacatgg
+      721 gctatcctat accaagatcc gccatctaaa catttgaagt ttcccgtctt ctataactta
+      781 gcactcgacg ctattctgct gagtgcgctt agtctgtagc gacttgcgaa atccataaac
+      841 tgagaattga aagagagtgc ataaccgaaa cctttgtggc atatttccgt tgaaacgtac
+      901 cagaacagcc gtttagtgcg gaacatacag tatcctgata aagcactcaa cccaacagac
+      961 accctatgcc gatagcggga tgctaacaag tatagtcatg atgatttctc ggacagcggg
+     1021 gtttggtaca gctgcaatcc gtgatttaaa ttcggacctc tgcacacacc gacggttacc
+     1081 catatcctct acggctgtag gaagttttac cttggatgtc attctgattt cggcgtatct
+     1141 cacaggatgg tccaacgaaa ctaggcttta gacgagggat gaatgaccga cccccactcg
+     1201 tggcactaac ggacagactt ccctgacggt tattcgacca ttaaagtcag acatgcgggg
+     1261 gtgaataaat tagccaaatt gtgtcgaaga aaagacgtgc ggctggcaca taaggcagtc
+     1321 ttgatcctag tcttgcaggg atgcacgtaa gtcgcctcaa ttaactgcag ccgagctcca
+     1381 ggttaccaaa gaccctagta tgccagggcc taacggttgg agtatattat gggtacgcaa
+     1441 tagtgcggaa gttaacctgg gcaacatcca ggtgagaggt tggacggaag cgacagtaag
+     1501 tggccataga ctgccgagtc gtgttaatga atcgctatac gcccatggag ttgtggggtc
+     1561 gttttatccg agtaggggcc cgctgactac ttcgtccaga caatatgccg tcttcaatag
+     1621 tctacctgag agtcatgccg gcatttccga cgctgagtga aacccgcgta gccaggcgaa
+     1681 atttgcatct tgaaatacca ctgcagatca gccagtaagg cccatataag ggcgctggtg
+     1741 ttctggcgac agataaagtg ttatctaatg taacccgcgg acttttagag gatacttgaa
+     1801 tgcgggcata tcgtcccacc agcgtcacgt ggtcgggcta gcggcagaca aactctgccg
+     1861 atgtttttct ttgccgcgat agcgggctag tcaattcact atccggcgat gaagcataga
+     1921 ttgttatcgc gcttatgcgg aggataatca agtcttggca gaacctgctc gctcatgcac
+     1981 tggtgaggcg tggttatcct aacaaccgcc taggacgaag aatgggctcg gtagggacag
+     2041 ttcgtgcgtt tagcttcgtc ccatcttaat gctgtctgga gggaggctac atgcgaacag
+     2101 aagccgtggg cgaaagttgt tgatccgggt ctaacacgga taagggccat ggtgaacgca
+     2161 tcatgcgata cttcttggta gttcttctaa catgaccgtg ccatagccct taccctttga
+     2221 agaagttaac ctatctgccg tctcctgcac gaatagcgac tggactcggg tattttggat
+     2281 acctcacgaa agcacttcga tcggccgaag catggatatt tcgccggacg ggcccgaata
+     2341 gagagccttg tatgtcggtt agtacaacgc agtcctggag acatctacgc ggatgggcct
+     2401 aggggctgga cttaacattg ggtaacgtac ctggtccaaa gtgaatgcaa agcactttta
+     2461 caaagcgcgg gtccccgtgg gtgtttaggg tagaagattg gcggatgcta cgaacgatcc
+     2521 cgctttgaaa ctatcattac atcgtgtaaa agagacactt aacaaaggcc aataaactgc
+     2581 cagtaagaat cgctcagtgc ggtgctgggg acgctaagta ggggcaacag ccagtgaagg
+     2641 acgtgaccga cctttctcag ataagatatg ctggcgtcta tctaataagc atagtgaaaa
+     2701 accaaccatt tcacttacac gaagtacatt tgcattgcta gtaaagacgc ctaaacagaa
+     2761 gtgcccttgc atgctgtatg tctatagtcc ttagggaagc atcagccctt ctacttattc
+     2821 gaggtctgag aaaccctgga caagctccga attattcaat gtgcctgtct ccgaggttag
+     2881 atagcgctat gctcttaaga gttgcacaga atgaccatcc tggaatgtcc ctggaggggt
+     2941 ctaggtatgc tgatcgaagg gtgctctaag gacttgacgt gcgtccgagg agggtgctgc
+     3001 ctccttcgcc tttagatcca acgcggatca catgcgcgtg agctaatagg atcaccttct
+     3061 gctccgattt ttaccctcct gggtcacttc cgaatgaggt agcgggcgaa atataatgtc
+     3121 tccactcgta ggtgttccct gtatgtgaag ctctatagtg gacaaaggtt tgatgaacta
+     3181 gcccccgtat acgctctcac cgacggacgc gggggtctgt tatttgaagc atcatacatg
+     3241 cgaaggtgcc ttctcagcaa cgaaaggtag tgggagtgta caagttcaat gcgccgccat
+     3301 aggtctgagt atacaagggg atgcccccat ccacaacggg attggctacc cggagagctg
+     3361 gctccgctcc aacaaataat tatattaacc tattggaatt ccacctgcat atcagaggag
+     3421 agcatacggt gctctgggct cacacgtact tcctcttgtc acgcgccttt gtagagcatt
+     3481 agggcggagg tcactgggac ggggatcaga gagcttaaaa tcccaagtag cagtgcctaa
+     3541 ggtgtagaat cttgtgcaga tcttcgtctg gcccgaaacc tgggcctcca caacaatgtc
+     3601 gggtctttta taatttgaaa acatcgcgcc ttacccgcac cgcgcaggac gattagacac
+     3661 agggggtcat gtccatggtt cggggtaagc caaatttaca tcgagtgtgg gcttcattga
+     3721 ggagagggcg ttacgatacc cgttaaatga aaacccggac agtctctaac tgataggcct
+     3781 gataatcgcc aaatgaagtc gcaattagca gtacatgact ggcagatatg tcgccggaga
+     3841 cggtatgggg gacctatcct aggttggcac gcgagcgcga atgacgccta tcttatcccc
+     3901 ctgcacgtga tggtatcgtc ccaactatct tttacctcat caacgttttc ctgcataatc
+     3961 tgcaagatgg agagtccgcg agtgcgggga gtacgagatc acaaatctgc cctgaagaca
+     4021 aagctcgcag gccgtactca ggaaatagca tcgactcaca catatcggga acggcaaaga
+     4081 gtgcatcggc caatgcaaac tattgaacgt ccatgaaatt gtgtcaaact actagtgtgt
+     4141 ggacttgcgt caaggccatg gcgcaatact caaagccccg gtatttatcc cccgcagagt
+     4201 atccgtgcgg atggagttcc acagctcttt ggacatgcaa tgcgtggcgc tacatgctcc
+     4261 gctgatacag aatatctaat gtctcgcctc ttgccgtcga ccctacaact actgcacggg
+     4321 cagagtggac gcgacccctg agcggtgcag aaccttagta taaggcaagg gtggcacggc
+     4381 cgagccgcac ttgctcctac taggccgtgc tcgaagctat tgatgcaagc acagtattcc
+     4441 cgatttgtaa agcaaggtgc ccgtagccat acacccagct actcaccggc caatttcgac
+     4501 cctctctatc tcagacctcc gcatattccc aaactcctgc tcaagtatga aatgaccggc
+     4561 tcctcctaag gcctgcggac atggagtcat gcgtggaatg ccgtgtaggt agggtacaca
+     4621 cagccttacc atgtagggca ataaattata gactactgac attgattcct tgagggcccg
+     4681 ttcacttgtg ggggaaccag gaaggcgccg atagtcatca cttaaacaca tgcgacgcat
+     4741 ccatttcaag aaagacacgc tacgggtcta caccgcctat agttctaatt tgggccccgg
+     4801 tacgcacatc gatgtactct ccattacagc atagcacatc agcggcccta gttagcgctt
+     4861 ctttttgttc caacattcaa tagcggggac tgcattatcc tcaccctatt tgttgcatag
+     4921 gtatttggcc gtatacttgg gaaagagcaa ccacgggagt gcactagaaa ctgattcacc
+     4981 catgttataa cgcgttgctc gcaagtcgta ctgtggccac gcacaggtca ggcaatcgca
+     5041 accatgtctt agcagtttgt aagaagacct ttaaacatgt acctcacagc aatctcggaa
+     5101 cttttaattt tcctgagtca atgacatgct agctccgtcc acttgtaatc accgtcataa
+     5161 cacagttagc ctgcaaaagg gcgtgtacac cttgccactt taaagctgac cgaataacct
+     5221 acctacagga gatgcttagt gccacggaat gatctcgcaa tgcttagtct tacacccagt
+     5281 gaatcaaccc aagacctcgc cgactgaacg gtattgagtc caatcccgag aggcaattta
+     5341 tggccgttag tgacagtcgg tcgctgatag aataaggcag actcgtctta agcgggctgc
+     5401 tttaagagaa aatggagccc tgacgaagaa gtggatgaac caggttttga caacgtccca
+     5461 tattggtaat gtaggctcgt tatcaagaga taggtttaga aggctcaatg ctcgacgtaa
+     5521 aagaagtctt aagctctatg agccagtgat gagagctaat tatagggcgc attcgttggg
+     5581 gtaaggttgc gaattgtcat ttaactaaaa ccgacggcaa tggtttcacc ggagctgaga
+     5641 tcgcattaaa gtcacactac gaattatttg tccccgcggc tccagagaca aatttctagg
+     5701 agtgggttca tggagaaccg tgacaagcat ggtagcttca aatagcgtca tcggatctta
+     5761 aagtgattgt gacatatatg ggattgcgcg tctctcttac acaagctagt gtgcgcgagg
+     5821 tgctgaacac ctattacgtc aactcccggg atcccggcgg gttacagaga cataagcagg
+     5881 gtgtccatca ttaacttcga tgttgagccc gtgccctgat caaacacctc tcgtagtagt
+     5941 gggtgccggc cgtgtattat tttgggggag aggatgcgcc ctaagcaatt tctttccatc
+     6001 ggccagccat tcgacgccgg cacgcaagtt gttgcgggca ctgttgcagt tcccgtacta
+     6061 gagtctcaag tctagaggta ccagcatcag gaagatgggt acttcgtgtg gatcttctcc
+     6121 tgaacctgaa acctgaagag ctaaagcgcg tcgcgctgcc atacgataag tcgctctcat
+     6181 ttccggaaga cgtcgttggg tgatggcgaa caatcgcgaa acgaaaatcg cggtcggtat
+     6241 gttgattcaa gacgggctac gggcgggtta ctaacaggtg cgcagaaatg tgatgggtca
+     6301 cttgaccatg aactttcgcg ccgtcgcttc tgtggactgg ccggctccct gatagtgcac
+     6361 tagcccgttg atatgcccat taccatttgg cggcgcagtg tgccagcggg attaagatgc
+     6421 gtggcgtaca actatccgca ctttgctgac gcacaaaggc aactgatgga cagccttcgg
+     6481 gcattcgact ggttggctga gttcgcctgc ctattaatat gcttgtggaa attgatttac
+     6541 agcgcctact tctacttagg tgtacctatt tacggcacag ggataaaggc tgacagaaaa
+     6601 gtcctggaca ggtcataggt agttgtcaga cctacaatgg tataacttga gagtcctgta
+     6661 ccgcacatgc ggttgtagct agatgtccag aagaccgtag ctagcgacga gtgggttgca
+     6721 cgcgcatttt gggaaggggc tgcgcgaggg tggggtcacg ggttattcca tttctaaatg
+     6781 ctaaaccagc agttgcttta gttctgacct agcaggcatg tcatatgtat ggctagatta
+     6841 ttagtacaat gcaggactaa gaaagcctga gacttaaatg cgttggtttt tcagccgacg
+     6901 ggccgggagg gcagatggcc gaatgcgcac tgaggagtgc attgcgaggg aataggcgga
+     6961 ccaccaggtc ccctcacata ctgtggataa acctacccag ggacaactca cgccatcatt
+     7021 ttcaagagta gcactacttt ccactaagta cggtttgtcg agagccggtg gcaccgtgcg
+     7081 acgagcttgt gggcactagg cgaaccgggt tatataggac tgccttgcgg tgcgggaata
+     7141 ctttaccccg tggagaggcc ataaaagctt acatttattg tagccgctag cggtttcgac
+     7201 gcgctcaagt ggggctttat cttagagtat caaataatgc cctctcagct tcatcttgat
+     7261 ttttgtgttt ggggtagtgt atccgatggg tcaccttctt gaccttgggg agctccatcc
+     7321 atcgtaccaa tactccgttt ctttgtgttg cctaccgagt aatcgaatac cgcacgaggg
+     7381 ctagaatcta atttaaggtg ggtcttatcc ctgttgtttg gacctaacgc tgtaacaaat
+     7441 cacttccgcg acgggtgtca ttacgtcttc tatccgccac cggttcaaca gtgcgtcgaa
+     7501 tgccaagtcc ctattacccg cattgtaaag ccattacaat acctccggtg atataattga
+     7561 ttgccggttg gcaagggatc atctgtacgg gccgcgattg attgctgata aggaacggcg
+     7621 gtaaggaacg tatcgcgtac gaggttgtac actggaaccg ctaaacaagc ggtatcgcta
+     7681 aattaccggc gattatatca agggaatctt aggtagcacg aagccctacg ccctggaaac
+     7741 aggatcggcg cgaggccgtg gacatattag cctacgtttt tttacaccca gatttccgac
+     7801 gatgtccaca gctaaggcta tcctaaaccg caaacacata taaccgcagt ataaagcacg
+     7861 ggatgattcc ttggccatct tgcaagcagt gcaaggcaat tctggtgata ggggcaaggc
+     7921 agtgaaccga gtggtcagcg tattgtgacc ctgcaattgt catggcagat aattgtttat
+     7981 gaacctgttt cacacaccca tcccttggat ctccagcgta gttactaata gtacgatttc
+     8041 ctggtgttct gtcacccgcc ttgctgcctt cacgcctgcc ccacgttttg ctgtccactg
+     8101 aatatcgctc taattaatag gtgtcacact gtatcaggta agtccattcc gggtgctatt
+     8161 ggatcattcc tgagatgtac caccgatccc ataggcgtta ggtcttacat ctggagtgaa
+     8221 aaagatcagc atcgaactat aggtagataa aggtcatgac tgttaacaga gaatcgttcc
+     8281 tatcgcaacc ttcactaact ggaaggcacc cccacacttt gattagtaag cccctagcga
+     8341 atgtagtgat ccaagaacat cgagtatact ttagctctcg gttcaggcat gtatgcaatc
+     8401 gaccaccctt ccgttcagag tactctcaac cagcagattt ctaaacttta tagcctccgc
+     8461 ccactaaaat tgccttatct caggttgact cttggatgta gctgtaatct aacatacaca
+     8521 tggagctgcg gcaaattatc gtacgtccaa accaccaccg gatcagtggc gatactattc
+     8581 tcgcaaaaaa gccatccagc attggaacaa gtgttaacca gcatttttct gagtcccccg
+     8641 gaaagaaagt tgactacact acatccataa atgctagagt gtggattcgc catgtgttac
+     8701 aacggtcaac cgaaaggtta gcatgatact tcgttgttca atcggacgtt cgagcgccct
+     8761 ccctgtttat cacttgatcc cccttttgaa acatgtgcgc tgcgacgcag ggctgggaga
+     8821 gtcaccggaa accaaaagcc cgacctcgga cgtgtagggc cctccgtttg ccatcaatgg
+     8881 cgatgtagga ttctctttta atacaacgtt cactcaatta acgtcttggt ataagcgtcg
+     8941 aacgtgaccg aggttgacac cagtgtcacg gctgcgccgg ggtttgttgc tccgcgtgta
+     9001 cagggtattg gttcgatggt gcctcctcta cgtagatcta ctggataacc gtccccaata
+     9061 tccgcttccc aacgtagatt gccgacaggc ataagcttcg ggggcgcaaa ggccgacgtc
+     9121 cgcattgcag tgtagctttg tgagcaggaa gtgtgatagt ctttcgatta ttaaagtctg
+     9181 agctgaatga aaaaaggtcc aacgaatgga ggacgcgaag acatgggtgt ctcttatggc
+     9241 ccgagcggga gtaatggcgg ttcgtacata aaggctgaaa ggattctggc gttagctgtc
+     9301 ttacgttgga ttggcccttc aaattatcga tgttagctga ttcggtgtac cgggcgagga
+     9361 aagcgctctc agaacaactt catatacgag gttcgactat aatggtctaa gctcctgggc
+     9421 tagtctcaag aagcgggtac ctttagtagc acgtatcgac ggcaaagcaa agaataaaaa
+     9481 cttggctttg catcgtgcaa agatttctaa ctaggttgtt taagggctgg tatctatgtc
+     9541 ccgctataac agcgcgccta cagtagaagt ttaaccatga catacctttg aagtgttcgt
+     9601 atcacacaca aggaaggagc atgtggacac cactgagctt tgatcagcac gcgtctcaga
+     9661 gtttcagggg gacccaaatt actggtcctc aattgggacg cgaccgcatc tccccacgaa
+     9721 agcttatggg gattgcccac tgcccagctt caaatctgaa ggttcggctt attgacaggg
+     9781 tctaacacgc agctcaactg ctcgaggtta gaggcgtaat gacgggcccc gatagccttc
+     9841 tacgattacg tccagcagga accccacagc ttttccctac gtctaacacc gtgaaagcaa
+     9901 aactgtctgc ccttttacat ggtctttaag gaatctctgc acttatgtta ttaggtaagc
+     9961 tcccataaga gcaccacttc gtgtaccttg ctaactccct tcatccccac ccgcgaaaac
+    10021 ttaagacgtc acccctgtta ttatcccgtg cactcctaaa gtgcgatggg caagaacgca
+    10081 aacaattgtc tgagatttat atgggcggcg gacatagtca gagagcctta tataatctcc
+    10141 cacgtcttgc cagtccgagt tatgagaaac ccgggaccga tgacgctatt acggtcgccc
+    10201 agcgaggttc aacagagcga ggcataggag tcattacgcg tgttagcttc aacatgcgtg
+    10261 gaagtgaaac ggatctataa aacggcgtgg agtcatcagc ttgagcagat ctaacttact
+    10321 cgccacgcgc gcaaatcgtc tttcgctgtc cacgttatac gtaact
+//
--- /dev/null	Thu Jan 01 00:00:00 1970 +0000
+++ b/test-data/init/2-step-golden_gate_plan_simulation/construct_3/provided_parts_records/part_J.gb	Fri May 16 11:32:06 2025 +0000
@@ -0,0 +1,196 @@
+LOCUS       part_J                  4380 bp    DNA     circular UNK 31-OCT-2019
+DEFINITION  .
+ACCESSION   part_J
+VERSION     part_J
+KEYWORDS    "Source" "Sequence" "Freezer" "Shelf" "Box" "Concentration" "Use"
+            "creator:SynthSys Center" "marker:SmR".
+SOURCE
+  ORGANISM  .
+            .
+FEATURES             Location/Qualifiers
+     rep_origin      join(4298..4380,1..166)
+                     /label="feature"
+                     /ApEinfo_fwdcolor="#ffef86"
+     promoter        1442..1476
+                     /label="another feature"
+                     /ApEinfo_fwdcolor="#85dae9"
+     misc_feature    2345..2362
+                     /label="yet another feature"
+                     /ApEinfo_fwdcolor="#b4abac"
+     CDS             complement(2550..3341)
+                     /label="feature"
+                     /ApEinfo_fwdcolor="#b7e6d7"
+     misc_feature    1187..1210
+                     /label="another feature"
+                     /ApEinfo_fwdcolor="#b4abac"
+     misc_feature    1366..1396
+                     /label="yet another feature"
+                     /ApEinfo_fwdcolor="#b4abac"
+     CDS             complement(2550..3455)
+                     /label="feature"
+                     /ApEinfo_fwdcolor="#993366"
+     misc_feature    2421..2449
+                     /label="another feature"
+                     /ApEinfo_fwdcolor="#b4abac"
+     -35_signal      3766..3771
+                     /label="yet another feature"
+                     /ApEinfo_fwdcolor="#b4abac"
+     CDS             167..1186
+                     /label="feature"
+                     /ApEinfo_fwdcolor="#993366"
+     misc_feature    2526..2549
+                     /label="another feature"
+                     /ApEinfo_fwdcolor="#b4abac"
+     gene            167..1186
+                     /label="yet another feature"
+                     /ApEinfo_fwdcolor="#b4abac"
+     -10_signal      3744..3749
+                     /label="feature"
+                     /ApEinfo_fwdcolor="#b4abac"
+     CDS             1503..2222
+                     /label="another feature"
+                     /ApEinfo_fwdcolor="#ffef86"
+     misc_feature    1409..1426
+                     /label="yet another feature"
+                     /ApEinfo_fwdcolor="#b4abac"
+     -35_signal      3589..3594
+                     /label="feature"
+                     /ApEinfo_fwdcolor="#b4abac"
+     terminator      2227..2298
+                     /label="another feature"
+                     /ApEinfo_fwdcolor="#c6c9d1"
+     misc_feature    1319..1343
+                     /label="yet another feature"
+                     /ApEinfo_fwdcolor="#b4abac"
+     misc_feature    1370..1394
+                     /label="feature"
+                     /ApEinfo_fwdcolor="#f8d3a9"
+     misc_RNA        3625..4177
+                     /label="another feature"
+                     /ApEinfo_fwdcolor="#b4abac"
+     terminator      2314..2341
+                     /label="yet another feature"
+                     /ApEinfo_fwdcolor="#c6c9d1"
+     misc_feature    2364..2474
+                     /label="feature"
+                     /ApEinfo_fwdcolor="#b4abac"
+     misc_RNA        complement(3628..3735)
+                     /label="another feature"
+                     /ApEinfo_fwdcolor="#b4abac"
+     misc_feature    4264..4272
+                     /label="yet another feature"
+                     /ApEinfo_fwdcolor="#b4abac"
+     RBS             1485..1496
+                     /label="feature"
+                     /ApEinfo_fwdcolor="#ffef86"
+     misc_feature    2353..2356
+                     /label="another feature"
+                     /ApEinfo_fwdcolor="#ff0000"
+     misc_feature    complement(2476..2516)
+                     /label="yet another feature"
+                     /ApEinfo_fwdcolor="#c6c9d1"
+     misc_feature    3539..3562
+                     /label="feature"
+                     /ApEinfo_fwdcolor="#b4abac"
+     misc_feature    1427..1430
+                     /label="another feature"
+                     /ApEinfo_fwdcolor="#ff0000"
+     -10_signal      3610..3615
+                     /label="yet another feature"
+                     /ApEinfo_fwdcolor="#b4abac"
+     misc_feature    1211..1258
+                     /label="feature"
+                     /ApEinfo_fwdcolor="#c6c9d1"
+     gene            complement(2550..3455)
+                     /label="another feature"
+                     /ApEinfo_fwdcolor="#b4abac"
+     rep_origin      3589..4177
+                     /label="yet another feature"
+                     /ApEinfo_fwdcolor="#ffef86"
+     misc_feature    1414..1419
+                     /label="feature"
+                     /ApEinfo_fwdcolor="#84b0dc"
+     misc_feature    2388..2411
+                     /label="another feature"
+                     /ApEinfo_fwdcolor="#b4abac"
+     terminator      1409..1411
+                     /label="yet another feature"
+                     /ApEinfo_fwdcolor="#c6c9d1"
+     misc_feature    2357..2362
+                     /label="feature"
+                     /ApEinfo_fwdcolor="#84b0dc"
+ORIGIN
+        1 ctcatgggag tgtagcgcta gccatagttg acctgtcagc cggtcaaggt tggtccgaac
+       61 ctagccagtt agacgaccag ctcccccact attgcacagt gcctgtataa gcacgtcagt
+      121 gtctggcacc actgtgcgcg gtgtggtcct cgggacgatc ttcctacggc tacccatgcg
+      181 ctagtgatta cagacgatcg ttttttcttt ttctgtggtg caaatacaca agatacgtca
+      241 agagtcctag cagcctcatc ttgccaattg caggggtacc gattcaccca tggtatcagt
+      301 cacgcaaaaa aagacgacat cggagttgct ggcgactggc aaaagaaaac atctatctgc
+      361 cgtggcgttc gtctagcgca gcgagccgac tgactactcc gttatctcaa atttagtttc
+      421 gtaagatctt cacgggagcc ggccagctga agaatctata ggtctaccgc tagaggaagc
+      481 ccgtttacaa ccgacgtact agtccgacag caatcgtcag catgccaatt tattgtatca
+      541 ggttgagaat gcaccactac ggaatcgacg tgccactggc cgcacgatac tagtgcgctg
+      601 gtaaacaggc caggagctct aaatctggag tggtgtgaat ttaaccgcgg aacgattgtt
+      661 gcacgcggtc cctgtgactc tgttgggagc actgtccccg gctccggata agtgatgtga
+      721 acgaaaaggt gggctgacca gagatagggt taaggacggg cgatcgtagt ggacgattac
+      781 tgctgatctt ccgagcactc tgagtcgcgc ggcgtatcgg gagttacccc gctcgctaca
+      841 catctgaatt ccgccggata ctatgggtgc agagtggatc accttttcgt gacccgtata
+      901 ttcgtcgttc tcatcactgt cctccgcgat ttatttcaat cgtcggtttc gccagatgca
+      961 ttcctgggga agtcatcgcg acagtgcgct gcgcgcacag ctcttcttgg tttattcgag
+     1021 attgtggttt atcaacatgg tctatctacg gactgattag aatattccca cgttaagccg
+     1081 acgtgcattg gtactggctc cttaattaag cgcagagggt aggcgccttt tcttgtgcaa
+     1141 accattatat gaggaactag caaacactat ggcgcaatat gtccacgtga ctcgagcatt
+     1201 ctgtgttgcg gtagcgattt cactagtcac aaacggatag attctacggc gcacccggtg
+     1261 catcgttgta tgttcagcaa tttggtcata tcccgctcct ctattcaatc tcttttttcg
+     1321 tcaggggggg cacatacttg gagcagctgc gcctaacatt acaataagca gtcggagctc
+     1381 agtacaaaac ccttatctta gcggtccgtt ctggaattcg gtctcaggag atatgcaggt
+     1441 gtttacggct aggcacttac gcgaaatttc agctcgcggc aaactgtgct tatgcgactt
+     1501 cagctagtcg tcatcgagtg ctgacgcgct tgttctacct taaggtgccc gctatcgcat
+     1561 tgtccagggt tcggctatga gggtcggaac cagatcgcac ctacatgatg tcacgatact
+     1621 attattcacg tcgttagaga acggacggtc cttcgtcctc acaggaaaat tattagaaat
+     1681 ggtcaaccgg gtccacaaac gggcaattgc cactttggta gtacggttgc acataagatg
+     1741 atatttacgc cttctgcgtt caggttacga tagtcgttga tggggctcgc tccgggtgaa
+     1801 gttgatccag taaaatgggc gtcgatactt ctcctgtgag ctaagcgtct aaattcattc
+     1861 ctagtctcgt gacgagaaca gaaaagacta aaccacgcgt gatggacctt ggtaagcgct
+     1921 tgtcggtcta acttgtctca tctcacacgg tatgttcttg tgagcgctga ccagcccgtg
+     1981 tccctgacgg ggaattcatt ctaacttacg gcttgggcgt cgtgatgttt cggaatccag
+     2041 gatattacac agtagatgta gcttgtggcc gaacgagtgt atttcctgcg tcggattacc
+     2101 tcatttcttg ttaatctgcc tacaattaag ccctttcagc agccttccct ctcgtttata
+     2161 tttcgacagt caccgtgaca gtgtgatcga gctgtgggaa aatcacaata tagacgttag
+     2221 ttgcttcgac agaaacggcg aatgtacgcg gttgtgatgg atgagacagg ccattcaatt
+     2281 ctattcagcg aagttcagat tggttgctac tgctaaagga tgcgcatttg tcctttctgc
+     2341 gcacctgcat atacccctaa gatgccagcg caatacggca tcgcagggca agcaacaccg
+     2401 cacagcatgt ccctaaaggg aagatttaat acggactcag tcaagttgtg agaaacgaca
+     2461 atacattgag tggaatgccc tttggtacgt tggcgataga tctaacgaga aacttcaacg
+     2521 agatctagag tatcggactg agatgcatca tggctaggga ttgctgaatg gatatctttg
+     2581 ccaaaatgag ctcgactagg aatctcagac tgccagctac gaaaagctgg gggatattca
+     2641 tttccgctct tgtaaggcgc acgatgaccc tgtggagcaa aattcgacgc ggcaacgtag
+     2701 tcaaagtacg gcctatctgg gacggagatg ggattgtttc tgtattcatg ccggcctctt
+     2761 gagattgtaa ggatacccgg ccacagtctc gtaagaaacc cgatatcgct caaacgaatt
+     2821 gacatcagtt agggcttgcg ctctagcaac cacgcgtcgg gtgttcgact gaatttaaga
+     2881 tccagcgcaa accattcctt aaaggcggtc caggtgaaac cggctctgat aatgtacagt
+     2941 ggattgtcca gttcgcttca aagtgcaatc aggcaaggta ctggcaagtc accgcttggg
+     3001 gccggtttca gtggagcttt atcgacaaaa ggccgggccc tttggcctag agctcacttt
+     3061 tggtgtcgtt cacgagtgag aactttggct cgcagcttga atgcttgtca cgtttagggt
+     3121 tatacaacgt ttctataaac tacctatgac aaatcccgat cttctgaaac tccataagga
+     3181 ctaagagagt ccgcgacagt ttcacttggt cggtgctatt gactatgtca cgcatgcccg
+     3241 gtaaagcttt taagcaaagc ctgatatatc acgggaggtt actcaaagca ttttctaaag
+     3301 ggacagcgga ctcacattag cctaatataa acccgatcag gccatgcacc tcgattcacc
+     3361 ggaaggtagt accatgcacc ggatatttgg gacaacagtg aatagtacat cgtaaaatgt
+     3421 caaggcctag ctatttttca ctggtgtctt atctctatta caacacacac ggatgtcccg
+     3481 agcctacact ttcaaatata ctcaaggttc gctgttaagg gtaatacaag agtgctcggt
+     3541 ttagtatcca tatgttggta caagtgactg tgctagccgt aaattaattc ggcttccatt
+     3601 ccagcttggg tgtttagggt ctagacggtt gaaaccagaa agagtacaga caaaaccgta
+     3661 gctctcccaa ggttgatcct ccagacacct acccacacta gtagcgcagg cctagaggag
+     3721 acgttaggag cggaattgta cattcagtat cgcattaagc acaaagacag acaaacctag
+     3781 aagccactta tcccctcgta ggagtacaac ggcagcgctt tcgggaggag ttgcctaact
+     3841 acgctctgga cagcaagtcc cagaatgaag aaaatgactt ggcgagaacc caccactaca
+     3901 tgcagggtct tgggaccggt cagcacagct tatccatgcg gcaattccgg acgaccgcga
+     3961 atgaggatca cgacactgcc gatgttgcac cattgacctt ctcctatgca acaagggctt
+     4021 aagatggtag atggtaatag agtagcctgc gaccttatgc ggtaatacac aaaaaccggt
+     4081 aaacagtgcg ttgatgctgt gtgctggcgc atttgtgtac cttgctgggc tcgtataaaa
+     4141 ttctgtcagc aggacgttca cctcccttct gctagtcgct aggcacaaac ggaaaaggtc
+     4201 taatcgcgcg cgtgctcgtt agagtactgg ggcctcccac cacggatgat cacctcgccg
+     4261 atacatttgg ccttatgtct caataagacc tcatggtcta tcctacacca tagatttgga
+     4321 aagtctagtt gctgcctagc aggctgatag caagcgtcgt acgaggatcg aggaagggca
+//
--- /dev/null	Thu Jan 01 00:00:00 1970 +0000
+++ b/test-data/init/2-step-golden_gate_plan_simulation/construct_3/provided_parts_records/part_K.gb	Fri May 16 11:32:06 2025 +0000
@@ -0,0 +1,108 @@
+LOCUS       part_K                  3634 bp    DNA     circular UNK 28-OCT-2019
+DEFINITION  .
+ACCESSION   part_K
+VERSION     part_K
+KEYWORDS    "creator:SynthSys Center" "marker:KanR, BlpR".
+SOURCE
+  ORGANISM  .
+            .
+FEATURES             Location/Qualifiers
+     misc_feature    1268..1284
+                     /label="feature"
+                     /ApEinfo_fwdcolor="#b4abac"
+     CDS             complement(join(3199..3634,1..380))
+                     /label="another feature"
+                     /ApEinfo_fwdcolor="#b7e6d7"
+     misc_feature    2374..2377
+                     /label="yet another feature"
+                     /ApEinfo_fwdcolor="#faac61"
+     misc_feature    2395..2419
+                     /label="feature"
+                     /ApEinfo_fwdcolor="#f8d3a9"
+     promoter        1382..1560
+                     /label="another feature"
+                     /ApEinfo_fwdcolor="#c6c9d1"
+     misc_feature    2370..2373
+                     /label="yet another feature"
+                     /ApEinfo_fwdcolor="#ff0000"
+     misc_feature    2389..2393
+                     /label="feature"
+                     /ApEinfo_fwdcolor="#84b0dc"
+     misc_feature    1239..1261
+                     /label="another feature"
+                     /ApEinfo_fwdcolor="#f8d3a9"
+     rep_origin      complement(2510..3098)
+                     /label="yet another feature"
+                     /ApEinfo_fwdcolor="#ffef86"
+     terminator      2117..2369
+                     /label="feature"
+                     /ApEinfo_fwdcolor="#c6c9d1"
+     CDS             1562..2112
+                     /label="another feature"
+                     /ApEinfo_fwdcolor="#b7e6d7"
+     rep_origin      671..1106
+                     /label="yet another feature"
+                     /ApEinfo_fwdcolor="#ffef86"
+ORIGIN
+        1 accagacagc ttccctgctg cttagagtgc catggggaat tgatctgtgt tcaatgactt
+       61 taccataagc gcgcatcgtc attgcatcac gtgctttatc tctcgtagct agtagggaac
+      121 aagagtttgc gaccactggt ggaatttcta gccgctatgt gaaaagtcac tagtagtatt
+      181 aatagtcggc acatcgcgta cgcagtgctg agattcccct cactgttact tgagctagtc
+      241 gcgccttgac agaccgcctt tcgaaggtgg cagagtgcct aatatattgc cacgttgagc
+      301 gtactccttc ccggagtttc atcttaccgc cgggcgcgcg aagctacgtt tttcgaattt
+      361 actaacgcac gctgacggtg gaagggcgat tggactggtt agattcaggt atgccttaag
+      421 cgtactttac aaccagaggc tttatttgat tgtctaatct tcgtcaaaga acgaatacca
+      481 gcgcttgagg ggtgactaga ctaataggag acaccgtctg tatcactcgt cggctatggc
+      541 cgtactgtga acgcgacggg ccctaccagg ccacagattc ctatgtacgt tgcaagggtg
+      601 ggctttgacc gttgcaacgg cgcactaggt ggcattcttc tctgctgcca atgatccgcc
+      661 tcgccgagct aggggcgaag caggttatga cgcagcggaa cggtagtact atctaatatc
+      721 aactaaaatt gtttctcaaa ggttcaaact agtattcttt attagaaacg atgatggcat
+      781 ccggaacagg gttatggccc aggtgctgga tgaagccttg cctcgaggga cttagtcgcg
+      841 tcgcccctct accaaggcgc taacggctag cgagatggtt gaggcgggag ccccgccact
+      901 ttctagttga attcagagct acgtatcctg atgctaatcc ctcgaagaac tttccgatgc
+      961 agctactatc tctttcgtaa agttagaata ggaacccggt aacggtggaa cgtcccgtca
+     1021 taggaggttg tctcctacac tatctaagta cgtcagaaga tcgatttcct cagccgctga
+     1081 ccccgtccgg catgaccagc gccgaacgta taggccgtat tgctgccgga acgactgctt
+     1141 caaaggtaac catagccgtg gtacagtgac aacccactta gctattaaat catgcgcact
+     1201 ctagacctct tgcacatacg gagcaactat gtatctaatt ggcacgagac atagaggagg
+     1261 gccaatcaca gtagtttact ggtcgaattc cacctgcata tggagagaca ctccttcatc
+     1321 aacagcagag gttacatacg tttaacctga ccgatggttg cccatcgaaa gcaaggaccc
+     1381 acgggtaggc agctgttgtt tgatatgctt ttgtccccgg aaggcgccga taaaattata
+     1441 cgccgtcccc cgcgtccgtt acgagcttcg tgatgttgcg ggctgaagtt ccctacgagt
+     1501 caataggcca actcgaatgg ctaaatggtt gcaacccaca ggctcaactt tgaaggtaat
+     1561 acgccaaaat ccaatatgct ctttcgggta gcgcataaaa ccttctgggg gccactgcag
+     1621 acagtcatgg aggactacgt gcaacactac gctctagagt gatgatgtgg cagtcaaccg
+     1681 agggctgtta agagaagtct gtgcacgaaa atcaatgagt cggtgtaatc ttcaccttcc
+     1741 tacaaaccaa ggcttgaggg cctcaatttc gagcaccact tcttgaccaa gccgttcgcc
+     1801 ggtataggag ttacgaattc gggtcgtctg ccgtctttga accatagata agtacctccc
+     1861 gagtcgggag aacacgaatc gcatcagaac tcatcgaagg gtgttacttt gcccatcggc
+     1921 atccccgaag attaattgca ttcgaaattt taacttcgag aatcatccgt gctaaccaac
+     1981 gtggacgagc tatgaacgtt tacgtgttca gtatctagga attgacacgt ctccgatagc
+     2041 gggagtcacg gcatgagtta cggcttttgt gaccagcgtc tgtgtaattt tattgacagt
+     2101 ttcatatata gtgtctcgtc ttgcctttga gattcacagg ctgtaagagg gatgccgtcg
+     2161 tgtatatgcc tgcagttaga gcttccttgt caggacgagc aactcactcc ttctggtgat
+     2221 gctttgctag catgtagctt cgggtacttg cggaaaagga cagcctacag tgtctgcggc
+     2281 ggtacgtcac taatatgaca tacgctgtgg acatcgtgaa gcggcgaatc gctccagatt
+     2341 gaggtttaca gagtactcca tagtcacaca actcagaata tgcaggtgct gcagtgaccg
+     2401 aatcctctca ggtcgcgctg gcggcccgtt tgagagtgct gaaagcgaag tttatccgca
+     2461 ccgtcatcca gtgcacctcc cccagagaat gattacttgt gaatgcggtt aacctgaggg
+     2521 ccgacgccgc gattaaattt ttaacgtgat gcacaagctg ggggcactct cccctggggt
+     2581 caggttataa ttttaaaccc actacggacc tggactgcaa gatgcttagt ccacgcgtct
+     2641 catagaccgt cggtctatag ccatgttcaa cgccgccagg ctgggcgcat aactgtatgt
+     2701 gactttgtcc acatccaagg cgacgatggc ggcagttggc cggagggctg gctgtcaagg
+     2761 ggccacgcgg atgaagggag ctcatacgca actatggagc gcggtatata gtataggatc
+     2821 cgccgggaca cgcgggaatc aagggacaaa ggagcagtca gcgtgaaatc tttacgggtg
+     2881 aagcgcgctc gtaccaccta gtcccgccta aggcccttgt gtcgtgcaac atcgctgggg
+     2941 cgacggatga caatatgatc aaggcccgag agctttgaat gtaagaggcg tattataaag
+     3001 cctaggtccg catgttgata cggggagcag cccatgcgca gtaggaaggt ccgaccaccc
+     3061 ttttctgagg tctactccaa cctccttgcc gagtgctctc cgctatctcc acgcatagca
+     3121 tactccgctt ctaacatctt cttcaaagca tacacgctac ttagcagagc aaatcgacac
+     3181 gcccatggag tggtccgctc aaaccgcgca attaagtata agctaatgtg acggaccgga
+     3241 cctacgattt cccccaactc gtggggatca gttgactcgt ctcagcttat gagacataat
+     3301 tacggtcata gggtacgcct atgcccctca gagatctcta ggtcatatgc cctatcgggt
+     3361 gctcggtgac cattgtctca tacaaagtca tatttggcag ggcttctatg gacgagtatt
+     3421 atgtgcccaa aagggaacgt ctgagttggg attcgcttct aaccaatact ctaatggtac
+     3481 ctaatttaat gtggtcgctg cgcaccccgc cgggtacaac tgctgagttc ctgagatcgg
+     3541 tacggcaaac atcttttatc cagacgaggg ttctggccag aattgatgtt cagatacgag
+     3601 aaggcatgtc atgtcacaag gattttggag aatt
+//
--- /dev/null	Thu Jan 01 00:00:00 1970 +0000
+++ b/test-data/init/2-step-golden_gate_plan_simulation/construct_3/provided_parts_records/part_L.gb	Fri May 16 11:32:06 2025 +0000
@@ -0,0 +1,79 @@
+LOCUS       part_L                  2267 bp    DNA     circular UNK 28-OCT-2019
+DEFINITION  .
+ACCESSION   part_L
+VERSION     part_L
+KEYWORDS    "creator:SynthSys Center" "marker:KanR".
+SOURCE
+  ORGANISM  .
+            .
+FEATURES             Location/Qualifiers
+     misc_feature    join(2263..2267,1)
+                     /label="feature"
+                     /ApEinfo_fwdcolor="#84b0dc"
+     terminator      2..59
+                     /label="another feature"
+                     /ApEinfo_fwdcolor="#c6c9d1"
+     CDS             complement(1140..1955)
+                     /label="yet another feature"
+                     /ApEinfo_fwdcolor="#b7e6d7"
+     misc_feature    2206..2209
+                     /label="feature"
+                     /ApEinfo_fwdcolor="#ff0000"
+     misc_feature    2202..2205
+                     /label="another feature"
+                     /ApEinfo_fwdcolor="#faac61"
+     terminator      2139..2182
+                     /label="yet another feature"
+                     /ApEinfo_fwdcolor="#c6c9d1"
+     rep_origin      complement(254..842)
+                     /label="feature"
+                     /ApEinfo_fwdcolor="#ffef86"
+     misc_feature    2248..2251
+                     /label="another feature"
+                     /ApEinfo_fwdcolor="#ff0000"
+     misc_feature    2185..2190
+                     /label="yet another feature"
+                     /ApEinfo_fwdcolor="#84b0dc"
+     terminator      1025..1119
+                     /label="feature"
+                     /ApEinfo_fwdcolor="#c6c9d1"
+ORIGIN
+        1 gtccgatgcg agcaccacct atagataccc taatcagcat ggtcccggtg accattacca
+       61 ccgacggcct tgttttaaac gaaggcgctc actatacaag aaactaatgt ctcccacaag
+      121 gctcagaccc agccggtgct ttcagcgctc cccgttggcg ccccccgaag accatagaga
+      181 ggtgctctgt taacaactat aatgaaaggg attattgagg gagtcggagg tgaattctga
+      241 agccttaccc ctacggtcgt ggtcatcatc acggatcgcg ataagcggcc ggtctgttac
+      301 ggacgccact acgaggaggg tttcttggca atcaaggcta cgcattacaa ccatcggggt
+      361 cggtctggct gaacaatctt gatgttcaac ctttgttacc ggctccttgt gttattatcc
+      421 ggtttttttg atctatatgt ttataaggaa gcggtgcaga ccgtagagaa ataccggcta
+      481 aggcagtcgc tcaatgcaca ccagcatcgc cgagacatat aaagccataa acattaattg
+      541 gaatgctagt cacagcgtgt tgactggacg cttaaaagtt tctacaaaag gtatagtttt
+      601 aacatttctc tgagttagcg ctatcgggtc gactgacatc tagaattgac acgttactca
+      661 cctggatcct agtcacactc cgggaaccgc tcgcttagtg gcagtagcgg ggggcgtccc
+      721 taggatagct gcgcaaagcg tggtttatct aatcgtggct tgtgtggaca tgatgctgtt
+      781 caggcgcatc tgtggccgcc acagcattac caagctaatc agaaaccgcg gcatgtcccc
+      841 gcgatgcgag aggcatctgt tagagccaaa gagtggaggt ctgtaatatc gctagcggag
+      901 attttctaag gggcgtggga ctttatcccg atatggctga acgatccaac ggcaaatggt
+      961 tctgccattg aactttaacc atgaatagac tccaggcgag ggataatgga aataatagca
+     1021 ggaaatgaca atctactagg tgcgcactat caagattgta tgtttgcgta tcgtagttct
+     1081 aatggtcttg tgtcccgtat tgggtcggac ggtgctgttc ctgatcgtag caatgcccgg
+     1141 ttagaatcac gcatcggagc gatcatttcg ggcgatacgc gttcgttctg tccactcttg
+     1201 tgggagtccg acgtatgcct gctcggtatt gttttattca ggcgacagta cctcccattc
+     1261 aaatatacag ggttatacta cacaccacga gtaataaaga cttgtgttgt gccaattcct
+     1321 cgtgggactg ccacgctcgt gagcttcgcg gttacatacc cctatgtccc caactgttgg
+     1381 tggcaaatcc ctaatctaat ctattgtatc acagtcggtc aacgactgaa attggggcaa
+     1441 caccaacagt gctcttacga tattcgtctg tgtctaacaa tccaacaaaa agctgttatt
+     1501 atgatggagg atcttggatt gcgtcagtac tacggtgttg tacgagaatt gcatgatgat
+     1561 tcctcgatgt cgagtccttg caagatcgtg atctatagcc aagctgctgc tgtagatcaa
+     1621 cctcaccggg gcgggggtcc cattactatg ggcggcatta gagtaccata gatgaacgcg
+     1681 agcagagaca tgtcaatgta tcccagtcct gcagtactac gtcagtctct gctcctgggg
+     1741 ccaatgcacg cctgtagaat agggccgtgt tcccatgaga aatttgaggg acttacgatt
+     1801 agatggcctt ggcaggggac tccgcgtacg tgtggggatg aaccggcacc ggccttggcc
+     1861 ctgagtaaat gtaagcgata tcaacttcgc tattcatgat cagtggtatt cgtgtaggca
+     1921 ccgaaagtcc cttggcgaaa gtagagacat acgatacgga ccgcaagcga gcagaatttc
+     1981 agcacatgac agttattagc ttttttctaa tggtgctccc attatgattg tcaagtcccg
+     2041 actgctagct gtaggatgaa acacatccac acacgtgtta ccatactgat tttgacacta
+     2101 cttcctaacc gggccgaatg gtatctgctg cgatgcttag ttacgtaaca gccgaatgtc
+     2161 acgccactgc atattgtggt tctggaattc cacctgcata tgtcacgcta gagaccgtat
+     2221 gaggtgggcg gatagtggtg acttcaaacc catatgcagg tgctgca
+//
--- /dev/null	Thu Jan 01 00:00:00 1970 +0000
+++ b/test-data/init/2-step-golden_gate_plan_simulation/construct_4/construct_4.gb	Fri May 16 11:32:06 2025 +0000
@@ -0,0 +1,350 @@
+LOCUS       construct_4             8074 bp    DNA     circular UNK 01-JAN-1980
+DEFINITION  .
+ACCESSION   construct_4
+VERSION     construct_4
+KEYWORDS    .
+SOURCE      .
+  ORGANISM  .
+            .
+FEATURES             Location/Qualifiers
+     homology        1..4
+                     /label="CAGA"
+                     /color="#f7e8f7"
+                     /ApEinfo_fwdcolor="#f7e8f7"
+     homology        5..8
+                     /label="GGAG"
+                     /color="#f7e8f7"
+                     /ApEinfo_fwdcolor="#f7e8f7"
+     misc_feature    9..1093
+                     /source="part_G"
+                     /indicates_part=True
+                     /note="From part_G"
+                     /color="white"
+                     /ApEinfo_fwdcolor="white"
+     homology        1094..1097
+                     /label="AATG"
+                     /color="#f7e8f7"
+                     /ApEinfo_fwdcolor="#f7e8f7"
+     misc_feature    1098..2746
+                     /source="part_H"
+                     /indicates_part=True
+                     /note="From part_H"
+                     /color="white"
+                     /ApEinfo_fwdcolor="white"
+     homology        2747..2750
+                     /label="GCTT"
+                     /color="#f7e8f7"
+                     /ApEinfo_fwdcolor="#f7e8f7"
+     misc_feature    2751..3085
+                     /label="feature"
+                     /ApEinfo_fwdcolor="#f8d3a9"
+     misc_feature    2751..3085
+                     /source="part_I"
+                     /indicates_part=True
+                     /note="From part_I"
+                     /color="white"
+                     /ApEinfo_fwdcolor="white"
+     homology        3086..3089
+                     /label="GGTA"
+                     /color="#f7e8f7"
+                     /ApEinfo_fwdcolor="#f7e8f7"
+     misc_feature    3090..3498
+                     /label="another feature"
+                     /ApEinfo_fwdcolor="#faac61"
+     primer_bind     complement(3387..3407)
+                     /label="yet another feature"
+                     /ApEinfo_fwdcolor="#85dae9"
+     misc_feature    3090..3498
+                     /source="part_F"
+                     /indicates_part=True
+                     /note="From part_F"
+                     /color="white"
+                     /ApEinfo_fwdcolor="white"
+     homology        3499..3502
+                     /label="CGCT"
+                     /color="#f7e8f7"
+                     /ApEinfo_fwdcolor="#f7e8f7"
+     misc_feature    3420^3421
+                     /source="part_A"
+                     /indicates_part=True
+                     /note="From part_A"
+                     /color="white"
+                     /ApEinfo_fwdcolor="white"
+     misc_feature    6918^6919
+                     /source="part_A"
+                     /indicates_part=True
+                     /note="From part_A"
+                     /color="white"
+                     /ApEinfo_fwdcolor="white"
+     misc_feature    5..3502
+                     /source="construct_2"
+                     /indicates_part=True
+                     /note="From construct_2"
+                     /color="white"
+                     /ApEinfo_fwdcolor="white"
+     homology        3503..3506
+                     /label="GTCA"
+                     /color="#f7e8f7"
+                     /ApEinfo_fwdcolor="#f7e8f7"
+     misc_feature    3507..3510
+                     /label="feature"
+                     /ApEinfo_fwdcolor="#ff0000"
+     misc_feature    3507..3548
+                     /source="part_L"
+                     /indicates_part=True
+                     /note="From part_L"
+                     /color="white"
+                     /ApEinfo_fwdcolor="white"
+     homology        3549..3552
+                     /label="ACCC"
+                     /color="#f7e8f7"
+                     /ApEinfo_fwdcolor="#f7e8f7"
+     CDS             complement(3746..4537)
+                     /label="feature"
+                     /ApEinfo_fwdcolor="#b7e6d7"
+     CDS             complement(3746..4651)
+                     /label="feature"
+                     /ApEinfo_fwdcolor="#993366"
+     misc_feature    3617..3645
+                     /label="another feature"
+                     /ApEinfo_fwdcolor="#b4abac"
+     -35_signal      4962..4967
+                     /label="yet another feature"
+                     /ApEinfo_fwdcolor="#b4abac"
+     misc_feature    3722..3745
+                     /label="another feature"
+                     /ApEinfo_fwdcolor="#b4abac"
+     -10_signal      4940..4945
+                     /label="feature"
+                     /ApEinfo_fwdcolor="#b4abac"
+     -35_signal      4785..4790
+                     /label="feature"
+                     /ApEinfo_fwdcolor="#b4abac"
+     misc_RNA        4821..5373
+                     /label="another feature"
+                     /ApEinfo_fwdcolor="#b4abac"
+     misc_feature    3560..3670
+                     /label="feature"
+                     /ApEinfo_fwdcolor="#b4abac"
+     misc_RNA        complement(4824..4931)
+                     /label="another feature"
+                     /ApEinfo_fwdcolor="#b4abac"
+     misc_feature    5460..5468
+                     /label="yet another feature"
+                     /ApEinfo_fwdcolor="#b4abac"
+     misc_feature    complement(3672..3712)
+                     /label="yet another feature"
+                     /ApEinfo_fwdcolor="#c6c9d1"
+     misc_feature    4735..4758
+                     /label="feature"
+                     /ApEinfo_fwdcolor="#b4abac"
+     -10_signal      4806..4811
+                     /label="yet another feature"
+                     /ApEinfo_fwdcolor="#b4abac"
+     gene            complement(3746..4651)
+                     /label="another feature"
+                     /ApEinfo_fwdcolor="#b4abac"
+     rep_origin      4785..5373
+                     /label="yet another feature"
+                     /ApEinfo_fwdcolor="#ffef86"
+     misc_feature    3584..3607
+                     /label="another feature"
+                     /ApEinfo_fwdcolor="#b4abac"
+     misc_feature    3553..3558
+                     /label="feature"
+                     /ApEinfo_fwdcolor="#84b0dc"
+     misc_feature    6763..6786
+                     /label="another feature"
+                     /ApEinfo_fwdcolor="#b4abac"
+     misc_feature    6942..6972
+                     /label="yet another feature"
+                     /ApEinfo_fwdcolor="#b4abac"
+     CDS             5743..6762
+                     /label="feature"
+                     /ApEinfo_fwdcolor="#993366"
+     gene            5743..6762
+                     /label="yet another feature"
+                     /ApEinfo_fwdcolor="#b4abac"
+     misc_feature    6985..7002
+                     /label="yet another feature"
+                     /ApEinfo_fwdcolor="#b4abac"
+     misc_feature    6895..6919
+                     /label="yet another feature"
+                     /ApEinfo_fwdcolor="#b4abac"
+     misc_feature    6946..6970
+                     /label="feature"
+                     /ApEinfo_fwdcolor="#f8d3a9"
+     misc_feature    6787..6834
+                     /label="feature"
+                     /ApEinfo_fwdcolor="#c6c9d1"
+     misc_feature    6990..6995
+                     /label="feature"
+                     /ApEinfo_fwdcolor="#84b0dc"
+     terminator      6985..6987
+                     /label="yet another feature"
+                     /ApEinfo_fwdcolor="#c6c9d1"
+     misc_feature    3553..7002
+                     /source="part_J"
+                     /indicates_part=True
+                     /note="From part_J"
+                     /color="white"
+                     /ApEinfo_fwdcolor="white"
+     homology        7003..7006
+                     /label="GGAG"
+                     /color="#f7e8f7"
+                     /ApEinfo_fwdcolor="#f7e8f7"
+     promoter        7083..7261
+                     /label="another feature"
+                     /ApEinfo_fwdcolor="#c6c9d1"
+     misc_feature    8071..8074
+                     /label="yet another feature"
+                     /ApEinfo_fwdcolor="#ff0000"
+     terminator      7818..8070
+                     /label="feature"
+                     /ApEinfo_fwdcolor="#c6c9d1"
+     CDS             7263..7813
+                     /label="another feature"
+                     /ApEinfo_fwdcolor="#b7e6d7"
+     misc_feature    7007..8074
+                     /source="part_K"
+                     /indicates_part=True
+                     /note="From part_K"
+                     /color="white"
+                     /ApEinfo_fwdcolor="white"
+ORIGIN
+        1 cagaggagga acttctatgg gacgaaagat gcgcagctcg acaaatctca aattggaaac
+       61 cgtctaaggt ctttgagccc acgctaggcc accgaatagt tgcgagctcg tgggcaattg
+      121 ctggctagcg gtttgtatcg tatacgtaac aagagattgc gccggattca ttcgtgtggg
+      181 gtgctttcac atcggaatac tcaagagtgg gggtttgcgc tttaatatga cggcctcatg
+      241 caccccaaaa ataagagcgc caatttcatc gaccacattc cggacaattc tgacttccct
+      301 gtcggatcga ccctcgctca caactcctag aactccaaga cggtaggacg tcagccgaaa
+      361 aggaggagtg acgacgggcc ctcctagctg aagcaatggg gggcgtcgac cctagcctgg
+      421 tgtgggactt cggagggtcg ggcgtgtggc cattcctgca cgaggggccc ttgcagtatc
+      481 gaactttgac gagaaagtgg ggggcgacct ataaacatag cggagttcaa tactcctgca
+      541 agtgcatgat gacgttcagc gttggcacat cgaacgcgtc gctacacttg ctcaccggaa
+      601 ggcaaaatag accggcagct ggcccgcacg gacgtctaga ctcctacgct gtcaaatgca
+      661 cgatgactat tagcatgcgg aattcgaggc ggccggtaca tcgagacacg ctggtcttaa
+      721 tacctgtgtt atgtcaaaac aagtgtctcg gcggctttgt actacgctgt gaatgcgcat
+      781 gatgttgcga gaagctgaac gttggtagca gtctacaaca gaaccgacga gctacggacg
+      841 ggttacagca ggatcccctc ttaaggcatt attcgacgac tccaggttct aaccgatcag
+      901 taattgcctc ggatggtcgt acgtgttaac cgagacagca aggcaccaca tagacaactg
+      961 catagggcgc ctacaggtcc acaatcaggg tggcccaaga tcctcaaaga cttgttgcag
+     1021 tctctgctta ttccgtttaa cacgttgtgt gagctctagc ttactacctc atcggtgtcg
+     1081 ggagtgattt aggaatggaa gacgcgttta gtcttcggcc cccagacggc accggcagag
+     1141 ccactgccaa tgccttttac gctgaactct tcgactttgg catgtgcgac tgactatacg
+     1201 ccgatggccc taccctgcag cggaaaggca cagggccaaa aacagtggaa gcgcaccgct
+     1261 agagctttac taaatccttt agggtgaacc ggtgttcagt caacagaaac atatgactag
+     1321 tccttaatgg cactactaaa ggcggcccat ctcttttgta ggtcacgtct catcgtttag
+     1381 caagcgtccg ccatccgagg agtatcctag tacgtgagag ggtgttttac ctcatcacat
+     1441 ggtttttggc tagatgtggc agatgccagc tgatacctta caacccgcta taacggtttc
+     1501 tggatcgacg atacaacctg cttcggcata tcataatggc ggcctcatag gacttccaat
+     1561 catggttatg cgagtttgat gtgttgaaga ttgtgagggg aaaccttttt ccgagtacgt
+     1621 tgaatctgcg actgatggtg aacaactcat cgagagggat gtgcgggcag tctccttgat
+     1681 gcgcgaaaag gagtcgcgac cgcgtgttcg tgacgcactt gatgctagac cgtaggggct
+     1741 cattatctcc tgaaacagta gctagctttt ggtgtccgag tcagcttagg cacagtaatt
+     1801 gaaaagaagg aaatgcgtga aaactaaacg tagacactcc ttgctaagaa ttccctggtc
+     1861 tttttcgagc atagactacc gtaggtaaaa ggcttgtcgt gtcacaaata gacttgatct
+     1921 gttcggcata tacacatcct actgcttcag taaccaagga cgattctccg gccattggac
+     1981 tgtgggacca cccgcgttca aacggaatcc tctacgaacg gttaagaaag gagcccactg
+     2041 cttgcggaga catatcgttg ctgagtggta caccggtgag tcaaaaagta ctgacactac
+     2101 tggtggactc tcgggtacga tgtgtggggt attggcatac tatggcgcta agcgtggaat
+     2161 agtgtttcca atagcccttt acctaagaag cattctgaca catgggttgg acttttacac
+     2221 agacctataa ctcgtatccg gcctggtgat gtatgtccgc ttatcactga atgcaggatt
+     2281 ccgccaattc cgctcgcggg ttctcggaca acgggccatg gagatggatc aatgagccat
+     2341 gttgattacc atttcactac acacggttag tcaattccgg agatcataat tcgacaattg
+     2401 aatatgcgtg atacgctttc tgttaccagg atcgttgcta attagtttcc aatgtcacag
+     2461 tgttgggcgg cgaggtatca cggcgctctg ggtagaatgg cggtgcctga ctggacctca
+     2521 taactggtaa catacctatg accaaaggag gtcagacacc gatgagtcgg tgacatgggc
+     2581 ggtcacagcg tgccctgcat agtaatacag ctcgtttcta gacatttgtc ctaattcgcc
+     2641 acacaagtac gagagcgggg gtaacccatc accatcgtgc ccgtaggtac ctaatcttca
+     2701 tcgagcgcta ttgttaaagt ggactcaggg atcggcatct cgtgtagctt ttattatccg
+     2761 gcatgcatgc ggcgttgcat cgcttcatcg tcatcgacat atcgttagcg ggacttatca
+     2821 gggtcccatc acggctgtga cagctgttca taagtgtaat agcagtcacc ccaccaaatg
+     2881 caagactgtt cccaaactaa gtgctaggga ggttggctac ctatcggcgt ggcagttgac
+     2941 cgggtttttc ttagtacctg ccttccaatc tccgataaaa gcaagatgac ttcctgcttg
+     3001 cgctaaagtc tgaattcgct aagggggcag attcattacc agagactgcc aaagtcaacc
+     3061 gccgaacgat actggaatat atggaggtaa gctcccataa gagcaccact tcgtgtacct
+     3121 tgctaactcc cttcatcccc acccgcgaaa acttaagacg tcacccctgt tattatcccg
+     3181 tgcactccta aagtgcgatg ggcaagaacg caaacaattg tctgagattt atatgggcgg
+     3241 cggacatagt cagagagcct tatataatct cccacgtctt gccagtccga gttatgagaa
+     3301 acccgggacc gatgacgcta ttacggtcgc ccagcgaggt tcaacagagc gaggcatagg
+     3361 agtcattacg cgtgttagct tcaacatgcg tggaagtgaa acggatctat aaaacggcgt
+     3421 ggagtcatca gcttgagcag atctaactta ctcgccacgc gcgcaaatcg tctttcgctg
+     3481 tccacgttat acgtaactcg ctgtcacgct agagaccgta tgaggtgggc ggatagtggt
+     3541 gacttcaaac ccctaagatg ccagcgcaat acggcatcgc agggcaagca acaccgcaca
+     3601 gcatgtccct aaagggaaga tttaatacgg actcagtcaa gttgtgagaa acgacaatac
+     3661 attgagtgga atgccctttg gtacgttggc gatagatcta acgagaaact tcaacgagat
+     3721 ctagagtatc ggactgagat gcatcatggc tagggattgc tgaatggata tctttgccaa
+     3781 aatgagctcg actaggaatc tcagactgcc agctacgaaa agctggggga tattcatttc
+     3841 cgctcttgta aggcgcacga tgaccctgtg gagcaaaatt cgacgcggca acgtagtcaa
+     3901 agtacggcct atctgggacg gagatgggat tgtttctgta ttcatgccgg cctcttgaga
+     3961 ttgtaaggat acccggccac agtctcgtaa gaaacccgat atcgctcaaa cgaattgaca
+     4021 tcagttaggg cttgcgctct agcaaccacg cgtcgggtgt tcgactgaat ttaagatcca
+     4081 gcgcaaacca ttccttaaag gcggtccagg tgaaaccggc tctgataatg tacagtggat
+     4141 tgtccagttc gcttcaaagt gcaatcaggc aaggtactgg caagtcaccg cttggggccg
+     4201 gtttcagtgg agctttatcg acaaaaggcc gggccctttg gcctagagct cacttttggt
+     4261 gtcgttcacg agtgagaact ttggctcgca gcttgaatgc ttgtcacgtt tagggttata
+     4321 caacgtttct ataaactacc tatgacaaat cccgatcttc tgaaactcca taaggactaa
+     4381 gagagtccgc gacagtttca cttggtcggt gctattgact atgtcacgca tgcccggtaa
+     4441 agcttttaag caaagcctga tatatcacgg gaggttactc aaagcatttt ctaaagggac
+     4501 agcggactca cattagccta atataaaccc gatcaggcca tgcacctcga ttcaccggaa
+     4561 ggtagtacca tgcaccggat atttgggaca acagtgaata gtacatcgta aaatgtcaag
+     4621 gcctagctat ttttcactgg tgtcttatct ctattacaac acacacggat gtcccgagcc
+     4681 tacactttca aatatactca aggttcgctg ttaagggtaa tacaagagtg ctcggtttag
+     4741 tatccatatg ttggtacaag tgactgtgct agccgtaaat taattcggct tccattccag
+     4801 cttgggtgtt tagggtctag acggttgaaa ccagaaagag tacagacaaa accgtagctc
+     4861 tcccaaggtt gatcctccag acacctaccc acactagtag cgcaggccta gaggagacgt
+     4921 taggagcgga attgtacatt cagtatcgca ttaagcacaa agacagacaa acctagaagc
+     4981 cacttatccc ctcgtaggag tacaacggca gcgctttcgg gaggagttgc ctaactacgc
+     5041 tctggacagc aagtcccaga atgaagaaaa tgacttggcg agaacccacc actacatgca
+     5101 gggtcttggg accggtcagc acagcttatc catgcggcaa ttccggacga ccgcgaatga
+     5161 ggatcacgac actgccgatg ttgcaccatt gaccttctcc tatgcaacaa gggcttaaga
+     5221 tggtagatgg taatagagta gcctgcgacc ttatgcggta atacacaaaa accggtaaac
+     5281 agtgcgttga tgctgtgtgc tggcgcattt gtgtaccttg ctgggctcgt ataaaattct
+     5341 gtcagcagga cgttcacctc ccttctgcta gtcgctaggc acaaacggaa aaggtctaat
+     5401 cgcgcgcgtg ctcgttagag tactggggcc tcccaccacg gatgatcacc tcgccgatac
+     5461 atttggcctt atgtctcaat aagacctcat ggtctatcct acaccataga tttggaaagt
+     5521 ctagttgctg cctagcaggc tgatagcaag cgtcgtacga ggatcgagga agggcactca
+     5581 tgggagtgta gcgctagcca tagttgacct gtcagccggt caaggttggt ccgaacctag
+     5641 ccagttagac gaccagctcc cccactattg cacagtgcct gtataagcac gtcagtgtct
+     5701 ggcaccactg tgcgcggtgt ggtcctcggg acgatcttcc tacggctacc catgcgctag
+     5761 tgattacaga cgatcgtttt ttctttttct gtggtgcaaa tacacaagat acgtcaagag
+     5821 tcctagcagc ctcatcttgc caattgcagg ggtaccgatt cacccatggt atcagtcacg
+     5881 caaaaaaaga cgacatcgga gttgctggcg actggcaaaa gaaaacatct atctgccgtg
+     5941 gcgttcgtct agcgcagcga gccgactgac tactccgtta tctcaaattt agtttcgtaa
+     6001 gatcttcacg ggagccggcc agctgaagaa tctataggtc taccgctaga ggaagcccgt
+     6061 ttacaaccga cgtactagtc cgacagcaat cgtcagcatg ccaatttatt gtatcaggtt
+     6121 gagaatgcac cactacggaa tcgacgtgcc actggccgca cgatactagt gcgctggtaa
+     6181 acaggccagg agctctaaat ctggagtggt gtgaatttaa ccgcggaacg attgttgcac
+     6241 gcggtccctg tgactctgtt gggagcactg tccccggctc cggataagtg atgtgaacga
+     6301 aaaggtgggc tgaccagaga tagggttaag gacgggcgat cgtagtggac gattactgct
+     6361 gatcttccga gcactctgag tcgcgcggcg tatcgggagt taccccgctc gctacacatc
+     6421 tgaattccgc cggatactat gggtgcagag tggatcacct tttcgtgacc cgtatattcg
+     6481 tcgttctcat cactgtcctc cgcgatttat ttcaatcgtc ggtttcgcca gatgcattcc
+     6541 tggggaagtc atcgcgacag tgcgctgcgc gcacagctct tcttggttta ttcgagattg
+     6601 tggtttatca acatggtcta tctacggact gattagaata ttcccacgtt aagccgacgt
+     6661 gcattggtac tggctcctta attaagcgca gagggtaggc gccttttctt gtgcaaacca
+     6721 ttatatgagg aactagcaaa cactatggcg caatatgtcc acgtgactcg agcattctgt
+     6781 gttgcggtag cgatttcact agtcacaaac ggatagattc tacggcgcac ccggtgcatc
+     6841 gttgtatgtt cagcaatttg gtcatatccc gctcctctat tcaatctctt ttttcgtcag
+     6901 ggggggcaca tacttggagc agctgcgcct aacattacaa taagcagtcg gagctcagta
+     6961 caaaaccctt atcttagcgg tccgttctgg aattcggtct caggagagac actccttcat
+     7021 caacagcaga ggttacatac gtttaacctg accgatggtt gcccatcgaa agcaaggacc
+     7081 cacgggtagg cagctgttgt ttgatatgct tttgtccccg gaaggcgccg ataaaattat
+     7141 acgccgtccc ccgcgtccgt tacgagcttc gtgatgttgc gggctgaagt tccctacgag
+     7201 tcaataggcc aactcgaatg gctaaatggt tgcaacccac aggctcaact ttgaaggtaa
+     7261 tacgccaaaa tccaatatgc tctttcgggt agcgcataaa accttctggg ggccactgca
+     7321 gacagtcatg gaggactacg tgcaacacta cgctctagag tgatgatgtg gcagtcaacc
+     7381 gagggctgtt aagagaagtc tgtgcacgaa aatcaatgag tcggtgtaat cttcaccttc
+     7441 ctacaaacca aggcttgagg gcctcaattt cgagcaccac ttcttgacca agccgttcgc
+     7501 cggtatagga gttacgaatt cgggtcgtct gccgtctttg aaccatagat aagtacctcc
+     7561 cgagtcggga gaacacgaat cgcatcagaa ctcatcgaag ggtgttactt tgcccatcgg
+     7621 catccccgaa gattaattgc attcgaaatt ttaacttcga gaatcatccg tgctaaccaa
+     7681 cgtggacgag ctatgaacgt ttacgtgttc agtatctagg aattgacacg tctccgatag
+     7741 cgggagtcac ggcatgagtt acggcttttg tgaccagcgt ctgtgtaatt ttattgacag
+     7801 tttcatatat agtgtctcgt cttgcctttg agattcacag gctgtaagag ggatgccgtc
+     7861 gtgtatatgc ctgcagttag agcttccttg tcaggacgag caactcactc cttctggtga
+     7921 tgctttgcta gcatgtagct tcgggtactt gcggaaaagg acagcctaca gtgtctgcgg
+     7981 cggtacgtca ctaatatgac atacgctgtg gacatcgtga agcggcgaat cgctccagat
+     8041 tgaggtttac agagtactcc atagtcacac aact
+//
Binary file test-data/init/2-step-golden_gate_plan_simulation/construct_4/construct_4.pdf has changed
--- /dev/null	Thu Jan 01 00:00:00 1970 +0000
+++ b/test-data/init/2-step-golden_gate_plan_simulation/construct_4/construct_4_summary.csv	Fri May 16 11:32:06 2025 +0000
@@ -0,0 +1,2 @@
+assembly_name,construct_id,assembly_level,construct_size,number_of_parts,depends_on,enzymes,used_in,parts
+construct_4,construct_4,2,8074,4,construct_2,AarI,,construct_2 & part_L & part_J & part_K
Binary file test-data/init/2-step-golden_gate_plan_simulation/construct_4/construct_4_type2s_mix_connections_graph.pdf has changed
Binary file test-data/init/2-step-golden_gate_plan_simulation/construct_4/construct_4_type2s_mix_parts_graph.pdf has changed
--- /dev/null	Thu Jan 01 00:00:00 1970 +0000
+++ b/test-data/init/2-step-golden_gate_plan_simulation/construct_4/provided_parts_records/construct_2.gb	Fri May 16 11:32:06 2025 +0000
@@ -0,0 +1,279 @@
+LOCUS       construct_2             6910 bp    DNA     circular UNK 01-JAN-1980
+DEFINITION  .
+ACCESSION   construct_2
+VERSION     construct_2
+KEYWORDS    .
+SOURCE      .
+  ORGANISM  .
+            .
+FEATURES             Location/Qualifiers
+     homology        1..4
+                     /label="CGCT"
+                     /color="#f7e8f7"
+                     /ApEinfo_fwdcolor="#f7e8f7"
+     misc_feature    9..25
+                     /label="feature"
+                     /ApEinfo_fwdcolor="#b4abac"
+     CDS             complement(223..1038)
+                     /label="yet another feature"
+                     /ApEinfo_fwdcolor="#993366"
+     misc_feature    complement(139..179)
+                     /label="yet another feature"
+                     /ApEinfo_fwdcolor="#c6c9d1"
+     misc_feature    5..8
+                     /label="yet another feature"
+                     /ApEinfo_fwdcolor="#faac61"
+     misc_feature    20..25
+                     /label="feature"
+                     /ApEinfo_fwdcolor="#84b0dc"
+     gene            complement(223..1038)
+                     /label="another feature"
+                     /ApEinfo_fwdcolor="#b4abac"
+     misc_feature    189..212
+                     /label="feature"
+                     /ApEinfo_fwdcolor="#b4abac"
+     misc_feature    51..74
+                     /label="another feature"
+                     /ApEinfo_fwdcolor="#b4abac"
+     misc_feature    84..112
+                     /label="feature"
+                     /ApEinfo_fwdcolor="#b4abac"
+     misc_feature    27..137
+                     /label="yet another feature"
+                     /ApEinfo_fwdcolor="#b4abac"
+     misc_feature    3347..3377
+                     /label="another feature"
+                     /ApEinfo_fwdcolor="#b4abac"
+     -35_signal      1367..1372
+                     /label="another feature"
+                     /ApEinfo_fwdcolor="#b4abac"
+     gene            2148..3167
+                     /label="yet another feature"
+                     /ApEinfo_fwdcolor="#b4abac"
+     -35_signal      1190..1195
+                     /label="feature"
+                     /ApEinfo_fwdcolor="#b4abac"
+     misc_RNA        1226..1778
+                     /label="feature"
+                     /ApEinfo_fwdcolor="#b4abac"
+     misc_feature    3396
+                     /label="another feature"
+                     /ApEinfo_fwdcolor="#84b0dc"
+     misc_feature    3192..3239
+                     /label="feature"
+                     /ApEinfo_fwdcolor="#c6c9d1"
+     misc_RNA        complement(1229..1336)
+                     /label="yet another feature"
+                     /ApEinfo_fwdcolor="#b4abac"
+     misc_feature    1865..1873
+                     /label="feature"
+                     /ApEinfo_fwdcolor="#b4abac"
+     misc_feature    3413..3416
+                     /label="another feature"
+                     /ApEinfo_fwdcolor="#faac61"
+     rep_origin      1190..1778
+                     /label="yet another feature"
+                     /ApEinfo_fwdcolor="#ffef86"
+     misc_feature    3300..3324
+                     /label="feature"
+                     /ApEinfo_fwdcolor="#b4abac"
+     -10_signal      1345..1350
+                     /label="another feature"
+                     /ApEinfo_fwdcolor="#b4abac"
+     rep_origin      1899..2147
+                     /label="feature"
+                     /ApEinfo_fwdcolor="#ffef86"
+     misc_feature    3397..3401
+                     /label="yet another feature"
+                     /ApEinfo_fwdcolor="#84b0dc"
+     misc_feature    3395..3412
+                     /label="yet another feature"
+                     /ApEinfo_fwdcolor="#b4abac"
+     -10_signal      1211..1216
+                     /label="feature"
+                     /ApEinfo_fwdcolor="#b4abac"
+     misc_feature    3168..3191
+                     /label="another feature"
+                     /ApEinfo_fwdcolor="#b4abac"
+     CDS             2148..3167
+                     /label="yet another feature"
+                     /ApEinfo_fwdcolor="#993366"
+     misc_feature    3351..3375
+                     /label="feature"
+                     /ApEinfo_fwdcolor="#f8d3a9"
+     misc_feature    1140..1163
+                     /label="another feature"
+                     /ApEinfo_fwdcolor="#b4abac"
+     misc_feature    5..3416
+                     /source="part_A"
+                     /indicates_part=True
+                     /note="From part_A"
+                     /color="white"
+                     /ApEinfo_fwdcolor="white"
+     homology        3417..3420
+                     /label="GGAG"
+                     /color="#f7e8f7"
+                     /ApEinfo_fwdcolor="#f7e8f7"
+     misc_feature    3421..4505
+                     /source="part_G"
+                     /indicates_part=True
+                     /note="From part_G"
+                     /color="white"
+                     /ApEinfo_fwdcolor="white"
+     homology        4506..4509
+                     /label="AATG"
+                     /color="#f7e8f7"
+                     /ApEinfo_fwdcolor="#f7e8f7"
+     misc_feature    4510..6158
+                     /source="part_H"
+                     /indicates_part=True
+                     /note="From part_H"
+                     /color="white"
+                     /ApEinfo_fwdcolor="white"
+     homology        6159..6162
+                     /label="GCTT"
+                     /color="#f7e8f7"
+                     /ApEinfo_fwdcolor="#f7e8f7"
+     misc_feature    6163..6497
+                     /label="feature"
+                     /ApEinfo_fwdcolor="#f8d3a9"
+     misc_feature    6163..6497
+                     /source="part_I"
+                     /indicates_part=True
+                     /note="From part_I"
+                     /color="white"
+                     /ApEinfo_fwdcolor="white"
+     homology        6498..6501
+                     /label="GGTA"
+                     /color="#f7e8f7"
+                     /ApEinfo_fwdcolor="#f7e8f7"
+     misc_feature    6502..6910
+                     /label="another feature"
+                     /ApEinfo_fwdcolor="#faac61"
+     primer_bind     complement(6799..6819)
+                     /label="yet another feature"
+                     /ApEinfo_fwdcolor="#85dae9"
+     misc_feature    6502..6910
+                     /source="part_F"
+                     /indicates_part=True
+                     /note="From part_F"
+                     /color="white"
+                     /ApEinfo_fwdcolor="white"
+ORIGIN
+        1 cgctgtcaat atgcaggtgc tgcaggaatt tgtctccaat cgacttgaga tatcgcaagc
+       61 atgaaattat attagacacg ccagagaact tgggaagcag cactggtagt gatagcaacc
+      121 cgagtacagt aacgagtgag cttctgatca tgagctctcc tacggcgtca atgcgacgaa
+      181 tgcccagcat gcactctcgc tatccatgcc tgctagggtg gcattatgct caggaacagt
+      241 tgtagcttgg atatcgtcta gatgaaatac ctggacactg gttagcgtcg tcaagcacca
+      301 aggacattca cacgctcgcg gtctttcgtc tccctaagcg ttcggcagtc gggcgtgaag
+      361 aggttgtaat cagacggaac aaagcctgaa aaaattccag cgacgtagta ttcatgatcc
+      421 tgtaccatct gtagccgccg cggcgcacga ttgaatgtag gctactaacc ccatccgtgt
+      481 tagcgatgtg agtttctacc gcaacgaatg ctcaagcgaa ccttcttctt tcgtccgcaa
+      541 cccacaagcc gtggttatga cagctaaatt gtcccagaca tccctttatt acacaagagc
+      601 tccagcggaa tacctagtca cagcggtaat gacacaaagc tcttagttag tccagggact
+      661 acttctgtct acagcacatc acactcatta tcagcatcag tgtagagacg gagaacatgg
+      721 gctatcctat accaagatcc gccatctaaa catttgaagt ttcccgtctt ctataactta
+      781 gcactcgacg ctattctgct gagtgcgctt agtctgtagc gacttgcgaa atccataaac
+      841 tgagaattga aagagagtgc ataaccgaaa cctttgtggc atatttccgt tgaaacgtac
+      901 cagaacagcc gtttagtgcg gaacatacag tatcctgata aagcactcaa cccaacagac
+      961 accctatgcc gatagcggga tgctaacaag tatagtcatg atgatttctc ggacagcggg
+     1021 gtttggtaca gctgcaatcc gtgatttaaa ttcggacctc tgcacacacc gacggttacc
+     1081 catatcctct acggctgtag gaagttttac cttggatgtc attctgattt cggcgtatct
+     1141 cacaggatgg tccaacgaaa ctaggcttta gacgagggat gaatgaccga cccccactcg
+     1201 tggcactaac ggacagactt ccctgacggt tattcgacca ttaaagtcag acatgcgggg
+     1261 gtgaataaat tagccaaatt gtgtcgaaga aaagacgtgc ggctggcaca taaggcagtc
+     1321 ttgatcctag tcttgcaggg atgcacgtaa gtcgcctcaa ttaactgcag ccgagctcca
+     1381 ggttaccaaa gaccctagta tgccagggcc taacggttgg agtatattat gggtacgcaa
+     1441 tagtgcggaa gttaacctgg gcaacatcca ggtgagaggt tggacggaag cgacagtaag
+     1501 tggccataga ctgccgagtc gtgttaatga atcgctatac gcccatggag ttgtggggtc
+     1561 gttttatccg agtaggggcc cgctgactac ttcgtccaga caatatgccg tcttcaatag
+     1621 tctacctgag agtcatgccg gcatttccga cgctgagtga aacccgcgta gccaggcgaa
+     1681 atttgcatct tgaaatacca ctgcagatca gccagtaagg cccatataag ggcgctggtg
+     1741 ttctggcgac agataaagtg ttatctaatg taacccgcgg acttttagag gatacttgaa
+     1801 tgcgggcata tcgtcccacc agcgtcacgt ggtcgggcta gcggcagaca aactctgccg
+     1861 atgtttttct ttgccgcgat agcgggctag tcaattcact atccggcgat gaagcataga
+     1921 ttgttatcgc gcttatgcgg aggataatca agtcttggca gaacctgctc gctcatgcac
+     1981 tggtgaggcg tggttatcct aacaaccgcc taggacgaag aatgggctcg gtagggacag
+     2041 ttcgtgcgtt tagcttcgtc ccatcttaat gctgtctgga gggaggctac atgcgaacag
+     2101 aagccgtggg cgaaagttgt tgatccgggt ctaacacgga taagggccat ggtgaacgca
+     2161 tcatgcgata cttcttggta gttcttctaa catgaccgtg ccatagccct taccctttga
+     2221 agaagttaac ctatctgccg tctcctgcac gaatagcgac tggactcggg tattttggat
+     2281 acctcacgaa agcacttcga tcggccgaag catggatatt tcgccggacg ggcccgaata
+     2341 gagagccttg tatgtcggtt agtacaacgc agtcctggag acatctacgc ggatgggcct
+     2401 aggggctgga cttaacattg ggtaacgtac ctggtccaaa gtgaatgcaa agcactttta
+     2461 caaagcgcgg gtccccgtgg gtgtttaggg tagaagattg gcggatgcta cgaacgatcc
+     2521 cgctttgaaa ctatcattac atcgtgtaaa agagacactt aacaaaggcc aataaactgc
+     2581 cagtaagaat cgctcagtgc ggtgctgggg acgctaagta ggggcaacag ccagtgaagg
+     2641 acgtgaccga cctttctcag ataagatatg ctggcgtcta tctaataagc atagtgaaaa
+     2701 accaaccatt tcacttacac gaagtacatt tgcattgcta gtaaagacgc ctaaacagaa
+     2761 gtgcccttgc atgctgtatg tctatagtcc ttagggaagc atcagccctt ctacttattc
+     2821 gaggtctgag aaaccctgga caagctccga attattcaat gtgcctgtct ccgaggttag
+     2881 atagcgctat gctcttaaga gttgcacaga atgaccatcc tggaatgtcc ctggaggggt
+     2941 ctaggtatgc tgatcgaagg gtgctctaag gacttgacgt gcgtccgagg agggtgctgc
+     3001 ctccttcgcc tttagatcca acgcggatca catgcgcgtg agctaatagg atcaccttct
+     3061 gctccgattt ttaccctcct gggtcacttc cgaatgaggt agcgggcgaa atataatgtc
+     3121 tccactcgta ggtgttccct gtatgtgaag ctctatagtg gacaaaggtt tgatgaacta
+     3181 gcccccgtat acgctctcac cgacggacgc gggggtctgt tatttgaagc atcatacatg
+     3241 cgaaggtgcc ttctcagcaa cgaaaggtag tgggagtgta caagttcaat gcgccgccat
+     3301 aggtctgagt atacaagggg atgcccccat ccacaacggg attggctacc cggagagctg
+     3361 gctccgctcc aacaaataat tatattaacc tattggaatt ccacctgcat atcagaggag
+     3421 gaacttctat gggacgaaag atgcgcagct cgacaaatct caaattggaa accgtctaag
+     3481 gtctttgagc ccacgctagg ccaccgaata gttgcgagct cgtgggcaat tgctggctag
+     3541 cggtttgtat cgtatacgta acaagagatt gcgccggatt cattcgtgtg gggtgctttc
+     3601 acatcggaat actcaagagt gggggtttgc gctttaatat gacggcctca tgcaccccaa
+     3661 aaataagagc gccaatttca tcgaccacat tccggacaat tctgacttcc ctgtcggatc
+     3721 gaccctcgct cacaactcct agaactccaa gacggtagga cgtcagccga aaaggaggag
+     3781 tgacgacggg ccctcctagc tgaagcaatg gggggcgtcg accctagcct ggtgtgggac
+     3841 ttcggagggt cgggcgtgtg gccattcctg cacgaggggc ccttgcagta tcgaactttg
+     3901 acgagaaagt ggggggcgac ctataaacat agcggagttc aatactcctg caagtgcatg
+     3961 atgacgttca gcgttggcac atcgaacgcg tcgctacact tgctcaccgg aaggcaaaat
+     4021 agaccggcag ctggcccgca cggacgtcta gactcctacg ctgtcaaatg cacgatgact
+     4081 attagcatgc ggaattcgag gcggccggta catcgagaca cgctggtctt aatacctgtg
+     4141 ttatgtcaaa acaagtgtct cggcggcttt gtactacgct gtgaatgcgc atgatgttgc
+     4201 gagaagctga acgttggtag cagtctacaa cagaaccgac gagctacgga cgggttacag
+     4261 caggatcccc tcttaaggca ttattcgacg actccaggtt ctaaccgatc agtaattgcc
+     4321 tcggatggtc gtacgtgtta accgagacag caaggcacca catagacaac tgcatagggc
+     4381 gcctacaggt ccacaatcag ggtggcccaa gatcctcaaa gacttgttgc agtctctgct
+     4441 tattccgttt aacacgttgt gtgagctcta gcttactacc tcatcggtgt cgggagtgat
+     4501 ttaggaatgg aagacgcgtt tagtcttcgg cccccagacg gcaccggcag agccactgcc
+     4561 aatgcctttt acgctgaact cttcgacttt ggcatgtgcg actgactata cgccgatggc
+     4621 cctaccctgc agcggaaagg cacagggcca aaaacagtgg aagcgcaccg ctagagcttt
+     4681 actaaatcct ttagggtgaa ccggtgttca gtcaacagaa acatatgact agtccttaat
+     4741 ggcactacta aaggcggccc atctcttttg taggtcacgt ctcatcgttt agcaagcgtc
+     4801 cgccatccga ggagtatcct agtacgtgag agggtgtttt acctcatcac atggtttttg
+     4861 gctagatgtg gcagatgcca gctgatacct tacaacccgc tataacggtt tctggatcga
+     4921 cgatacaacc tgcttcggca tatcataatg gcggcctcat aggacttcca atcatggtta
+     4981 tgcgagtttg atgtgttgaa gattgtgagg ggaaaccttt ttccgagtac gttgaatctg
+     5041 cgactgatgg tgaacaactc atcgagaggg atgtgcgggc agtctccttg atgcgcgaaa
+     5101 aggagtcgcg accgcgtgtt cgtgacgcac ttgatgctag accgtagggg ctcattatct
+     5161 cctgaaacag tagctagctt ttggtgtccg agtcagctta ggcacagtaa ttgaaaagaa
+     5221 ggaaatgcgt gaaaactaaa cgtagacact ccttgctaag aattccctgg tctttttcga
+     5281 gcatagacta ccgtaggtaa aaggcttgtc gtgtcacaaa tagacttgat ctgttcggca
+     5341 tatacacatc ctactgcttc agtaaccaag gacgattctc cggccattgg actgtgggac
+     5401 cacccgcgtt caaacggaat cctctacgaa cggttaagaa aggagcccac tgcttgcgga
+     5461 gacatatcgt tgctgagtgg tacaccggtg agtcaaaaag tactgacact actggtggac
+     5521 tctcgggtac gatgtgtggg gtattggcat actatggcgc taagcgtgga atagtgtttc
+     5581 caatagccct ttacctaaga agcattctga cacatgggtt ggacttttac acagacctat
+     5641 aactcgtatc cggcctggtg atgtatgtcc gcttatcact gaatgcagga ttccgccaat
+     5701 tccgctcgcg ggttctcgga caacgggcca tggagatgga tcaatgagcc atgttgatta
+     5761 ccatttcact acacacggtt agtcaattcc ggagatcata attcgacaat tgaatatgcg
+     5821 tgatacgctt tctgttacca ggatcgttgc taattagttt ccaatgtcac agtgttgggc
+     5881 ggcgaggtat cacggcgctc tgggtagaat ggcggtgcct gactggacct cataactggt
+     5941 aacataccta tgaccaaagg aggtcagaca ccgatgagtc ggtgacatgg gcggtcacag
+     6001 cgtgccctgc atagtaatac agctcgtttc tagacatttg tcctaattcg ccacacaagt
+     6061 acgagagcgg gggtaaccca tcaccatcgt gcccgtaggt acctaatctt catcgagcgc
+     6121 tattgttaaa gtggactcag ggatcggcat ctcgtgtagc ttttattatc cggcatgcat
+     6181 gcggcgttgc atcgcttcat cgtcatcgac atatcgttag cgggacttat cagggtccca
+     6241 tcacggctgt gacagctgtt cataagtgta atagcagtca ccccaccaaa tgcaagactg
+     6301 ttcccaaact aagtgctagg gaggttggct acctatcggc gtggcagttg accgggtttt
+     6361 tcttagtacc tgccttccaa tctccgataa aagcaagatg acttcctgct tgcgctaaag
+     6421 tctgaattcg ctaagggggc agattcatta ccagagactg ccaaagtcaa ccgccgaacg
+     6481 atactggaat atatggaggt aagctcccat aagagcacca cttcgtgtac cttgctaact
+     6541 cccttcatcc ccacccgcga aaacttaaga cgtcacccct gttattatcc cgtgcactcc
+     6601 taaagtgcga tgggcaagaa cgcaaacaat tgtctgagat ttatatgggc ggcggacata
+     6661 gtcagagagc cttatataat ctcccacgtc ttgccagtcc gagttatgag aaacccggga
+     6721 ccgatgacgc tattacggtc gcccagcgag gttcaacaga gcgaggcata ggagtcatta
+     6781 cgcgtgttag cttcaacatg cgtggaagtg aaacggatct ataaaacggc gtggagtcat
+     6841 cagcttgagc agatctaact tactcgccac gcgcgcaaat cgtctttcgc tgtccacgtt
+     6901 atacgtaact
+//
--- /dev/null	Thu Jan 01 00:00:00 1970 +0000
+++ b/test-data/init/2-step-golden_gate_plan_simulation/construct_4/provided_parts_records/part_J.gb	Fri May 16 11:32:06 2025 +0000
@@ -0,0 +1,196 @@
+LOCUS       part_J                  4380 bp    DNA     circular UNK 31-OCT-2019
+DEFINITION  .
+ACCESSION   part_J
+VERSION     part_J
+KEYWORDS    "Source" "Sequence" "Freezer" "Shelf" "Box" "Concentration" "Use"
+            "creator:SynthSys Center" "marker:SmR".
+SOURCE
+  ORGANISM  .
+            .
+FEATURES             Location/Qualifiers
+     rep_origin      join(4298..4380,1..166)
+                     /label="feature"
+                     /ApEinfo_fwdcolor="#ffef86"
+     promoter        1442..1476
+                     /label="another feature"
+                     /ApEinfo_fwdcolor="#85dae9"
+     misc_feature    2345..2362
+                     /label="yet another feature"
+                     /ApEinfo_fwdcolor="#b4abac"
+     CDS             complement(2550..3341)
+                     /label="feature"
+                     /ApEinfo_fwdcolor="#b7e6d7"
+     misc_feature    1187..1210
+                     /label="another feature"
+                     /ApEinfo_fwdcolor="#b4abac"
+     misc_feature    1366..1396
+                     /label="yet another feature"
+                     /ApEinfo_fwdcolor="#b4abac"
+     CDS             complement(2550..3455)
+                     /label="feature"
+                     /ApEinfo_fwdcolor="#993366"
+     misc_feature    2421..2449
+                     /label="another feature"
+                     /ApEinfo_fwdcolor="#b4abac"
+     -35_signal      3766..3771
+                     /label="yet another feature"
+                     /ApEinfo_fwdcolor="#b4abac"
+     CDS             167..1186
+                     /label="feature"
+                     /ApEinfo_fwdcolor="#993366"
+     misc_feature    2526..2549
+                     /label="another feature"
+                     /ApEinfo_fwdcolor="#b4abac"
+     gene            167..1186
+                     /label="yet another feature"
+                     /ApEinfo_fwdcolor="#b4abac"
+     -10_signal      3744..3749
+                     /label="feature"
+                     /ApEinfo_fwdcolor="#b4abac"
+     CDS             1503..2222
+                     /label="another feature"
+                     /ApEinfo_fwdcolor="#ffef86"
+     misc_feature    1409..1426
+                     /label="yet another feature"
+                     /ApEinfo_fwdcolor="#b4abac"
+     -35_signal      3589..3594
+                     /label="feature"
+                     /ApEinfo_fwdcolor="#b4abac"
+     terminator      2227..2298
+                     /label="another feature"
+                     /ApEinfo_fwdcolor="#c6c9d1"
+     misc_feature    1319..1343
+                     /label="yet another feature"
+                     /ApEinfo_fwdcolor="#b4abac"
+     misc_feature    1370..1394
+                     /label="feature"
+                     /ApEinfo_fwdcolor="#f8d3a9"
+     misc_RNA        3625..4177
+                     /label="another feature"
+                     /ApEinfo_fwdcolor="#b4abac"
+     terminator      2314..2341
+                     /label="yet another feature"
+                     /ApEinfo_fwdcolor="#c6c9d1"
+     misc_feature    2364..2474
+                     /label="feature"
+                     /ApEinfo_fwdcolor="#b4abac"
+     misc_RNA        complement(3628..3735)
+                     /label="another feature"
+                     /ApEinfo_fwdcolor="#b4abac"
+     misc_feature    4264..4272
+                     /label="yet another feature"
+                     /ApEinfo_fwdcolor="#b4abac"
+     RBS             1485..1496
+                     /label="feature"
+                     /ApEinfo_fwdcolor="#ffef86"
+     misc_feature    2353..2356
+                     /label="another feature"
+                     /ApEinfo_fwdcolor="#ff0000"
+     misc_feature    complement(2476..2516)
+                     /label="yet another feature"
+                     /ApEinfo_fwdcolor="#c6c9d1"
+     misc_feature    3539..3562
+                     /label="feature"
+                     /ApEinfo_fwdcolor="#b4abac"
+     misc_feature    1427..1430
+                     /label="another feature"
+                     /ApEinfo_fwdcolor="#ff0000"
+     -10_signal      3610..3615
+                     /label="yet another feature"
+                     /ApEinfo_fwdcolor="#b4abac"
+     misc_feature    1211..1258
+                     /label="feature"
+                     /ApEinfo_fwdcolor="#c6c9d1"
+     gene            complement(2550..3455)
+                     /label="another feature"
+                     /ApEinfo_fwdcolor="#b4abac"
+     rep_origin      3589..4177
+                     /label="yet another feature"
+                     /ApEinfo_fwdcolor="#ffef86"
+     misc_feature    1414..1419
+                     /label="feature"
+                     /ApEinfo_fwdcolor="#84b0dc"
+     misc_feature    2388..2411
+                     /label="another feature"
+                     /ApEinfo_fwdcolor="#b4abac"
+     terminator      1409..1411
+                     /label="yet another feature"
+                     /ApEinfo_fwdcolor="#c6c9d1"
+     misc_feature    2357..2362
+                     /label="feature"
+                     /ApEinfo_fwdcolor="#84b0dc"
+ORIGIN
+        1 ctcatgggag tgtagcgcta gccatagttg acctgtcagc cggtcaaggt tggtccgaac
+       61 ctagccagtt agacgaccag ctcccccact attgcacagt gcctgtataa gcacgtcagt
+      121 gtctggcacc actgtgcgcg gtgtggtcct cgggacgatc ttcctacggc tacccatgcg
+      181 ctagtgatta cagacgatcg ttttttcttt ttctgtggtg caaatacaca agatacgtca
+      241 agagtcctag cagcctcatc ttgccaattg caggggtacc gattcaccca tggtatcagt
+      301 cacgcaaaaa aagacgacat cggagttgct ggcgactggc aaaagaaaac atctatctgc
+      361 cgtggcgttc gtctagcgca gcgagccgac tgactactcc gttatctcaa atttagtttc
+      421 gtaagatctt cacgggagcc ggccagctga agaatctata ggtctaccgc tagaggaagc
+      481 ccgtttacaa ccgacgtact agtccgacag caatcgtcag catgccaatt tattgtatca
+      541 ggttgagaat gcaccactac ggaatcgacg tgccactggc cgcacgatac tagtgcgctg
+      601 gtaaacaggc caggagctct aaatctggag tggtgtgaat ttaaccgcgg aacgattgtt
+      661 gcacgcggtc cctgtgactc tgttgggagc actgtccccg gctccggata agtgatgtga
+      721 acgaaaaggt gggctgacca gagatagggt taaggacggg cgatcgtagt ggacgattac
+      781 tgctgatctt ccgagcactc tgagtcgcgc ggcgtatcgg gagttacccc gctcgctaca
+      841 catctgaatt ccgccggata ctatgggtgc agagtggatc accttttcgt gacccgtata
+      901 ttcgtcgttc tcatcactgt cctccgcgat ttatttcaat cgtcggtttc gccagatgca
+      961 ttcctgggga agtcatcgcg acagtgcgct gcgcgcacag ctcttcttgg tttattcgag
+     1021 attgtggttt atcaacatgg tctatctacg gactgattag aatattccca cgttaagccg
+     1081 acgtgcattg gtactggctc cttaattaag cgcagagggt aggcgccttt tcttgtgcaa
+     1141 accattatat gaggaactag caaacactat ggcgcaatat gtccacgtga ctcgagcatt
+     1201 ctgtgttgcg gtagcgattt cactagtcac aaacggatag attctacggc gcacccggtg
+     1261 catcgttgta tgttcagcaa tttggtcata tcccgctcct ctattcaatc tcttttttcg
+     1321 tcaggggggg cacatacttg gagcagctgc gcctaacatt acaataagca gtcggagctc
+     1381 agtacaaaac ccttatctta gcggtccgtt ctggaattcg gtctcaggag atatgcaggt
+     1441 gtttacggct aggcacttac gcgaaatttc agctcgcggc aaactgtgct tatgcgactt
+     1501 cagctagtcg tcatcgagtg ctgacgcgct tgttctacct taaggtgccc gctatcgcat
+     1561 tgtccagggt tcggctatga gggtcggaac cagatcgcac ctacatgatg tcacgatact
+     1621 attattcacg tcgttagaga acggacggtc cttcgtcctc acaggaaaat tattagaaat
+     1681 ggtcaaccgg gtccacaaac gggcaattgc cactttggta gtacggttgc acataagatg
+     1741 atatttacgc cttctgcgtt caggttacga tagtcgttga tggggctcgc tccgggtgaa
+     1801 gttgatccag taaaatgggc gtcgatactt ctcctgtgag ctaagcgtct aaattcattc
+     1861 ctagtctcgt gacgagaaca gaaaagacta aaccacgcgt gatggacctt ggtaagcgct
+     1921 tgtcggtcta acttgtctca tctcacacgg tatgttcttg tgagcgctga ccagcccgtg
+     1981 tccctgacgg ggaattcatt ctaacttacg gcttgggcgt cgtgatgttt cggaatccag
+     2041 gatattacac agtagatgta gcttgtggcc gaacgagtgt atttcctgcg tcggattacc
+     2101 tcatttcttg ttaatctgcc tacaattaag ccctttcagc agccttccct ctcgtttata
+     2161 tttcgacagt caccgtgaca gtgtgatcga gctgtgggaa aatcacaata tagacgttag
+     2221 ttgcttcgac agaaacggcg aatgtacgcg gttgtgatgg atgagacagg ccattcaatt
+     2281 ctattcagcg aagttcagat tggttgctac tgctaaagga tgcgcatttg tcctttctgc
+     2341 gcacctgcat atacccctaa gatgccagcg caatacggca tcgcagggca agcaacaccg
+     2401 cacagcatgt ccctaaaggg aagatttaat acggactcag tcaagttgtg agaaacgaca
+     2461 atacattgag tggaatgccc tttggtacgt tggcgataga tctaacgaga aacttcaacg
+     2521 agatctagag tatcggactg agatgcatca tggctaggga ttgctgaatg gatatctttg
+     2581 ccaaaatgag ctcgactagg aatctcagac tgccagctac gaaaagctgg gggatattca
+     2641 tttccgctct tgtaaggcgc acgatgaccc tgtggagcaa aattcgacgc ggcaacgtag
+     2701 tcaaagtacg gcctatctgg gacggagatg ggattgtttc tgtattcatg ccggcctctt
+     2761 gagattgtaa ggatacccgg ccacagtctc gtaagaaacc cgatatcgct caaacgaatt
+     2821 gacatcagtt agggcttgcg ctctagcaac cacgcgtcgg gtgttcgact gaatttaaga
+     2881 tccagcgcaa accattcctt aaaggcggtc caggtgaaac cggctctgat aatgtacagt
+     2941 ggattgtcca gttcgcttca aagtgcaatc aggcaaggta ctggcaagtc accgcttggg
+     3001 gccggtttca gtggagcttt atcgacaaaa ggccgggccc tttggcctag agctcacttt
+     3061 tggtgtcgtt cacgagtgag aactttggct cgcagcttga atgcttgtca cgtttagggt
+     3121 tatacaacgt ttctataaac tacctatgac aaatcccgat cttctgaaac tccataagga
+     3181 ctaagagagt ccgcgacagt ttcacttggt cggtgctatt gactatgtca cgcatgcccg
+     3241 gtaaagcttt taagcaaagc ctgatatatc acgggaggtt actcaaagca ttttctaaag
+     3301 ggacagcgga ctcacattag cctaatataa acccgatcag gccatgcacc tcgattcacc
+     3361 ggaaggtagt accatgcacc ggatatttgg gacaacagtg aatagtacat cgtaaaatgt
+     3421 caaggcctag ctatttttca ctggtgtctt atctctatta caacacacac ggatgtcccg
+     3481 agcctacact ttcaaatata ctcaaggttc gctgttaagg gtaatacaag agtgctcggt
+     3541 ttagtatcca tatgttggta caagtgactg tgctagccgt aaattaattc ggcttccatt
+     3601 ccagcttggg tgtttagggt ctagacggtt gaaaccagaa agagtacaga caaaaccgta
+     3661 gctctcccaa ggttgatcct ccagacacct acccacacta gtagcgcagg cctagaggag
+     3721 acgttaggag cggaattgta cattcagtat cgcattaagc acaaagacag acaaacctag
+     3781 aagccactta tcccctcgta ggagtacaac ggcagcgctt tcgggaggag ttgcctaact
+     3841 acgctctgga cagcaagtcc cagaatgaag aaaatgactt ggcgagaacc caccactaca
+     3901 tgcagggtct tgggaccggt cagcacagct tatccatgcg gcaattccgg acgaccgcga
+     3961 atgaggatca cgacactgcc gatgttgcac cattgacctt ctcctatgca acaagggctt
+     4021 aagatggtag atggtaatag agtagcctgc gaccttatgc ggtaatacac aaaaaccggt
+     4081 aaacagtgcg ttgatgctgt gtgctggcgc atttgtgtac cttgctgggc tcgtataaaa
+     4141 ttctgtcagc aggacgttca cctcccttct gctagtcgct aggcacaaac ggaaaaggtc
+     4201 taatcgcgcg cgtgctcgtt agagtactgg ggcctcccac cacggatgat cacctcgccg
+     4261 atacatttgg ccttatgtct caataagacc tcatggtcta tcctacacca tagatttgga
+     4321 aagtctagtt gctgcctagc aggctgatag caagcgtcgt acgaggatcg aggaagggca
+//
--- /dev/null	Thu Jan 01 00:00:00 1970 +0000
+++ b/test-data/init/2-step-golden_gate_plan_simulation/construct_4/provided_parts_records/part_K.gb	Fri May 16 11:32:06 2025 +0000
@@ -0,0 +1,108 @@
+LOCUS       part_K                  3634 bp    DNA     circular UNK 28-OCT-2019
+DEFINITION  .
+ACCESSION   part_K
+VERSION     part_K
+KEYWORDS    "creator:SynthSys Center" "marker:KanR, BlpR".
+SOURCE
+  ORGANISM  .
+            .
+FEATURES             Location/Qualifiers
+     misc_feature    1268..1284
+                     /label="feature"
+                     /ApEinfo_fwdcolor="#b4abac"
+     CDS             complement(join(3199..3634,1..380))
+                     /label="another feature"
+                     /ApEinfo_fwdcolor="#b7e6d7"
+     misc_feature    2374..2377
+                     /label="yet another feature"
+                     /ApEinfo_fwdcolor="#faac61"
+     misc_feature    2395..2419
+                     /label="feature"
+                     /ApEinfo_fwdcolor="#f8d3a9"
+     promoter        1382..1560
+                     /label="another feature"
+                     /ApEinfo_fwdcolor="#c6c9d1"
+     misc_feature    2370..2373
+                     /label="yet another feature"
+                     /ApEinfo_fwdcolor="#ff0000"
+     misc_feature    2389..2393
+                     /label="feature"
+                     /ApEinfo_fwdcolor="#84b0dc"
+     misc_feature    1239..1261
+                     /label="another feature"
+                     /ApEinfo_fwdcolor="#f8d3a9"
+     rep_origin      complement(2510..3098)
+                     /label="yet another feature"
+                     /ApEinfo_fwdcolor="#ffef86"
+     terminator      2117..2369
+                     /label="feature"
+                     /ApEinfo_fwdcolor="#c6c9d1"
+     CDS             1562..2112
+                     /label="another feature"
+                     /ApEinfo_fwdcolor="#b7e6d7"
+     rep_origin      671..1106
+                     /label="yet another feature"
+                     /ApEinfo_fwdcolor="#ffef86"
+ORIGIN
+        1 accagacagc ttccctgctg cttagagtgc catggggaat tgatctgtgt tcaatgactt
+       61 taccataagc gcgcatcgtc attgcatcac gtgctttatc tctcgtagct agtagggaac
+      121 aagagtttgc gaccactggt ggaatttcta gccgctatgt gaaaagtcac tagtagtatt
+      181 aatagtcggc acatcgcgta cgcagtgctg agattcccct cactgttact tgagctagtc
+      241 gcgccttgac agaccgcctt tcgaaggtgg cagagtgcct aatatattgc cacgttgagc
+      301 gtactccttc ccggagtttc atcttaccgc cgggcgcgcg aagctacgtt tttcgaattt
+      361 actaacgcac gctgacggtg gaagggcgat tggactggtt agattcaggt atgccttaag
+      421 cgtactttac aaccagaggc tttatttgat tgtctaatct tcgtcaaaga acgaatacca
+      481 gcgcttgagg ggtgactaga ctaataggag acaccgtctg tatcactcgt cggctatggc
+      541 cgtactgtga acgcgacggg ccctaccagg ccacagattc ctatgtacgt tgcaagggtg
+      601 ggctttgacc gttgcaacgg cgcactaggt ggcattcttc tctgctgcca atgatccgcc
+      661 tcgccgagct aggggcgaag caggttatga cgcagcggaa cggtagtact atctaatatc
+      721 aactaaaatt gtttctcaaa ggttcaaact agtattcttt attagaaacg atgatggcat
+      781 ccggaacagg gttatggccc aggtgctgga tgaagccttg cctcgaggga cttagtcgcg
+      841 tcgcccctct accaaggcgc taacggctag cgagatggtt gaggcgggag ccccgccact
+      901 ttctagttga attcagagct acgtatcctg atgctaatcc ctcgaagaac tttccgatgc
+      961 agctactatc tctttcgtaa agttagaata ggaacccggt aacggtggaa cgtcccgtca
+     1021 taggaggttg tctcctacac tatctaagta cgtcagaaga tcgatttcct cagccgctga
+     1081 ccccgtccgg catgaccagc gccgaacgta taggccgtat tgctgccgga acgactgctt
+     1141 caaaggtaac catagccgtg gtacagtgac aacccactta gctattaaat catgcgcact
+     1201 ctagacctct tgcacatacg gagcaactat gtatctaatt ggcacgagac atagaggagg
+     1261 gccaatcaca gtagtttact ggtcgaattc cacctgcata tggagagaca ctccttcatc
+     1321 aacagcagag gttacatacg tttaacctga ccgatggttg cccatcgaaa gcaaggaccc
+     1381 acgggtaggc agctgttgtt tgatatgctt ttgtccccgg aaggcgccga taaaattata
+     1441 cgccgtcccc cgcgtccgtt acgagcttcg tgatgttgcg ggctgaagtt ccctacgagt
+     1501 caataggcca actcgaatgg ctaaatggtt gcaacccaca ggctcaactt tgaaggtaat
+     1561 acgccaaaat ccaatatgct ctttcgggta gcgcataaaa ccttctgggg gccactgcag
+     1621 acagtcatgg aggactacgt gcaacactac gctctagagt gatgatgtgg cagtcaaccg
+     1681 agggctgtta agagaagtct gtgcacgaaa atcaatgagt cggtgtaatc ttcaccttcc
+     1741 tacaaaccaa ggcttgaggg cctcaatttc gagcaccact tcttgaccaa gccgttcgcc
+     1801 ggtataggag ttacgaattc gggtcgtctg ccgtctttga accatagata agtacctccc
+     1861 gagtcgggag aacacgaatc gcatcagaac tcatcgaagg gtgttacttt gcccatcggc
+     1921 atccccgaag attaattgca ttcgaaattt taacttcgag aatcatccgt gctaaccaac
+     1981 gtggacgagc tatgaacgtt tacgtgttca gtatctagga attgacacgt ctccgatagc
+     2041 gggagtcacg gcatgagtta cggcttttgt gaccagcgtc tgtgtaattt tattgacagt
+     2101 ttcatatata gtgtctcgtc ttgcctttga gattcacagg ctgtaagagg gatgccgtcg
+     2161 tgtatatgcc tgcagttaga gcttccttgt caggacgagc aactcactcc ttctggtgat
+     2221 gctttgctag catgtagctt cgggtacttg cggaaaagga cagcctacag tgtctgcggc
+     2281 ggtacgtcac taatatgaca tacgctgtgg acatcgtgaa gcggcgaatc gctccagatt
+     2341 gaggtttaca gagtactcca tagtcacaca actcagaata tgcaggtgct gcagtgaccg
+     2401 aatcctctca ggtcgcgctg gcggcccgtt tgagagtgct gaaagcgaag tttatccgca
+     2461 ccgtcatcca gtgcacctcc cccagagaat gattacttgt gaatgcggtt aacctgaggg
+     2521 ccgacgccgc gattaaattt ttaacgtgat gcacaagctg ggggcactct cccctggggt
+     2581 caggttataa ttttaaaccc actacggacc tggactgcaa gatgcttagt ccacgcgtct
+     2641 catagaccgt cggtctatag ccatgttcaa cgccgccagg ctgggcgcat aactgtatgt
+     2701 gactttgtcc acatccaagg cgacgatggc ggcagttggc cggagggctg gctgtcaagg
+     2761 ggccacgcgg atgaagggag ctcatacgca actatggagc gcggtatata gtataggatc
+     2821 cgccgggaca cgcgggaatc aagggacaaa ggagcagtca gcgtgaaatc tttacgggtg
+     2881 aagcgcgctc gtaccaccta gtcccgccta aggcccttgt gtcgtgcaac atcgctgggg
+     2941 cgacggatga caatatgatc aaggcccgag agctttgaat gtaagaggcg tattataaag
+     3001 cctaggtccg catgttgata cggggagcag cccatgcgca gtaggaaggt ccgaccaccc
+     3061 ttttctgagg tctactccaa cctccttgcc gagtgctctc cgctatctcc acgcatagca
+     3121 tactccgctt ctaacatctt cttcaaagca tacacgctac ttagcagagc aaatcgacac
+     3181 gcccatggag tggtccgctc aaaccgcgca attaagtata agctaatgtg acggaccgga
+     3241 cctacgattt cccccaactc gtggggatca gttgactcgt ctcagcttat gagacataat
+     3301 tacggtcata gggtacgcct atgcccctca gagatctcta ggtcatatgc cctatcgggt
+     3361 gctcggtgac cattgtctca tacaaagtca tatttggcag ggcttctatg gacgagtatt
+     3421 atgtgcccaa aagggaacgt ctgagttggg attcgcttct aaccaatact ctaatggtac
+     3481 ctaatttaat gtggtcgctg cgcaccccgc cgggtacaac tgctgagttc ctgagatcgg
+     3541 tacggcaaac atcttttatc cagacgaggg ttctggccag aattgatgtt cagatacgag
+     3601 aaggcatgtc atgtcacaag gattttggag aatt
+//
--- /dev/null	Thu Jan 01 00:00:00 1970 +0000
+++ b/test-data/init/2-step-golden_gate_plan_simulation/construct_4/provided_parts_records/part_L.gb	Fri May 16 11:32:06 2025 +0000
@@ -0,0 +1,79 @@
+LOCUS       part_L                  2267 bp    DNA     circular UNK 28-OCT-2019
+DEFINITION  .
+ACCESSION   part_L
+VERSION     part_L
+KEYWORDS    "creator:SynthSys Center" "marker:KanR".
+SOURCE
+  ORGANISM  .
+            .
+FEATURES             Location/Qualifiers
+     misc_feature    join(2263..2267,1)
+                     /label="feature"
+                     /ApEinfo_fwdcolor="#84b0dc"
+     terminator      2..59
+                     /label="another feature"
+                     /ApEinfo_fwdcolor="#c6c9d1"
+     CDS             complement(1140..1955)
+                     /label="yet another feature"
+                     /ApEinfo_fwdcolor="#b7e6d7"
+     misc_feature    2206..2209
+                     /label="feature"
+                     /ApEinfo_fwdcolor="#ff0000"
+     misc_feature    2202..2205
+                     /label="another feature"
+                     /ApEinfo_fwdcolor="#faac61"
+     terminator      2139..2182
+                     /label="yet another feature"
+                     /ApEinfo_fwdcolor="#c6c9d1"
+     rep_origin      complement(254..842)
+                     /label="feature"
+                     /ApEinfo_fwdcolor="#ffef86"
+     misc_feature    2248..2251
+                     /label="another feature"
+                     /ApEinfo_fwdcolor="#ff0000"
+     misc_feature    2185..2190
+                     /label="yet another feature"
+                     /ApEinfo_fwdcolor="#84b0dc"
+     terminator      1025..1119
+                     /label="feature"
+                     /ApEinfo_fwdcolor="#c6c9d1"
+ORIGIN
+        1 gtccgatgcg agcaccacct atagataccc taatcagcat ggtcccggtg accattacca
+       61 ccgacggcct tgttttaaac gaaggcgctc actatacaag aaactaatgt ctcccacaag
+      121 gctcagaccc agccggtgct ttcagcgctc cccgttggcg ccccccgaag accatagaga
+      181 ggtgctctgt taacaactat aatgaaaggg attattgagg gagtcggagg tgaattctga
+      241 agccttaccc ctacggtcgt ggtcatcatc acggatcgcg ataagcggcc ggtctgttac
+      301 ggacgccact acgaggaggg tttcttggca atcaaggcta cgcattacaa ccatcggggt
+      361 cggtctggct gaacaatctt gatgttcaac ctttgttacc ggctccttgt gttattatcc
+      421 ggtttttttg atctatatgt ttataaggaa gcggtgcaga ccgtagagaa ataccggcta
+      481 aggcagtcgc tcaatgcaca ccagcatcgc cgagacatat aaagccataa acattaattg
+      541 gaatgctagt cacagcgtgt tgactggacg cttaaaagtt tctacaaaag gtatagtttt
+      601 aacatttctc tgagttagcg ctatcgggtc gactgacatc tagaattgac acgttactca
+      661 cctggatcct agtcacactc cgggaaccgc tcgcttagtg gcagtagcgg ggggcgtccc
+      721 taggatagct gcgcaaagcg tggtttatct aatcgtggct tgtgtggaca tgatgctgtt
+      781 caggcgcatc tgtggccgcc acagcattac caagctaatc agaaaccgcg gcatgtcccc
+      841 gcgatgcgag aggcatctgt tagagccaaa gagtggaggt ctgtaatatc gctagcggag
+      901 attttctaag gggcgtggga ctttatcccg atatggctga acgatccaac ggcaaatggt
+      961 tctgccattg aactttaacc atgaatagac tccaggcgag ggataatgga aataatagca
+     1021 ggaaatgaca atctactagg tgcgcactat caagattgta tgtttgcgta tcgtagttct
+     1081 aatggtcttg tgtcccgtat tgggtcggac ggtgctgttc ctgatcgtag caatgcccgg
+     1141 ttagaatcac gcatcggagc gatcatttcg ggcgatacgc gttcgttctg tccactcttg
+     1201 tgggagtccg acgtatgcct gctcggtatt gttttattca ggcgacagta cctcccattc
+     1261 aaatatacag ggttatacta cacaccacga gtaataaaga cttgtgttgt gccaattcct
+     1321 cgtgggactg ccacgctcgt gagcttcgcg gttacatacc cctatgtccc caactgttgg
+     1381 tggcaaatcc ctaatctaat ctattgtatc acagtcggtc aacgactgaa attggggcaa
+     1441 caccaacagt gctcttacga tattcgtctg tgtctaacaa tccaacaaaa agctgttatt
+     1501 atgatggagg atcttggatt gcgtcagtac tacggtgttg tacgagaatt gcatgatgat
+     1561 tcctcgatgt cgagtccttg caagatcgtg atctatagcc aagctgctgc tgtagatcaa
+     1621 cctcaccggg gcgggggtcc cattactatg ggcggcatta gagtaccata gatgaacgcg
+     1681 agcagagaca tgtcaatgta tcccagtcct gcagtactac gtcagtctct gctcctgggg
+     1741 ccaatgcacg cctgtagaat agggccgtgt tcccatgaga aatttgaggg acttacgatt
+     1801 agatggcctt ggcaggggac tccgcgtacg tgtggggatg aaccggcacc ggccttggcc
+     1861 ctgagtaaat gtaagcgata tcaacttcgc tattcatgat cagtggtatt cgtgtaggca
+     1921 ccgaaagtcc cttggcgaaa gtagagacat acgatacgga ccgcaagcga gcagaatttc
+     1981 agcacatgac agttattagc ttttttctaa tggtgctccc attatgattg tcaagtcccg
+     2041 actgctagct gtaggatgaa acacatccac acacgtgtta ccatactgat tttgacacta
+     2101 cttcctaacc gggccgaatg gtatctgctg cgatgcttag ttacgtaaca gccgaatgtc
+     2161 acgccactgc atattgtggt tctggaattc cacctgcata tgtcacgcta gagaccgtat
+     2221 gaggtgggcg gatagtggtg acttcaaacc catatgcagg tgctgca
+//
--- /dev/null	Thu Jan 01 00:00:00 1970 +0000
+++ b/test-data/init/2-step-golden_gate_plan_simulation/part_records/part_A.gb	Fri May 16 11:32:06 2025 +0000
@@ -0,0 +1,197 @@
+LOCUS       part_A                  4292 bp    DNA     circular UNK 28-OCT-2019
+DEFINITION  .
+ACCESSION   part_A
+VERSION     part_A
+KEYWORDS    "creator:SynthSys Center".
+SOURCE
+  ORGANISM  .
+            .
+FEATURES             Location/Qualifiers
+     RBS             2332..2343
+                     /label="feature"
+                     /ApEinfo_fwdcolor="#ffef86"
+     misc_feature    2208..2238
+                     /label="another feature"
+                     /ApEinfo_fwdcolor="#b4abac"
+     promoter        2289..2323
+                     /label="yet another feature"
+                     /ApEinfo_fwdcolor="#85dae9"
+     misc_feature    3162..3178
+                     /label="feature"
+                     /ApEinfo_fwdcolor="#b4abac"
+     -35_signal      228..233
+                     /label="another feature"
+                     /ApEinfo_fwdcolor="#b4abac"
+     gene            1009..2028
+                     /label="yet another feature"
+                     /ApEinfo_fwdcolor="#b4abac"
+     -35_signal      51..56
+                     /label="feature"
+                     /ApEinfo_fwdcolor="#b4abac"
+     CDS             2350..3027
+                     /label="another feature"
+                     /ApEinfo_fwdcolor="#ff00ff"
+     CDS             complement(3376..4191)
+                     /label="yet another feature"
+                     /ApEinfo_fwdcolor="#993366"
+     misc_RNA        87..639
+                     /label="feature"
+                     /ApEinfo_fwdcolor="#b4abac"
+     misc_feature    2257
+                     /label="another feature"
+                     /ApEinfo_fwdcolor="#84b0dc"
+     terminator      3119..3146
+                     /label="yet another feature"
+                     /ApEinfo_fwdcolor="#c6c9d1"
+     misc_feature    2053..2100
+                     /label="feature"
+                     /ApEinfo_fwdcolor="#c6c9d1"
+     misc_feature    2278..2281
+                     /label="another feature"
+                     /ApEinfo_fwdcolor="#ff0000"
+     misc_RNA        complement(90..197)
+                     /label="yet another feature"
+                     /ApEinfo_fwdcolor="#b4abac"
+     misc_feature    726..734
+                     /label="feature"
+                     /ApEinfo_fwdcolor="#b4abac"
+     misc_feature    2274..2277
+                     /label="another feature"
+                     /ApEinfo_fwdcolor="#faac61"
+     rep_origin      51..639
+                     /label="yet another feature"
+                     /ApEinfo_fwdcolor="#ffef86"
+     misc_feature    2161..2185
+                     /label="feature"
+                     /ApEinfo_fwdcolor="#b4abac"
+     -10_signal      206..211
+                     /label="another feature"
+                     /ApEinfo_fwdcolor="#b4abac"
+     misc_feature    complement(3292..3332)
+                     /label="yet another feature"
+                     /ApEinfo_fwdcolor="#c6c9d1"
+     rep_origin      760..1008
+                     /label="feature"
+                     /ApEinfo_fwdcolor="#ffef86"
+     terminator      3032..3103
+                     /label="another feature"
+                     /ApEinfo_fwdcolor="#c6c9d1"
+     misc_feature    3158..3161
+                     /label="yet another feature"
+                     /ApEinfo_fwdcolor="#faac61"
+     misc_feature    3173..3178
+                     /label="feature"
+                     /ApEinfo_fwdcolor="#84b0dc"
+     gene            complement(3376..4191)
+                     /label="another feature"
+                     /ApEinfo_fwdcolor="#b4abac"
+     misc_feature    2258..2262
+                     /label="yet another feature"
+                     /ApEinfo_fwdcolor="#84b0dc"
+     misc_feature    3342..3365
+                     /label="feature"
+                     /ApEinfo_fwdcolor="#b4abac"
+     misc_feature    3204..3227
+                     /label="another feature"
+                     /ApEinfo_fwdcolor="#b4abac"
+     misc_feature    2256..2273
+                     /label="yet another feature"
+                     /ApEinfo_fwdcolor="#b4abac"
+     -10_signal      72..77
+                     /label="feature"
+                     /ApEinfo_fwdcolor="#b4abac"
+     misc_feature    2029..2052
+                     /label="another feature"
+                     /ApEinfo_fwdcolor="#b4abac"
+     CDS             1009..2028
+                     /label="yet another feature"
+                     /ApEinfo_fwdcolor="#993366"
+     misc_feature    3237..3265
+                     /label="feature"
+                     /ApEinfo_fwdcolor="#b4abac"
+     misc_feature    3154..3157
+                     /label="another feature"
+                     /ApEinfo_fwdcolor="#ff0000"
+     misc_feature    3180..3290
+                     /label="yet another feature"
+                     /ApEinfo_fwdcolor="#b4abac"
+     misc_feature    2212..2236
+                     /label="feature"
+                     /ApEinfo_fwdcolor="#f8d3a9"
+     misc_feature    1..24
+                     /label="another feature"
+                     /ApEinfo_fwdcolor="#b4abac"
+ORIGIN
+        1 tcacaggatg gtccaacgaa actaggcttt agacgaggga tgaatgaccg acccccactc
+       61 gtggcactaa cggacagact tccctgacgg ttattcgacc attaaagtca gacatgcggg
+      121 ggtgaataaa ttagccaaat tgtgtcgaag aaaagacgtg cggctggcac ataaggcagt
+      181 cttgatccta gtcttgcagg gatgcacgta agtcgcctca attaactgca gccgagctcc
+      241 aggttaccaa agaccctagt atgccagggc ctaacggttg gagtatatta tgggtacgca
+      301 atagtgcgga agttaacctg ggcaacatcc aggtgagagg ttggacggaa gcgacagtaa
+      361 gtggccatag actgccgagt cgtgttaatg aatcgctata cgcccatgga gttgtggggt
+      421 cgttttatcc gagtaggggc ccgctgacta cttcgtccag acaatatgcc gtcttcaata
+      481 gtctacctga gagtcatgcc ggcatttccg acgctgagtg aaacccgcgt agccaggcga
+      541 aatttgcatc ttgaaatacc actgcagatc agccagtaag gcccatataa gggcgctggt
+      601 gttctggcga cagataaagt gttatctaat gtaacccgcg gacttttaga ggatacttga
+      661 atgcgggcat atcgtcccac cagcgtcacg tggtcgggct agcggcagac aaactctgcc
+      721 gatgtttttc tttgccgcga tagcgggcta gtcaattcac tatccggcga tgaagcatag
+      781 attgttatcg cgcttatgcg gaggataatc aagtcttggc agaacctgct cgctcatgca
+      841 ctggtgaggc gtggttatcc taacaaccgc ctaggacgaa gaatgggctc ggtagggaca
+      901 gttcgtgcgt ttagcttcgt cccatcttaa tgctgtctgg agggaggcta catgcgaaca
+      961 gaagccgtgg gcgaaagttg ttgatccggg tctaacacgg ataagggcca tggtgaacgc
+     1021 atcatgcgat acttcttggt agttcttcta acatgaccgt gccatagccc ttaccctttg
+     1081 aagaagttaa cctatctgcc gtctcctgca cgaatagcga ctggactcgg gtattttgga
+     1141 tacctcacga aagcacttcg atcggccgaa gcatggatat ttcgccggac gggcccgaat
+     1201 agagagcctt gtatgtcggt tagtacaacg cagtcctgga gacatctacg cggatgggcc
+     1261 taggggctgg acttaacatt gggtaacgta cctggtccaa agtgaatgca aagcactttt
+     1321 acaaagcgcg ggtccccgtg ggtgtttagg gtagaagatt ggcggatgct acgaacgatc
+     1381 ccgctttgaa actatcatta catcgtgtaa aagagacact taacaaaggc caataaactg
+     1441 ccagtaagaa tcgctcagtg cggtgctggg gacgctaagt aggggcaaca gccagtgaag
+     1501 gacgtgaccg acctttctca gataagatat gctggcgtct atctaataag catagtgaaa
+     1561 aaccaaccat ttcacttaca cgaagtacat ttgcattgct agtaaagacg cctaaacaga
+     1621 agtgcccttg catgctgtat gtctatagtc cttagggaag catcagccct tctacttatt
+     1681 cgaggtctga gaaaccctgg acaagctccg aattattcaa tgtgcctgtc tccgaggtta
+     1741 gatagcgcta tgctcttaag agttgcacag aatgaccatc ctggaatgtc cctggagggg
+     1801 tctaggtatg ctgatcgaag ggtgctctaa ggacttgacg tgcgtccgag gagggtgctg
+     1861 cctccttcgc ctttagatcc aacgcggatc acatgcgcgt gagctaatag gatcaccttc
+     1921 tgctccgatt tttaccctcc tgggtcactt ccgaatgagg tagcgggcga aatataatgt
+     1981 ctccactcgt aggtgttccc tgtatgtgaa gctctatagt ggacaaaggt ttgatgaact
+     2041 agcccccgta tacgctctca ccgacggacg cgggggtctg ttatttgaag catcatacat
+     2101 gcgaaggtgc cttctcagca acgaaaggta gtgggagtgt acaagttcaa tgcgccgcca
+     2161 taggtctgag tatacaaggg gatgccccca tccacaacgg gattggctac ccggagagct
+     2221 ggctccgctc caacaaataa ttatattaac ctattggaat tccacctgca tatcagagga
+     2281 gagagacctt tacggctatt ctgtttaccg gatccatcgg taccaaggat cagaaagtga
+     2341 cacggtttga acgggttgtt gtaatacttt gagtatacct ctgacgctga gcgtgtcgtc
+     2401 ctgagcgcag actcaataac atagcagtcc gacatcgccg tgatatgtaa atgcaacgaa
+     2461 tttaggtctt gactcggtct accatgtcaa aagggtagcc agatttcagc gcgaaattga
+     2521 actttgtgtt tagtgtgggg tcctcggtta caaaatagga tcagacatgt gtgattttgg
+     2581 taacctagtc tggcagtccg acagacttcg ctatgatttg atggggccgg cctataattg
+     2641 gcttgcgcaa cccgctcatc tcgggcgtgt tttacttcct gcggtcccca cgccctattt
+     2701 tcgggccagc tgtaggtgct agagtgaatg ctggcgaata agattccccg ctatttggcg
+     2761 cctcgccaca gctctggcac tatgggggga gtttctctgt tccttaaaca gcacccgttt
+     2821 ttgaggtgta ttggtttcgg ttctgcatta ggcaattcgt accgtacaat caattacgac
+     2881 acattggcgg cagttatcag ctacccatcg caaagcacac acccacatgt atctattttt
+     2941 cgcaaattcc aaaagcttcg attgagattg catcggtagt ccctcagaca tgtcgtaatc
+     3001 gaatgcctct tgttccatga gagagagaag tatggcgcga accgctctgc ctttaatttg
+     3061 gttctaccat ccacgagttt aaggggcata accctgccca gcactttccg aggctcacgt
+     3121 tcatgctacg gtagcacctt tctgcgggtc tcacgctgtc aatatgcagg tgctgcagga
+     3181 atttgtctcc aatcgacttg agatatcgca agcatgaaat tatattagac acgccagaga
+     3241 acttgggaag cagcactggt agtgatagca acccgagtac agtaacgagt gagcttctga
+     3301 tcatgagctc tcctacggcg tcaatgcgac gaatgcccag catgcactct cgctatccat
+     3361 gcctgctagg gtggcattat gctcaggaac agttgtagct tggatatcgt ctagatgaaa
+     3421 tacctggaca ctggttagcg tcgtcaagca ccaaggacat tcacacgctc gcggtctttc
+     3481 gtctccctaa gcgttcggca gtcgggcgtg aagaggttgt aatcagacgg aacaaagcct
+     3541 gaaaaaattc cagcgacgta gtattcatga tcctgtacca tctgtagccg ccgcggcgca
+     3601 cgattgaatg taggctacta accccatccg tgttagcgat gtgagtttct accgcaacga
+     3661 atgctcaagc gaaccttctt ctttcgtccg caacccacaa gccgtggtta tgacagctaa
+     3721 attgtcccag acatcccttt attacacaag agctccagcg gaatacctag tcacagcggt
+     3781 aatgacacaa agctcttagt tagtccaggg actacttctg tctacagcac atcacactca
+     3841 ttatcagcat cagtgtagag acggagaaca tgggctatcc tataccaaga tccgccatct
+     3901 aaacatttga agtttcccgt cttctataac ttagcactcg acgctattct gctgagtgcg
+     3961 cttagtctgt agcgacttgc gaaatccata aactgagaat tgaaagagag tgcataaccg
+     4021 aaacctttgt ggcatatttc cgttgaaacg taccagaaca gccgtttagt gcggaacata
+     4081 cagtatcctg ataaagcact caacccaaca gacaccctat gccgatagcg ggatgctaac
+     4141 aagtatagtc atgatgattt ctcggacagc ggggtttggt acagctgcaa tccgtgattt
+     4201 aaattcggac ctctgcacac accgacggtt acccatatcc tctacggctg taggaagttt
+     4261 taccttggat gtcattctga tttcggcgta tc
+//
--- /dev/null	Thu Jan 01 00:00:00 1970 +0000
+++ b/test-data/init/2-step-golden_gate_plan_simulation/part_records/part_B.gb	Fri May 16 11:32:06 2025 +0000
@@ -0,0 +1,124 @@
+LOCUS       part_B                  4259 bp    DNA     circular UNK 29-OCT-2019
+DEFINITION  .
+ACCESSION   part_B
+VERSION     part_B
+KEYWORDS    "Source" "Sequence" "Freezer" "Shelf" "Box" "Concentration" "Use".
+SOURCE
+  ORGANISM  .
+            .
+FEATURES             Location/Qualifiers
+     primer_bind     531..550
+                     /label="feature"
+                     /ApEinfo_fwdcolor="#faac61"
+     terminator      3078..3135
+                     /label="another feature"
+                     /ApEinfo_fwdcolor="#c6c9d1"
+     CDS             complement(join(4216..4259,1..616))
+                     /label="yet another feature"
+                     /ApEinfo_fwdcolor="#f58a5e"
+     exon            2863..3060
+                     /label="feature"
+                     /ApEinfo_fwdcolor="#75c6a9"
+     gene            2863..3060
+                     /label="another feature"
+                     /ApEinfo_fwdcolor="#faac61"
+     terminator      4101..4195
+                     /label="yet another feature"
+                     /ApEinfo_fwdcolor="#9eafd2"
+     primer_bind     complement(3410..3429)
+                     /label="feature"
+                     /ApEinfo_fwdcolor="#faac61"
+     primer_bind     778..796
+                     /label="another feature"
+                     /ApEinfo_fwdcolor="#75c6a9"
+     misc_feature    859..862
+                     /label="yet another feature"
+                     /ApEinfo_fwdcolor="#ffef86"
+     primer_bind     complement(3159..3176)
+                     /label="feature"
+                     /ApEinfo_fwdcolor="#faac61"
+     misc_feature    863..3060
+                     /label="another feature"
+                     /ApEinfo_fwdcolor="#f58a5e"
+     rep_origin      complement(3330..3918)
+                     /label="yet another feature"
+                     /ApEinfo_fwdcolor="#84b0dc"
+     misc_feature    3061..3064
+                     /label="feature"
+                     /ApEinfo_fwdcolor="#ffef86"
+     terminator      800..843
+                     /label="another feature"
+                     /ApEinfo_fwdcolor="#85dae9"
+ORIGIN
+        1 cgggtctagc cacgcggctg aaaatgcgcc tcaccaagtt cagagagttg taatttaaag
+       61 gaccaaagaa cgtccattat gaagacacca atgagaaaag ttcattgcga tcgcagctta
+      121 gactgacgtg aagttccaac atttggcata cgtacttgtt aagttcctcc ggctatatgc
+      181 gctaggcgca ggtatattag ccggacatct gcaaggttga cgctgaagcc ttatcggtaa
+      241 tgcaagcaca acggtattgc agacacacaa taggaagtta tgttaacagg agagggtgat
+      301 gccgatgatt acgccccgcg tcgacagtac aataaaacag ctagatcatg tcgaaagtgt
+      361 aggcaaaaca ggtaggtgca ggacaggagg gttccctcaa gtcggcttgc tttatgtggc
+      421 gaatctgata cccataccgg ctatacatcg gccagggaat atcacagatt ttaaatgagc
+      481 ggagatagac ctatgggacc gcatcgatgc aagacatcgc ctacagatac ataatctgga
+      541 agacgcagat atcagtacgc tccttcctgg gaggcgtggt ccttggcacc agtcggccac
+      601 cccttagcgt ttcacctaag caacgaatcc aggactcctc ttttagcgtt tgggtgtcag
+      661 gcgcatcagg agtggttaaa tgaacgctgt acttcgcaag ataattgtga agatctctgc
+      721 tattccttaa cattaccacc aactttgcct acatatggcg taatcaaaaa tgcagcgggg
+      781 tgctcgatcg tgaaccctca atcacgatgt gctatggcgt agccacacaa catagttccg
+      841 gtctggaatt cggtctctgg agagcatacg gtgctctggg ctcacacgta cttcctcttg
+      901 tcacgcgcct ttgtagagca ttagggcgga ggtcactggg acggggatca gagagcttaa
+      961 aatcccaagt agcagtgcct aaggtgtaga atcttgtgca gatcttcgtc tggcccgaaa
+     1021 cctgggcctc cacaacaatg tcgggtcttt tataatttga aaacatcgcg ccttacccgc
+     1081 accgcgcagg acgattagac acagggggtc atgtccatgg ttcggggtaa gccaaattta
+     1141 catcgagtgt gggcttcatt gaggagaggg cgttacgata cccgttaaat gaaaacccgg
+     1201 acagtctcta actgataggc ctgataatcg ccaaatgaag tcgcaattag cagtacatga
+     1261 ctggcagata tgtcgccgga gacggtatgg gggacctatc ctaggttggc acgcgagcgc
+     1321 gaatgacgcc tatcttatcc ccctgcacgt gatggtatcg tcccaactat cttttacctc
+     1381 atcaacgttt tcctgcataa tctgcaagat ggagagtccg cgagtgcggg gagtacgaga
+     1441 tcacaaatct gccctgaaga caaagctcgc aggccgtact caggaaatag catcgactca
+     1501 cacatatcgg gaacggcaaa gagtgcatcg gccaatgcaa actattgaac gtccatgaaa
+     1561 ttgtgtcaaa ctactagtgt gtggacttgc gtcaaggcca tggcgcaata ctcaaagccc
+     1621 cggtatttat cccccgcaga gtatccgtgc ggatggagtt ccacagctct ttggacatgc
+     1681 aatgcgtggc gctacatgct ccgctgatac agaatatcta atgtctcgcc tcttgccgtc
+     1741 gaccctacaa ctactgcacg ggcagagtgg acgcgacccc tgagcggtgc agaaccttag
+     1801 tataaggcaa gggtggcacg gccgagccgc acttgctcct actaggccgt gctcgaagct
+     1861 attgatgcaa gcacagtatt cccgatttgt aaagcaaggt gcccgtagcc atacacccag
+     1921 ctactcaccg gccaatttcg accctctcta tctcagacct ccgcatattc ccaaactcct
+     1981 gctcaagtat gaaatgaccg gctcctccta aggcctgcgg acatggagtc atgcgtggaa
+     2041 tgccgtgtag gtagggtaca cacagcctta ccatgtaggg caataaatta tagactactg
+     2101 acattgattc cttgagggcc cgttcacttg tgggggaacc aggaaggcgc cgatagtcat
+     2161 cacttaaaca catgcgacgc atccatttca agaaagacac gctacgggtc tacaccgcct
+     2221 atagttctaa tttgggcccc ggtacgcaca tcgatgtact ctccattaca gcatagcaca
+     2281 tcagcggccc tagttagcgc ttctttttgt tccaacattc aatagcgggg actgcattat
+     2341 cctcacccta tttgttgcat aggtatttgg ccgtatactt gggaaagagc aaccacggga
+     2401 gtgcactaga aactgattca cccatgttat aacgcgttgc tcgcaagtcg tactgtggcc
+     2461 acgcacaggt caggcaatcg caaccatgtc ttagcagttt gtaagaagac ctttaaacat
+     2521 gtacctcaca gcaatctcgg aacttttaat tttcctgagt caatgacatg ctagctccgt
+     2581 ccacttgtaa tcaccgtcat aacacagtta gcctgcaaaa gggcgtgtac accttgccac
+     2641 tttaaagctg accgaataac ctacctacag gagatgctta gtgccacgga atgatctcgc
+     2701 aatgcttagt cttacaccca gtgaatcaac ccaagacctc gccgactgaa cggtattgag
+     2761 tccaatcccg agaggcaatt tatggccgtt agtgacagtc ggtcgctgat agaataaggc
+     2821 agactcgtct taagcgggct gctttaagag aaaatggagc cctgacgaag aagtggatga
+     2881 accaggtttt gacaacgtcc catattggta atgtaggctc gttatcaaga gataggttta
+     2941 gaaggctcaa tgctcgacgt aaaagaagtc ttaagctcta tgagccagtg atgagagcta
+     3001 attatagggc gcattcgttg gggtaaggtt gcgaattgtc atttaactaa aaccgacggc
+     3061 aatgtgagac cctgcagtcc gcctacacct ggctcactga ggcggcaacc gttatcgaag
+     3121 cagcatgtat tggtagtacc tgtcgccgat ttccttggga gtgcgctgtt gcgataacgc
+     3181 ttatttatgg tttgcgcggg atgtatctaa tgcggccgcc gcccgatcag cctgaacact
+     3241 gcggtcatga gccggtccat catgcagttc gcctgtaatt ataacctatt tgttaatggg
+     3301 gcttacagag gagcttccaa cgcatctacg agtaacggct gggatcacaa cttagccacc
+     3361 ttgtagcagg gacataccgc tttgcgacta ctgcgattct ctaacgagtc ttctgattgg
+     3421 tcctatgctc tttcaaaatc tcgataccgt agccaaccct gctgcccacc ttaaactatg
+     3481 acaggacaca ccattgtgcc aacctacacc ttaccagtag ttctgctctc caccactaat
+     3541 acgatgtcag aggccagaag gagcaccgtc aacaaacgcg ataatcaggg cggcgaagat
+     3601 ggaagtagct tgggttgtcg gtgggcaggt caggcgttag tgttatttga ataccaactg
+     3661 ttagaccaca gcgactcgaa cagtccgcaa gtcaagtgcg gtcggctttt acaggtggcg
+     3721 gattttcatt ccaccattcg ggtctaggtg tggtactaac cgcggtcata cgtggagttg
+     3781 aaccgcctga cgcactaagc tatgcgggca acaatatcgc caaagtcatt gtgttgggtt
+     3841 ttcacaacag tcacttcgct cacggccgaa ttaaatatct ctaactatta agccattttc
+     3901 caaccatcgg ctatcccagc ggttcaatcc gaatcgttac cagtgggtag ctgcagagga
+     3961 tcctaagggc gggtcccgct tactgtaact cgtcatgtct cgtggtctac caattcggtt
+     4021 agtattcgtg ccatgtatct cataagggtt gcagtttcgt cattgtcgta gttccttaat
+     4081 ggactggtac gacccggttg ttatacaacc atcaatcgtt aacggacatt agtgagccga
+     4141 ggagaagacc catcagcgga taacccgcca ttatcaccga tactgacata tgagtgccat
+     4201 actgggactg gcttcacgtg agggacctca aagtgagtcg tacaaggcag ctcctcaaa
+//
--- /dev/null	Thu Jan 01 00:00:00 1970 +0000
+++ b/test-data/init/2-step-golden_gate_plan_simulation/part_records/part_C.gb	Fri May 16 11:32:06 2025 +0000
@@ -0,0 +1,99 @@
+LOCUS       part_C                  3423 bp    DNA     linear   UNK 20-NOV-2019
+DEFINITION  .
+ACCESSION   part_C
+VERSION     part_C
+KEYWORDS    .
+SOURCE
+  ORGANISM  .
+            .
+FEATURES             Location/Qualifiers
+     CDS             18..3275
+                     /label="feature"
+                     /ApEinfo_fwdcolor="#ffef86"
+     CDS             3276..3404
+                     /label="another feature"
+                     /ApEinfo_fwdcolor="#ffef86"
+     misc_feature    2486
+                     /label="yet another feature"
+                     /ApEinfo_fwdcolor="#b1ff67"
+     misc_feature    3411..3423
+                     /label="feature"
+                     /ApEinfo_fwdcolor="#faac61"
+     misc_feature    3407..3410
+                     /label="another feature"
+                     /ApEinfo_fwdcolor="#f8d3a9"
+     misc_feature    14..17
+                     /label="yet another feature"
+                     /ApEinfo_fwdcolor="#f8d3a9"
+     misc_feature    1..13
+                     /label="feature"
+                     /ApEinfo_fwdcolor="#faac61"
+     misc_feature    3131
+                     /label="another feature"
+                     /ApEinfo_fwdcolor="#b1ff67"
+     misc_feature    2078
+                     /label="yet another feature"
+                     /ApEinfo_fwdcolor="#b1ff67"
+     misc_feature    14
+                     /label="feature"
+                     /ApEinfo_fwdcolor="#b1ff67"
+ORIGIN
+        1 tggctaggtc tccaatggtt tcaccggagc tgagatcgca ttaaagtcac actacgaatt
+       61 atttgtcccc gcggctccag agacaaattt ctaggagtgg gttcatggag aaccgtgaca
+      121 agcatggtag cttcaaatag cgtcatcgga tcttaaagtg attgtgacat atatgggatt
+      181 gcgcgtctct cttacacaag ctagtgtgcg cgaggtgctg aacacctatt acgtcaactc
+      241 ccgggatccc ggcgggttac agagacataa gcagggtgtc catcattaac ttcgatgttg
+      301 agcccgtgcc ctgatcaaac acctctcgta gtagtgggtg ccggccgtgt attattttgg
+      361 gggagaggat gcgccctaag caatttcttt ccatcggcca gccattcgac gccggcacgc
+      421 aagttgttgc gggcactgtt gcagttcccg tactagagtc tcaagtctag aggtaccagc
+      481 atcaggaaga tgggtacttc gtgtggatct tctcctgaac ctgaaacctg aagagctaaa
+      541 gcgcgtcgcg ctgccatacg ataagtcgct ctcatttccg gaagacgtcg ttgggtgatg
+      601 gcgaacaatc gcgaaacgaa aatcgcggtc ggtatgttga ttcaagacgg gctacgggcg
+      661 ggttactaac aggtgcgcag aaatgtgatg ggtcacttga ccatgaactt tcgcgccgtc
+      721 gcttctgtgg actggccggc tccctgatag tgcactagcc cgttgatatg cccattacca
+      781 tttggcggcg cagtgtgcca gcgggattaa gatgcgtggc gtacaactat ccgcactttg
+      841 ctgacgcaca aaggcaactg atggacagcc ttcgggcatt cgactggttg gctgagttcg
+      901 cctgcctatt aatatgcttg tggaaattga tttacagcgc ctacttctac ttaggtgtac
+      961 ctatttacgg cacagggata aaggctgaca gaaaagtcct ggacaggtca taggtagttg
+     1021 tcagacctac aatggtataa cttgagagtc ctgtaccgca catgcggttg tagctagatg
+     1081 tccagaagac cgtagctagc gacgagtggg ttgcacgcgc attttgggaa ggggctgcgc
+     1141 gagggtgggg tcacgggtta ttccatttct aaatgctaaa ccagcagttg ctttagttct
+     1201 gacctagcag gcatgtcata tgtatggcta gattattagt acaatgcagg actaagaaag
+     1261 cctgagactt aaatgcgttg gtttttcagc cgacgggccg ggagggcaga tggccgaatg
+     1321 cgcactgagg agtgcattgc gagggaatag gcggaccacc aggtcccctc acatactgtg
+     1381 gataaaccta cccagggaca actcacgcca tcattttcaa gagtagcact actttccact
+     1441 aagtacggtt tgtcgagagc cggtggcacc gtgcgacgag cttgtgggca ctaggcgaac
+     1501 cgggttatat aggactgcct tgcggtgcgg gaatacttta ccccgtggag aggccataaa
+     1561 agcttacatt tattgtagcc gctagcggtt tcgacgcgct caagtggggc tttatcttag
+     1621 agtatcaaat aatgccctct cagcttcatc ttgatttttg tgtttggggt agtgtatccg
+     1681 atgggtcacc ttcttgacct tggggagctc catccatcgt accaatactc cgtttctttg
+     1741 tgttgcctac cgagtaatcg aataccgcac gagggctaga atctaattta aggtgggtct
+     1801 tatccctgtt gtttggacct aacgctgtaa caaatcactt ccgcgacggg tgtcattacg
+     1861 tcttctatcc gccaccggtt caacagtgcg tcgaatgcca agtccctatt acccgcattg
+     1921 taaagccatt acaatacctc cggtgatata attgattgcc ggttggcaag ggatcatctg
+     1981 tacgggccgc gattgattgc tgataaggaa cggcggtaag gaacgtatcg cgtacgaggt
+     2041 tgtacactgg aaccgctaaa caagcggtat cgctaaatta ccggcgatta tatcaaggga
+     2101 atcttaggta gcacgaagcc ctacgccctg gaaacaggat cggcgcgagg ccgtggacat
+     2161 attagcctac gtttttttac acccagattt ccgacgatgt ccacagctaa ggctatccta
+     2221 aaccgcaaac acatataacc gcagtataaa gcacgggatg attccttggc catcttgcaa
+     2281 gcagtgcaag gcaattctgg tgataggggc aaggcagtga accgagtggt cagcgtattg
+     2341 tgaccctgca attgtcatgg cagataattg tttatgaacc tgtttcacac acccatccct
+     2401 tggatctcca gcgtagttac taatagtacg atttcctggt gttctgtcac ccgccttgct
+     2461 gccttcacgc ctgccccacg ttttgctgtc cactgaatat cgctctaatt aataggtgtc
+     2521 acactgtatc aggtaagtcc attccgggtg ctattggatc attcctgaga tgtaccaccg
+     2581 atcccatagg cgttaggtct tacatctgga gtgaaaaaga tcagcatcga actataggta
+     2641 gataaaggtc atgactgtta acagagaatc gttcctatcg caaccttcac taactggaag
+     2701 gcacccccac actttgatta gtaagcccct agcgaatgta gtgatccaag aacatcgagt
+     2761 atactttagc tctcggttca ggcatgtatg caatcgacca cccttccgtt cagagtactc
+     2821 tcaaccagca gatttctaaa ctttatagcc tccgcccact aaaattgcct tatctcaggt
+     2881 tgactcttgg atgtagctgt aatctaacat acacatggag ctgcggcaaa ttatcgtacg
+     2941 tccaaaccac caccggatca gtggcgatac tattctcgca aaaaagccat ccagcattgg
+     3001 aacaagtgtt aaccagcatt tttctgagtc ccccggaaag aaagttgact acactacatc
+     3061 cataaatgct agagtgtgga ttcgccatgt gttacaacgg tcaaccgaaa ggttagcatg
+     3121 atacttcgtt gttcaatcgg acgttcgagc gccctccctg tttatcactt gatccccctt
+     3181 ttgaaacatg tgcgctgcga cgcagggctg ggagagtcac cggaaaccaa aagcccgacc
+     3241 tcggacgtgt agggccctcc gtttgccatc aatggcgatg taggattctc ttttaataca
+     3301 acgttcactc aattaacgtc ttggtataag cgtcgaacgt gaccgaggtt gacaccagtg
+     3361 tcacggctgc gccggggttt gttgctccgc gtgtacaggg tattggttcg tgagacctag
+     3421 cca
+//
--- /dev/null	Thu Jan 01 00:00:00 1970 +0000
+++ b/test-data/init/2-step-golden_gate_plan_simulation/part_records/part_D.gb	Fri May 16 11:32:06 2025 +0000
@@ -0,0 +1,96 @@
+LOCUS       part_D                  2682 bp    DNA     circular UNK 30-OCT-2019
+DEFINITION  .
+ACCESSION   part_D
+VERSION     part_D
+KEYWORDS    "Source:Subcloned from vector Andrew" "Sequence" "Freezer" "Shelf"
+            "Box:Mobius box" "Concentration" "Use:Mobius".
+SOURCE
+  ORGANISM  .
+            .
+FEATURES             Location/Qualifiers
+     rep_origin      complement(262..850)
+                     /label="feature"
+                     /ApEinfo_fwdcolor="#ffef86"
+     misc_feature    2642..2671
+                     /label="another feature"
+                     /ApEinfo_fwdcolor="#b1ff67"
+     terminator      1991..2034
+                     /label="yet another feature"
+                     /ApEinfo_fwdcolor="#c6c9d1"
+     CDS             2054..2566
+                     /label="feature"
+                     /ApEinfo_fwdcolor="#84b0dc"
+     misc_feature    1919..1938
+                     /label="another feature"
+                     /ApEinfo_fwdcolor="#f58a5e"
+     misc_feature    2050..2053
+                     /label="yet another feature"
+                     /ApEinfo_fwdcolor="#f8d3a9"
+     misc_feature    2576..2641
+                     /label="feature"
+                     /ApEinfo_fwdcolor="#b7e6d7"
+     terminator      10..67
+                     /label="another feature"
+                     /ApEinfo_fwdcolor="#c6c9d1"
+     misc_feature    143..162
+                     /label="yet another feature"
+                     /ApEinfo_fwdcolor="#75c6a9"
+     misc_feature    2675..2678
+                     /label="feature"
+                     /ApEinfo_fwdcolor="#f8d3a9"
+     CDS             2618..2641
+                     /label="another feature"
+                     /ApEinfo_fwdcolor="#84b0dc"
+     CDS             complement(1148..1807)
+                     /label="yet another feature"
+                     /ApEinfo_fwdcolor="#b7e6d7"
+     terminator      1033..1127
+                     /label="feature"
+                     /ApEinfo_fwdcolor="#c6c9d1"
+ORIGIN
+        1 accctgcagt ccgtgaatta agaccaatcc actggagctc tatacaggac atcagcgatc
+       61 ggtcgagtaa aaccgagttt ctggactccc ttagtctgag aattgtacct tattacgaat
+      121 ccggaaatga agtgcgctca taaaatcttg atcgctaact gttttccgct ttttgaacct
+      181 acagtcagct atttcgccgc aagcgaggtt tatccccttt tgtgtgtgtc agcgggcgaa
+      241 cgtggaggac aattatgacg aatgcctaat aaccaacgta ggcttggctg gtgaggacat
+      301 tgcccttccc cttctactaa ccagtgttgt tcagatcatg taccaagtgc agtaatgcta
+      361 atcccctgaa ttctgacgtt ggatttggag cgtgattggc aattatccgc tgcaaggcgt
+      421 agtatcgcta tctgggaaaa cttagggttg caagcaaggt catcgcccgt ctctagatcc
+      481 gacgggagcc tcaccctgca tgaggaagtc ctaatccgct ctaaacaaga gctgaacact
+      541 ggatgtctcg cagtagattt gctagaatgc aatgctggct cgtgtgcagc ctcaaggtca
+      601 ccatgcttcc gttaaattcc acgctctccg agtctgctgg ttcgggataa atctacgtga
+      661 cattcgcgag gtcccggcct gtagatcgtc tcggcaggag agaacacggt tgatccccca
+      721 cgcggaaccg atagatgcca ggctagatga tgactgaagg tagtttgtac gagtgacctc
+      781 tctagccaag tattttcccg tctcttaagt tatagccgct ctcattccgg gttgtgatat
+      841 ccttcatatc cactctctgt aaaatgctgg gttgttcttc tctccacggt cagggaatcg
+      901 cctcttttcg gataaacgac attatttcgc gccacagaac ggtttggggg tcgaaggacc
+      961 ctagactttg ggtatcccac tcttaccgga tggtaccgct atctccccag ggtccatcgg
+     1021 aatggctagc cacgttaccc ttatctgtca gtatcagtct cagacttaag tataccacgg
+     1081 tagcgacagc tgtcttttaa tggcccgggc agggagccgg gcccaccgtc catggtccac
+     1141 tgtaagggta tctgcaacct tcgccgagct tcttccccaa ggaggtagta ccttaccaaa
+     1201 cttccgagtc agtatcgtca aaggggcccc tagggctcac accatcgagt ttccgcggct
+     1261 taccagtcta gcctgatatg tttcaggtca ggaaataaga ggtatagccc cgtggacacg
+     1321 tactgttcga gcggctagat gtaggttgag ttaagtacag tagacgcgtt ggataccgtc
+     1381 gaacattact ccgtctgcca agggtagccg agtacttctt ccggctcggc cattccgact
+     1441 aagttagttt cgaattgacg tgccaaagcg tggctcccag tcatttgtcc ttaaattaaa
+     1501 cataagtttt ttacctgctc gcgtgccggc cgcttgaggg ggcagcaaga agtcggttca
+     1561 aatggggtgt taagaccggt gttgcaagcg gaccatccag agttagcgtc ctcgacgaaa
+     1621 cgttaacaat cgtgagatta gaggtcgaat atccccttcg tagggggttt tattgtgcaa
+     1681 gatgcgcaaa tgaaccccaa ccttgcgggc ctgtagcgaa caggcgaaaa ggtccaatac
+     1741 ggcgcccgat gcaccgtaaa acaggtcctc taactgtgtg ttctacgctc tccggatcct
+     1801 gtatataaga acgaatcccc ttttcctagg gcccggccgc gtagacccag tacacttgac
+     1861 tttcacgaag atccatccta ctcccatacg cttgagagtg ccaacgtagt ttgtaaccga
+     1921 ccttgcctcg gctagaaagg cattttgtcg catgtggcca gcctgtcagg gcgtgctcta
+     1981 ggcttgacga ttagtgctac gggatgattc gtaaccgagc tgacgggacg cctctggaat
+     2041 tcggtctctt tcgatggtgc ctcctctacg tagatctact ggataaccgt ccccaatatc
+     2101 cgcttcccaa cgtagattgc cgacaggcat aagcttcggg ggcgcaaagg ccgacgtccg
+     2161 cattgcagtg tagctttgtg agcaggaagt gtgatagtct ttcgattatt aaagtctgag
+     2221 ctgaatgaaa aaaggtccaa cgaatggagg acgcgaagac atgggtgtct cttatggccc
+     2281 gagcgggagt aatggcggtt cgtacataaa ggctgaaagg attctggcgt tagctgtctt
+     2341 acgttggatt ggcccttcaa attatcgatg ttagctgatt cggtgtaccg ggcgaggaaa
+     2401 gcgctctcag aacaacttca tatacgaggt tcgactataa tggtctaagc tcctgggcta
+     2461 gtctcaagaa gcgggtacct ttagtagcac gtatcgacgg caaagcaaag aataaaaact
+     2521 tggctttgca tcgtgcaaag atttctaact aggttgttta agggctggta tctatgtccc
+     2581 gctataacag cgcgcctaca gtagaagttt aaccatgaca tacctttgaa gtgttcgtat
+     2641 cacacacaag gaaggagcat gtggacacca ctgagctttg ag
+//
--- /dev/null	Thu Jan 01 00:00:00 1970 +0000
+++ b/test-data/init/2-step-golden_gate_plan_simulation/part_records/part_E.gb	Fri May 16 11:32:06 2025 +0000
@@ -0,0 +1,38 @@
+LOCUS       part_E                   347 bp    DNA     linear   UNK 20-OCT-2019
+DEFINITION  .
+ACCESSION   part_E
+VERSION     part_E
+KEYWORDS    .
+SOURCE
+  ORGANISM  .
+            .
+FEATURES             Location/Qualifiers
+     3'UTR           21..330
+                     /label="feature"
+                     /ApEinfo_fwdcolor="#c6c9d1"
+     misc_feature    1..13
+                     /label="another feature"
+                     /ApEinfo_fwdcolor="#faac61"
+     misc_feature    18..20
+                     /label="yet another feature"
+                     /ApEinfo_fwdcolor="#b1ff67"
+     misc_feature    14..17
+                     /label="feature"
+                     /ApEinfo_fwdcolor="#b4abac"
+     misc_feature    331..334
+                     /label="another feature"
+                     /ApEinfo_fwdcolor="#f8d3a9"
+     misc_feature    14..17
+                     /label="yet another feature"
+                     /ApEinfo_fwdcolor="#f8d3a9"
+     misc_feature    335..347
+                     /label="feature"
+                     /ApEinfo_fwdcolor="#faac61"
+ORIGIN
+        1 tggctaggtc tccgctttga tcagcacgcg tctcagagtt tcagggggac ccaaattact
+       61 ggtcctcaat tgggacgcga ccgcatctcc ccacgaaagc ttatggggat tgcccactgc
+      121 ccagcttcaa atctgaaggt tcggcttatt gacagggtct aacacgcagc tcaactgctc
+      181 gaggttagag gcgtaatgac gggccccgat agccttctac gattacgtcc agcaggaacc
+      241 ccacagcttt tccctacgtc taacaccgtg aaagcaaaac tgtctgccct tttacatggt
+      301 ctttaaggaa tctctgcact tatgttatta ggtatgagac ctagcca
+//
--- /dev/null	Thu Jan 01 00:00:00 1970 +0000
+++ b/test-data/init/2-step-golden_gate_plan_simulation/part_records/part_F.gb	Fri May 16 11:32:06 2025 +0000
@@ -0,0 +1,74 @@
+LOCUS       part_F                  2470 bp    DNA     circular UNK 20-OCT-2019
+DEFINITION  .
+ACCESSION   part_F
+VERSION     part_F
+KEYWORDS    .
+SOURCE
+  ORGANISM  .
+            .
+FEATURES             Location/Qualifiers
+     terminator      1991..2034
+                     /label="feature"
+                     /ApEinfo_fwdcolor="#c6c9d1"
+     terminator      10..67
+                     /label="another feature"
+                     /ApEinfo_fwdcolor="#c6c9d1"
+     rep_origin      complement(262..850)
+                     /label="yet another feature"
+                     /ApEinfo_fwdcolor="#ffef86"
+     CDS             complement(1148..1807)
+                     /label="feature"
+                     /ApEinfo_fwdcolor="#b7e6d7"
+     misc_feature    2054..2462
+                     /label="another feature"
+                     /ApEinfo_fwdcolor="#faac61"
+     primer_bind     complement(2351..2371)
+                     /label="yet another feature"
+                     /ApEinfo_fwdcolor="#85dae9"
+     terminator      1033..1127
+                     /label="feature"
+                     /ApEinfo_fwdcolor="#c6c9d1"
+ORIGIN
+        1 accctgcagt ccgctcacgg accgcaagga cgggctaatt aggaggcaac gccgatgggg
+       61 ccgcagttca gcgctgcaat gtttgctgaa cagggatgtc acgcatactc gtctacaccg
+      121 cccgtgaccc gttatcacgg ttgaagtgtc gaggactagt gctgccgctg cgtgagggac
+      181 acaagctgct atttgtccat acgccatgtg ctccgagctc atgctgccat gagacaatga
+      241 gacatgtcgc caataatcga gtgacgagtc agaatgacct ggctccgcat aaccgttcaa
+      301 agttattgac aacgcatctt tcgtagttcg tgcagcagcg gtctttcttc tatagccgac
+      361 tagatgttaa gggactcctg gataccgcta gttttaccct ctccaggaag ccagcgaggg
+      421 cgtgccgcaa gtcccaatag ataccgggca tgatcaaggg gccctgtgct ctgagtctgg
+      481 aggcgacagt gcgctgcagc tcagaggtgg ttattgcgaa ccggcaccgc tggacagcac
+      541 ccacggggac acgtaagtaa tttagggtct gggccaacgg ctcagcgcca gtaggattaa
+      601 caaactcgac taatcaatgt gccagctact tccgccgggt ctgacggggc ggcacccatt
+      661 accatgtgta ctgaataggg attccgagcg accgtaaagg cgttcctaag tgtcatatac
+      721 tggcaactag aggcactcac atcggggtta agggcccacc gtaatggcca cgcaggatac
+      781 caattggccg ggtgaggatc tattcacgcc gatggggagt tctaagcccg agttattggt
+      841 gctagtggct tggacctgtg tgtcgatgat gcgcgatata gaggcgcggg actagctggg
+      901 gtccacaggt gctatgttgg gtgcgctcta tggacgtccg gaaagagact aatgcaacgg
+      961 tatggcatca agcgcgaccg atggggagac tggaaattgt gaaatagtgt actggcgcga
+     1021 tcattaaata ttgcatacgc tgtccgttat gacctagagg ggattatttg aacgagaggt
+     1081 cttgggaact gcattggaga tggtcagatg gaatgcgaaa tgtatcacca cgggcggccg
+     1141 aaggggagac agactatccc tagttggctt cggtaaccgt aatcagatgg aacggcgggt
+     1201 aatgctgata ccgagcgctc gtacggcgcg tggtgatgac acggtctgat gtcgtagcaa
+     1261 acgagccggt cctcgtacaa caggctcaca tctcaatcac gcataccaac cgattacata
+     1321 acgcgatcta tatttgggga actctactta ctaccctgtc tgcagagtgc gttctatgat
+     1381 cctcccctac gtgacggcca acgattagtc ggcctaggtc taacggataa aaggactccc
+     1441 cagtacatgt gaccatatga gccaggccgt cgagcgcgac cactccccag cctatagtga
+     1501 ggaggagcgg tattcggtta aagtttagct agcgactttt ttgtcaccga agtagggacg
+     1561 ggcatattgt ttacccttaa agcggggatc aatccattgg ggtcggcagt cataaaagga
+     1621 tctaagcccc caaagcgcat ggtaaggtac tcccgggttt cccgaaatct aggcaagtct
+     1681 cggtgggtgt cagcctgacg agtagggcac gttaccgagg ccacggtgct tgatgactac
+     1741 gggtgaatcg aaccgatcaa acgcacagca tctaaaccct ggtgtactgg tccacagggg
+     1801 gacaagtctt tgaagtgtcg cttcagatga cggccgcggg ccaatctgaa ttgttagaca
+     1861 ccgacagtag ggtgtgcaac tcgctcgggc aagagtgtaa aggcacatcc tccccgaggt
+     1921 aagttatacc gctctaacgg cgcgggcagc ttttcaactc aacacttccg cggttcagtc
+     1981 ctgagcatta ggctgcatgt ctatcacaag aggtgcgggg aacgacaagg gctctggaat
+     2041 tcggtctctg gtaagctccc ataagagcac cacttcgtgt accttgctaa ctcccttcat
+     2101 ccccacccgc gaaaacttaa gacgtcaccc ctgttattat cccgtgcact cctaaagtgc
+     2161 gatgggcaag aacgcaaaca attgtctgag atttatatgg gcggcggaca tagtcagaga
+     2221 gccttatata atctcccacg tcttgccagt ccgagttatg agaaacccgg gaccgatgac
+     2281 gctattacgg tcgcccagcg aggttcaaca gagcgaggca taggagtcat tacgcgtgtt
+     2341 agcttcaaca tgcgtggaag tgaaacggat ctataaaacg gcgtggagtc atcagcttga
+     2401 gcagatctaa cttactcgcc acgcgcgcaa atcgtctttc gctgtccacg ttatacgtaa
+     2461 ctcgcttgag
+//
--- /dev/null	Thu Jan 01 00:00:00 1970 +0000
+++ b/test-data/init/2-step-golden_gate_plan_simulation/part_records/part_G.gb	Fri May 16 11:32:06 2025 +0000
@@ -0,0 +1,36 @@
+LOCUS       part_G                  1119 bp    DNA     linear   UNK 25-OCT-2019
+DEFINITION  .
+ACCESSION   part_G
+VERSION     part_G
+KEYWORDS    .
+SOURCE
+  ORGANISM  .
+            .
+FEATURES             Location/Qualifiers
+     GoldenGate      1..13
+                     /label="feature"
+                     /ApEinfo_fwdcolor="#faac61"
+     GoldenGate      1107..1119
+                     /label="another feature"
+                     /ApEinfo_fwdcolor="#faac61"
+ORIGIN
+        1 tggctaggtc tccggaggaa cttctatggg acgaaagatg cgcagctcga caaatctcaa
+       61 attggaaacc gtctaaggtc tttgagccca cgctaggcca ccgaatagtt gcgagctcgt
+      121 gggcaattgc tggctagcgg tttgtatcgt atacgtaaca agagattgcg ccggattcat
+      181 tcgtgtgggg tgctttcaca tcggaatact caagagtggg ggtttgcgct ttaatatgac
+      241 ggcctcatgc accccaaaaa taagagcgcc aatttcatcg accacattcc ggacaattct
+      301 gacttccctg tcggatcgac cctcgctcac aactcctaga actccaagac ggtaggacgt
+      361 cagccgaaaa ggaggagtga cgacgggccc tcctagctga agcaatgggg ggcgtcgacc
+      421 ctagcctggt gtgggacttc ggagggtcgg gcgtgtggcc attcctgcac gaggggccct
+      481 tgcagtatcg aactttgacg agaaagtggg gggcgaccta taaacatagc ggagttcaat
+      541 actcctgcaa gtgcatgatg acgttcagcg ttggcacatc gaacgcgtcg ctacacttgc
+      601 tcaccggaag gcaaaataga ccggcagctg gcccgcacgg acgtctagac tcctacgctg
+      661 tcaaatgcac gatgactatt agcatgcgga attcgaggcg gccggtacat cgagacacgc
+      721 tggtcttaat acctgtgtta tgtcaaaaca agtgtctcgg cggctttgta ctacgctgtg
+      781 aatgcgcatg atgttgcgag aagctgaacg ttggtagcag tctacaacag aaccgacgag
+      841 ctacggacgg gttacagcag gatcccctct taaggcatta ttcgacgact ccaggttcta
+      901 accgatcagt aattgcctcg gatggtcgta cgtgttaacc gagacagcaa ggcaccacat
+      961 agacaactgc atagggcgcc tacaggtcca caatcagggt ggcccaagat cctcaaagac
+     1021 ttgttgcagt ctctgcttat tccgtttaac acgttgtgtg agctctagct tactacctca
+     1081 tcggtgtcgg gagtgattta ggaatgtgag acctagcca
+//
--- /dev/null	Thu Jan 01 00:00:00 1970 +0000
+++ b/test-data/init/2-step-golden_gate_plan_simulation/part_records/part_H.gb	Fri May 16 11:32:06 2025 +0000
@@ -0,0 +1,109 @@
+LOCUS       part_H                  4246 bp    DNA     circular UNK 07-NOV-2019
+DEFINITION  .
+ACCESSION   part_H
+VERSION     part_H
+KEYWORDS    "creator:militzis" "marker:SmR".
+SOURCE
+  ORGANISM  .
+            .
+FEATURES             Location/Qualifiers
+     primer_bind     1966..1982
+                     /label="feature"
+                     /ApEinfo_fwdcolor="#a020f0"
+     terminator      3774..3860
+                     /label="another feature"
+                     /ApEinfo_fwdcolor="#c6c9d1"
+     rep_origin      complement(63..651)
+                     /label="yet another feature"
+                     /ApEinfo_fwdcolor="#ffef86"
+     CDS             2015..3667
+                     /label="feature"
+                     /ApEinfo_fwdcolor="#ffef86"
+     promoter        1987..2005
+                     /label="another feature"
+                     /ApEinfo_fwdcolor="#c6c9d1"
+     CDS             complement(744..1535)
+                     /label="yet another feature"
+                     /ApEinfo_fwdcolor="#b7e6d7"
+     misc_feature    3667..3670
+                     /label="feature"
+                     /ApEinfo_fwdcolor="#ff0000"
+     terminator      3952..3979
+                     /label="another feature"
+                     /ApEinfo_fwdcolor="#c6c9d1"
+     primer_bind     complement(3694..3710)
+                     /label="yet another feature"
+                     /ApEinfo_fwdcolor="#a020f0"
+ORIGIN
+        1 aacatggatc cgttacacaa ggtctactcc gcgatgtggg ctcaccccct agatcccttt
+       61 tcctaccgcc cgatcgcaaa ctacgcgtag cttcacggct ctctgtctgt cggctgacct
+      121 gcggctcatt tttcatccat ttagtatagg ttgcaagggg tgtgactgat ttctctacat
+      181 aaagaagcct atagtaccac atgcaatgcc gatccggtga gtgctgtagt ccttattccg
+      241 gcttggtggc ctcctgccac ttaggatcgc aacggaattc tagttcctaa cgtcccttct
+      301 acctgattaa gtgagagaaa acggaaccaa cctaagacat ctatgcatcg atgttttaca
+      361 atgacgagag tgctccatgg ttcatactgg ggacatagtt tcgggcattt aggcccgcaa
+      421 gagttcgggt atctagtttt tccgtacgaa aaacaccacc ttagaacagg tcacacgagt
+      481 acagagagta aacccgtaat gttttcaccc attccccgat ttgactgcaa acaaacaagt
+      541 ctccccgtat cgcttcattg ttttatcaac gggggcggaa tcgtagacca ataattaacg
+      601 acaactctag gcttttcaac cgacgggggc aaagtctgaa atgcctgaga aaggcacaac
+      661 gacggtggga ggggcccctg caaatattgt tctagcactc caggattcac accaacctcg
+      721 gggccagcca ttccggtact tttggttata cggcaggata ccacgtccct aagcggagta
+      781 tacacggagt tgccttagcc aggtacccgc ttaaccgtcc aactcccctg agtggtacgt
+      841 ccatcacgcc gcgtaaacgg tttccaaaag agtaagctta ggcattcctc acctgtcacg
+      901 tccctcttaa gatccctgcc tcgaactggg atcttgtaaa aatgtggcca tgggagcagg
+      961 agttcatgtg gggcgacggc gatcggacgc ccctttaaac cagagccctt gacgctagga
+     1021 gatcagtaga gttacccgga atgagatctc taatctaagt ttgatacgac gaaagcggcc
+     1081 tgacgggcgc tactcatgct cttagaatcc gtcacttatt ctgccacaga tccgaggtac
+     1141 tgtggatgtt atttgcggag actggcctcg gattaggggt actaagtccg agatgtcatg
+     1201 agttaagccc aattcactag ttgcattgtc aacgagtgga cctccaaaac gatgttaggg
+     1261 tcactacccc aagcgagcac ctccgctagg accacacacc cccactttca aggtattttg
+     1321 ttcgcatcac ataccgtctt ccctttgcgg tctaatagtg aagcttggga caaggaacgg
+     1381 ccagtcgcag caatactacg agtgagagtc ctaggcgcaa ctacgtaggt tccgcaaacg
+     1441 tgttgtggat tactgttgag gtttgagttt atccggaggg ctgtgtaaga attaccagct
+     1501 agtcaaaagc cctgcatggc ctgatctcat tagatacctc ggccgggccg aggcaaatcc
+     1561 gtgaacaaaa accatgcatt tattctatca tagaaacatt tgttacacat ctactggccg
+     1621 tgtgccgtga acaagaactc aatttagtta tcaagggact gctgtaaacg gagccgcgtc
+     1681 acccgcgtgc acacgtgtag tgcttacgcc ggcccccgtc cagcgacacc gtagtcaagt
+     1741 aaaaaatgcg tattcacgac ctcacgtacc cgtttcggag ggtgccttga cgcatagagt
+     1801 tgtctgtgtg attggaattt gtaaggggtc cgcccatgta aaatagagcc catgtcttac
+     1861 gaggacatga ggaaacatag gttctggtgg ccttccaaga agctgcctct acactccttc
+     1921 tctttaatca ccgaaaacct taccttgaga ggacgtcatt cgtcaaaaca aaatattggt
+     1981 ggcaaattaa gattaccact ataggcggtc tcaaatggaa gacgcgttta gtcttcggcc
+     2041 cccagacggc accggcagag ccactgccaa tgccttttac gctgaactct tcgactttgg
+     2101 catgtgcgac tgactatacg ccgatggccc taccctgcag cggaaaggca cagggccaaa
+     2161 aacagtggaa gcgcaccgct agagctttac taaatccttt agggtgaacc ggtgttcagt
+     2221 caacagaaac atatgactag tccttaatgg cactactaaa ggcggcccat ctcttttgta
+     2281 ggtcacgtct catcgtttag caagcgtccg ccatccgagg agtatcctag tacgtgagag
+     2341 ggtgttttac ctcatcacat ggtttttggc tagatgtggc agatgccagc tgatacctta
+     2401 caacccgcta taacggtttc tggatcgacg atacaacctg cttcggcata tcataatggc
+     2461 ggcctcatag gacttccaat catggttatg cgagtttgat gtgttgaaga ttgtgagggg
+     2521 aaaccttttt ccgagtacgt tgaatctgcg actgatggtg aacaactcat cgagagggat
+     2581 gtgcgggcag tctccttgat gcgcgaaaag gagtcgcgac cgcgtgttcg tgacgcactt
+     2641 gatgctagac cgtaggggct cattatctcc tgaaacagta gctagctttt ggtgtccgag
+     2701 tcagcttagg cacagtaatt gaaaagaagg aaatgcgtga aaactaaacg tagacactcc
+     2761 ttgctaagaa ttccctggtc tttttcgagc atagactacc gtaggtaaaa ggcttgtcgt
+     2821 gtcacaaata gacttgatct gttcggcata tacacatcct actgcttcag taaccaagga
+     2881 cgattctccg gccattggac tgtgggacca cccgcgttca aacggaatcc tctacgaacg
+     2941 gttaagaaag gagcccactg cttgcggaga catatcgttg ctgagtggta caccggtgag
+     3001 tcaaaaagta ctgacactac tggtggactc tcgggtacga tgtgtggggt attggcatac
+     3061 tatggcgcta agcgtggaat agtgtttcca atagcccttt acctaagaag cattctgaca
+     3121 catgggttgg acttttacac agacctataa ctcgtatccg gcctggtgat gtatgtccgc
+     3181 ttatcactga atgcaggatt ccgccaattc cgctcgcggg ttctcggaca acgggccatg
+     3241 gagatggatc aatgagccat gttgattacc atttcactac acacggttag tcaattccgg
+     3301 agatcataat tcgacaattg aatatgcgtg atacgctttc tgttaccagg atcgttgcta
+     3361 attagtttcc aatgtcacag tgttgggcgg cgaggtatca cggcgctctg ggtagaatgg
+     3421 cggtgcctga ctggacctca taactggtaa catacctatg accaaaggag gtcagacacc
+     3481 gatgagtcgg tgacatgggc ggtcacagcg tgccctgcat agtaatacag ctcgtttcta
+     3541 gacatttgtc ctaattcgcc acacaagtac gagagcgggg gtaacccatc accatcgtgc
+     3601 ccgtaggtac ctaatcttca tcgagcgcta ttgttaaagt ggactcaggg atcggcatct
+     3661 cgtgtagctt tgagaccggg gcccgaggat gtatgccttg catggaactt gactaatctc
+     3721 agtaatactg gccgtgtatt ggtgtgtctt ccttggcctc acatgggaac attaccacat
+     3781 ataacatcat ggggttcagt ctattactaa cgaagtcact aaaacgtact cgacggcgca
+     3841 tgcgagtatc gacgtagcgg ttggttacct taagctgact tggtctatgc atacactgat
+     3901 tagcttgtag cggtggcctt cgacgtctgt atcgtaggcg ttgtttgttg caaacacaaa
+     3961 cgacctagcg tcaagacccc ttctagagaa agagagtgac gactcttgtc agttcaactc
+     4021 tgtggtacgc cgctgcgaga tgcgcgttgc cacggcagac cccatgaact cgttcaagct
+     4081 aaactctagt tcacgctaca tgtgtttgtt tctgcgtacg caaaagtact aggtacagct
+     4141 atcttttggg ccccaagtgg gaccacactt tcggtcttcc tagcaaggct ataaaaccgt
+     4201 atggcatgag tccttgatct gcatttcgtt tagacagagc gagatg
+//
--- /dev/null	Thu Jan 01 00:00:00 1970 +0000
+++ b/test-data/init/2-step-golden_gate_plan_simulation/part_records/part_I.gb	Fri May 16 11:32:06 2025 +0000
@@ -0,0 +1,69 @@
+LOCUS       part_I                  2396 bp    DNA     circular UNK 29-OCT-2019
+DEFINITION  .
+ACCESSION   part_I
+VERSION     part_I
+KEYWORDS    .
+SOURCE
+  ORGANISM  .
+            .
+FEATURES             Location/Qualifiers
+     terminator      1991..2034
+                     /label="feature"
+                     /ApEinfo_fwdcolor="#c6c9d1"
+     terminator      10..67
+                     /label="another feature"
+                     /ApEinfo_fwdcolor="#c6c9d1"
+     rep_origin      complement(262..850)
+                     /label="yet another feature"
+                     /ApEinfo_fwdcolor="#ffef86"
+     misc_feature    2054..2388
+                     /label="feature"
+                     /ApEinfo_fwdcolor="#f8d3a9"
+     CDS             complement(1148..1807)
+                     /label="another feature"
+                     /ApEinfo_fwdcolor="#b7e6d7"
+     terminator      1033..1127
+                     /label="yet another feature"
+                     /ApEinfo_fwdcolor="#c6c9d1"
+ORIGIN
+        1 accctgcagt ccgcatccaa gcttgctggg gcctctatcc gggacctgct tccgtacccc
+       61 gtccgcctat caggctaacg actctgcctg ccattcaggc tcaccggcaa gttggagtga
+      121 cctcttcatc gatacaaata gcgcatacgc cagacatacc gcccacgcac tcgaccataa
+      181 aattccccgt cacggcgcgc acctccacac tccgtggcct aaggaacgtg gcagccggct
+      241 gggccacttt ttagactacc atcggctcat ttttagaagg ccaccggctg tccgtcaatc
+      301 gtacccgttt aggcctcctt aacacagttc cgaatagtta cctcaagatg cggatacagg
+      361 atggctcccc caggggtcta gttcagtctt ttgtcgcctg cgcttgaacc tttatgcagc
+      421 gatccacaaa cggaacaccg agatttgtat ttgggagggc aggctttgga ggaacggtgt
+      481 atgtactttt gcttggtacc ctaggtaccc cacgatctaa tcggtcttcc tgacaggtga
+      541 cagaggaggc cgtaactgcg accacaggct aactgcggcc ttaacttatg gtcgcgaact
+      601 gcataagggc gtcgccgccc gttgtcagtg cgaattctgt tagtcgtcgt gtacaccttc
+      661 cggtctaaca tctcgtagtt actagaagag cggatgggtc ctgtaaagag agcaggttcc
+      721 cgtcttctct cactttaccg gtactggtgt gaccgggtgt gagtgatact gtgattccgc
+      781 tactattgct atgcctgccg tcgtagctag atacgatccc agaacatttt gggctgattt
+      841 caagtctctc cgggattccg taacgacggt tctcgaactg aatagctttg agatatcgca
+      901 atattccttg gttgactctt gtccccggga cacaagtcgt gtgcaatatg tatacgtcag
+      961 tatgctcgag actcctaagg ccgcatatct atgctatcac tattgcctat gcagtaactg
+     1021 gctaagcttg tggggtactt gcacatgact catgtcaagg tcggaggatt cccagacagt
+     1081 tggcatcatc agtgcgttca aggcggggag cgaccagcca gatattgatc gacgaggtgc
+     1141 cacgaagtgt tccaaggtta tttttagtat gttacatcca tcagcgggtc taggccatac
+     1201 cggtctatat tatggtgagt cgtataggct gtaatgccgg ctgcacaatc tacggccgat
+     1261 tgcacataaa atggtcaact aacgacaagc tctgattctc aacttggata aaccttatca
+     1321 caaaaggtcc gacacggttc agccgaggta aatcaaagtg attatgactc caggagcgac
+     1381 acaaagttgc actgtctact gttggtcatc accgtactgc aaacgggtaa agatacttag
+     1441 ctttgttagc tattgcagaa cctaattgct ttcctgccct aaggcgatcc ggatcctcta
+     1501 tttatcaagt taattatcag agcttagctc aagtcaaagg tcttagtcag gtatggttta
+     1561 gtcggcttat ctcgctccga taaacccctc gcgcctcgga ttcattcacg cgtttatatg
+     1621 gtgaggggcg acccgtaggc tagtcgcact cctcggcaat taatcctaca gaaacctaga
+     1681 catgggagtt gcgatcctcg agatacggcc tgagagggtc ggcaaagtgg gtgcttcatt
+     1741 ctcttcggcg gagttcgcag gctctagaat gcctggtttt catctcgaca taaattacga
+     1801 tgttatctcg tgcattatta ccccttttct gcaggtttta agtcgagtct agtcttacta
+     1861 acgctgttct tcccgagaag gtgtccaggt tagatctcgg catattttca ctggcgcgct
+     1921 atccgacagg aagacagcac ccgttaagcg ccccagtcac atcaagatca gtcctatgtt
+     1981 gactcttgct ggaggtcttc tcgaatccag ctaatgttgg attacccgcc cctctggaat
+     2041 tcggtctctg cttttattat ccggcatgca tgcggcgttg catcgcttca tcgtcatcga
+     2101 catatcgtta gcgggactta tcagggtccc atcacggctg tgacagctgt tcataagtgt
+     2161 aatagcagtc accccaccaa atgcaagact gttcccaaac taagtgctag ggaggttggc
+     2221 tacctatcgg cgtggcagtt gaccgggttt ttcttagtac ctgccttcca atctccgata
+     2281 aaagcaagat gacttcctgc ttgcgctaaa gtctgaattc gctaaggggg cagattcatt
+     2341 accagagact gccaaagtca accgccgaac gatactggaa tatatggagg tatgag
+//
--- /dev/null	Thu Jan 01 00:00:00 1970 +0000
+++ b/test-data/init/2-step-golden_gate_plan_simulation/part_records/part_J.gb	Fri May 16 11:32:06 2025 +0000
@@ -0,0 +1,196 @@
+LOCUS       part_J                  4380 bp    DNA     circular UNK 31-OCT-2019
+DEFINITION  .
+ACCESSION   part_J
+VERSION     part_J
+KEYWORDS    "Source" "Sequence" "Freezer" "Shelf" "Box" "Concentration" "Use"
+            "creator:SynthSys Center" "marker:SmR".
+SOURCE
+  ORGANISM  .
+            .
+FEATURES             Location/Qualifiers
+     rep_origin      join(4298..4380,1..166)
+                     /label="feature"
+                     /ApEinfo_fwdcolor="#ffef86"
+     promoter        1442..1476
+                     /label="another feature"
+                     /ApEinfo_fwdcolor="#85dae9"
+     misc_feature    2345..2362
+                     /label="yet another feature"
+                     /ApEinfo_fwdcolor="#b4abac"
+     CDS             complement(2550..3341)
+                     /label="feature"
+                     /ApEinfo_fwdcolor="#b7e6d7"
+     misc_feature    1187..1210
+                     /label="another feature"
+                     /ApEinfo_fwdcolor="#b4abac"
+     misc_feature    1366..1396
+                     /label="yet another feature"
+                     /ApEinfo_fwdcolor="#b4abac"
+     CDS             complement(2550..3455)
+                     /label="feature"
+                     /ApEinfo_fwdcolor="#993366"
+     misc_feature    2421..2449
+                     /label="another feature"
+                     /ApEinfo_fwdcolor="#b4abac"
+     -35_signal      3766..3771
+                     /label="yet another feature"
+                     /ApEinfo_fwdcolor="#b4abac"
+     CDS             167..1186
+                     /label="feature"
+                     /ApEinfo_fwdcolor="#993366"
+     misc_feature    2526..2549
+                     /label="another feature"
+                     /ApEinfo_fwdcolor="#b4abac"
+     gene            167..1186
+                     /label="yet another feature"
+                     /ApEinfo_fwdcolor="#b4abac"
+     -10_signal      3744..3749
+                     /label="feature"
+                     /ApEinfo_fwdcolor="#b4abac"
+     CDS             1503..2222
+                     /label="another feature"
+                     /ApEinfo_fwdcolor="#ffef86"
+     misc_feature    1409..1426
+                     /label="yet another feature"
+                     /ApEinfo_fwdcolor="#b4abac"
+     -35_signal      3589..3594
+                     /label="feature"
+                     /ApEinfo_fwdcolor="#b4abac"
+     terminator      2227..2298
+                     /label="another feature"
+                     /ApEinfo_fwdcolor="#c6c9d1"
+     misc_feature    1319..1343
+                     /label="yet another feature"
+                     /ApEinfo_fwdcolor="#b4abac"
+     misc_feature    1370..1394
+                     /label="feature"
+                     /ApEinfo_fwdcolor="#f8d3a9"
+     misc_RNA        3625..4177
+                     /label="another feature"
+                     /ApEinfo_fwdcolor="#b4abac"
+     terminator      2314..2341
+                     /label="yet another feature"
+                     /ApEinfo_fwdcolor="#c6c9d1"
+     misc_feature    2364..2474
+                     /label="feature"
+                     /ApEinfo_fwdcolor="#b4abac"
+     misc_RNA        complement(3628..3735)
+                     /label="another feature"
+                     /ApEinfo_fwdcolor="#b4abac"
+     misc_feature    4264..4272
+                     /label="yet another feature"
+                     /ApEinfo_fwdcolor="#b4abac"
+     RBS             1485..1496
+                     /label="feature"
+                     /ApEinfo_fwdcolor="#ffef86"
+     misc_feature    2353..2356
+                     /label="another feature"
+                     /ApEinfo_fwdcolor="#ff0000"
+     misc_feature    complement(2476..2516)
+                     /label="yet another feature"
+                     /ApEinfo_fwdcolor="#c6c9d1"
+     misc_feature    3539..3562
+                     /label="feature"
+                     /ApEinfo_fwdcolor="#b4abac"
+     misc_feature    1427..1430
+                     /label="another feature"
+                     /ApEinfo_fwdcolor="#ff0000"
+     -10_signal      3610..3615
+                     /label="yet another feature"
+                     /ApEinfo_fwdcolor="#b4abac"
+     misc_feature    1211..1258
+                     /label="feature"
+                     /ApEinfo_fwdcolor="#c6c9d1"
+     gene            complement(2550..3455)
+                     /label="another feature"
+                     /ApEinfo_fwdcolor="#b4abac"
+     rep_origin      3589..4177
+                     /label="yet another feature"
+                     /ApEinfo_fwdcolor="#ffef86"
+     misc_feature    1414..1419
+                     /label="feature"
+                     /ApEinfo_fwdcolor="#84b0dc"
+     misc_feature    2388..2411
+                     /label="another feature"
+                     /ApEinfo_fwdcolor="#b4abac"
+     terminator      1409..1411
+                     /label="yet another feature"
+                     /ApEinfo_fwdcolor="#c6c9d1"
+     misc_feature    2357..2362
+                     /label="feature"
+                     /ApEinfo_fwdcolor="#84b0dc"
+ORIGIN
+        1 ctcatgggag tgtagcgcta gccatagttg acctgtcagc cggtcaaggt tggtccgaac
+       61 ctagccagtt agacgaccag ctcccccact attgcacagt gcctgtataa gcacgtcagt
+      121 gtctggcacc actgtgcgcg gtgtggtcct cgggacgatc ttcctacggc tacccatgcg
+      181 ctagtgatta cagacgatcg ttttttcttt ttctgtggtg caaatacaca agatacgtca
+      241 agagtcctag cagcctcatc ttgccaattg caggggtacc gattcaccca tggtatcagt
+      301 cacgcaaaaa aagacgacat cggagttgct ggcgactggc aaaagaaaac atctatctgc
+      361 cgtggcgttc gtctagcgca gcgagccgac tgactactcc gttatctcaa atttagtttc
+      421 gtaagatctt cacgggagcc ggccagctga agaatctata ggtctaccgc tagaggaagc
+      481 ccgtttacaa ccgacgtact agtccgacag caatcgtcag catgccaatt tattgtatca
+      541 ggttgagaat gcaccactac ggaatcgacg tgccactggc cgcacgatac tagtgcgctg
+      601 gtaaacaggc caggagctct aaatctggag tggtgtgaat ttaaccgcgg aacgattgtt
+      661 gcacgcggtc cctgtgactc tgttgggagc actgtccccg gctccggata agtgatgtga
+      721 acgaaaaggt gggctgacca gagatagggt taaggacggg cgatcgtagt ggacgattac
+      781 tgctgatctt ccgagcactc tgagtcgcgc ggcgtatcgg gagttacccc gctcgctaca
+      841 catctgaatt ccgccggata ctatgggtgc agagtggatc accttttcgt gacccgtata
+      901 ttcgtcgttc tcatcactgt cctccgcgat ttatttcaat cgtcggtttc gccagatgca
+      961 ttcctgggga agtcatcgcg acagtgcgct gcgcgcacag ctcttcttgg tttattcgag
+     1021 attgtggttt atcaacatgg tctatctacg gactgattag aatattccca cgttaagccg
+     1081 acgtgcattg gtactggctc cttaattaag cgcagagggt aggcgccttt tcttgtgcaa
+     1141 accattatat gaggaactag caaacactat ggcgcaatat gtccacgtga ctcgagcatt
+     1201 ctgtgttgcg gtagcgattt cactagtcac aaacggatag attctacggc gcacccggtg
+     1261 catcgttgta tgttcagcaa tttggtcata tcccgctcct ctattcaatc tcttttttcg
+     1321 tcaggggggg cacatacttg gagcagctgc gcctaacatt acaataagca gtcggagctc
+     1381 agtacaaaac ccttatctta gcggtccgtt ctggaattcg gtctcaggag atatgcaggt
+     1441 gtttacggct aggcacttac gcgaaatttc agctcgcggc aaactgtgct tatgcgactt
+     1501 cagctagtcg tcatcgagtg ctgacgcgct tgttctacct taaggtgccc gctatcgcat
+     1561 tgtccagggt tcggctatga gggtcggaac cagatcgcac ctacatgatg tcacgatact
+     1621 attattcacg tcgttagaga acggacggtc cttcgtcctc acaggaaaat tattagaaat
+     1681 ggtcaaccgg gtccacaaac gggcaattgc cactttggta gtacggttgc acataagatg
+     1741 atatttacgc cttctgcgtt caggttacga tagtcgttga tggggctcgc tccgggtgaa
+     1801 gttgatccag taaaatgggc gtcgatactt ctcctgtgag ctaagcgtct aaattcattc
+     1861 ctagtctcgt gacgagaaca gaaaagacta aaccacgcgt gatggacctt ggtaagcgct
+     1921 tgtcggtcta acttgtctca tctcacacgg tatgttcttg tgagcgctga ccagcccgtg
+     1981 tccctgacgg ggaattcatt ctaacttacg gcttgggcgt cgtgatgttt cggaatccag
+     2041 gatattacac agtagatgta gcttgtggcc gaacgagtgt atttcctgcg tcggattacc
+     2101 tcatttcttg ttaatctgcc tacaattaag ccctttcagc agccttccct ctcgtttata
+     2161 tttcgacagt caccgtgaca gtgtgatcga gctgtgggaa aatcacaata tagacgttag
+     2221 ttgcttcgac agaaacggcg aatgtacgcg gttgtgatgg atgagacagg ccattcaatt
+     2281 ctattcagcg aagttcagat tggttgctac tgctaaagga tgcgcatttg tcctttctgc
+     2341 gcacctgcat atacccctaa gatgccagcg caatacggca tcgcagggca agcaacaccg
+     2401 cacagcatgt ccctaaaggg aagatttaat acggactcag tcaagttgtg agaaacgaca
+     2461 atacattgag tggaatgccc tttggtacgt tggcgataga tctaacgaga aacttcaacg
+     2521 agatctagag tatcggactg agatgcatca tggctaggga ttgctgaatg gatatctttg
+     2581 ccaaaatgag ctcgactagg aatctcagac tgccagctac gaaaagctgg gggatattca
+     2641 tttccgctct tgtaaggcgc acgatgaccc tgtggagcaa aattcgacgc ggcaacgtag
+     2701 tcaaagtacg gcctatctgg gacggagatg ggattgtttc tgtattcatg ccggcctctt
+     2761 gagattgtaa ggatacccgg ccacagtctc gtaagaaacc cgatatcgct caaacgaatt
+     2821 gacatcagtt agggcttgcg ctctagcaac cacgcgtcgg gtgttcgact gaatttaaga
+     2881 tccagcgcaa accattcctt aaaggcggtc caggtgaaac cggctctgat aatgtacagt
+     2941 ggattgtcca gttcgcttca aagtgcaatc aggcaaggta ctggcaagtc accgcttggg
+     3001 gccggtttca gtggagcttt atcgacaaaa ggccgggccc tttggcctag agctcacttt
+     3061 tggtgtcgtt cacgagtgag aactttggct cgcagcttga atgcttgtca cgtttagggt
+     3121 tatacaacgt ttctataaac tacctatgac aaatcccgat cttctgaaac tccataagga
+     3181 ctaagagagt ccgcgacagt ttcacttggt cggtgctatt gactatgtca cgcatgcccg
+     3241 gtaaagcttt taagcaaagc ctgatatatc acgggaggtt actcaaagca ttttctaaag
+     3301 ggacagcgga ctcacattag cctaatataa acccgatcag gccatgcacc tcgattcacc
+     3361 ggaaggtagt accatgcacc ggatatttgg gacaacagtg aatagtacat cgtaaaatgt
+     3421 caaggcctag ctatttttca ctggtgtctt atctctatta caacacacac ggatgtcccg
+     3481 agcctacact ttcaaatata ctcaaggttc gctgttaagg gtaatacaag agtgctcggt
+     3541 ttagtatcca tatgttggta caagtgactg tgctagccgt aaattaattc ggcttccatt
+     3601 ccagcttggg tgtttagggt ctagacggtt gaaaccagaa agagtacaga caaaaccgta
+     3661 gctctcccaa ggttgatcct ccagacacct acccacacta gtagcgcagg cctagaggag
+     3721 acgttaggag cggaattgta cattcagtat cgcattaagc acaaagacag acaaacctag
+     3781 aagccactta tcccctcgta ggagtacaac ggcagcgctt tcgggaggag ttgcctaact
+     3841 acgctctgga cagcaagtcc cagaatgaag aaaatgactt ggcgagaacc caccactaca
+     3901 tgcagggtct tgggaccggt cagcacagct tatccatgcg gcaattccgg acgaccgcga
+     3961 atgaggatca cgacactgcc gatgttgcac cattgacctt ctcctatgca acaagggctt
+     4021 aagatggtag atggtaatag agtagcctgc gaccttatgc ggtaatacac aaaaaccggt
+     4081 aaacagtgcg ttgatgctgt gtgctggcgc atttgtgtac cttgctgggc tcgtataaaa
+     4141 ttctgtcagc aggacgttca cctcccttct gctagtcgct aggcacaaac ggaaaaggtc
+     4201 taatcgcgcg cgtgctcgtt agagtactgg ggcctcccac cacggatgat cacctcgccg
+     4261 atacatttgg ccttatgtct caataagacc tcatggtcta tcctacacca tagatttgga
+     4321 aagtctagtt gctgcctagc aggctgatag caagcgtcgt acgaggatcg aggaagggca
+//
--- /dev/null	Thu Jan 01 00:00:00 1970 +0000
+++ b/test-data/init/2-step-golden_gate_plan_simulation/part_records/part_K.gb	Fri May 16 11:32:06 2025 +0000
@@ -0,0 +1,108 @@
+LOCUS       part_K                  3634 bp    DNA     circular UNK 28-OCT-2019
+DEFINITION  .
+ACCESSION   part_K
+VERSION     part_K
+KEYWORDS    "creator:SynthSys Center" "marker:KanR, BlpR".
+SOURCE
+  ORGANISM  .
+            .
+FEATURES             Location/Qualifiers
+     misc_feature    1268..1284
+                     /label="feature"
+                     /ApEinfo_fwdcolor="#b4abac"
+     CDS             complement(join(3199..3634,1..380))
+                     /label="another feature"
+                     /ApEinfo_fwdcolor="#b7e6d7"
+     misc_feature    2374..2377
+                     /label="yet another feature"
+                     /ApEinfo_fwdcolor="#faac61"
+     misc_feature    2395..2419
+                     /label="feature"
+                     /ApEinfo_fwdcolor="#f8d3a9"
+     promoter        1382..1560
+                     /label="another feature"
+                     /ApEinfo_fwdcolor="#c6c9d1"
+     misc_feature    2370..2373
+                     /label="yet another feature"
+                     /ApEinfo_fwdcolor="#ff0000"
+     misc_feature    2389..2393
+                     /label="feature"
+                     /ApEinfo_fwdcolor="#84b0dc"
+     misc_feature    1239..1261
+                     /label="another feature"
+                     /ApEinfo_fwdcolor="#f8d3a9"
+     rep_origin      complement(2510..3098)
+                     /label="yet another feature"
+                     /ApEinfo_fwdcolor="#ffef86"
+     terminator      2117..2369
+                     /label="feature"
+                     /ApEinfo_fwdcolor="#c6c9d1"
+     CDS             1562..2112
+                     /label="another feature"
+                     /ApEinfo_fwdcolor="#b7e6d7"
+     rep_origin      671..1106
+                     /label="yet another feature"
+                     /ApEinfo_fwdcolor="#ffef86"
+ORIGIN
+        1 accagacagc ttccctgctg cttagagtgc catggggaat tgatctgtgt tcaatgactt
+       61 taccataagc gcgcatcgtc attgcatcac gtgctttatc tctcgtagct agtagggaac
+      121 aagagtttgc gaccactggt ggaatttcta gccgctatgt gaaaagtcac tagtagtatt
+      181 aatagtcggc acatcgcgta cgcagtgctg agattcccct cactgttact tgagctagtc
+      241 gcgccttgac agaccgcctt tcgaaggtgg cagagtgcct aatatattgc cacgttgagc
+      301 gtactccttc ccggagtttc atcttaccgc cgggcgcgcg aagctacgtt tttcgaattt
+      361 actaacgcac gctgacggtg gaagggcgat tggactggtt agattcaggt atgccttaag
+      421 cgtactttac aaccagaggc tttatttgat tgtctaatct tcgtcaaaga acgaatacca
+      481 gcgcttgagg ggtgactaga ctaataggag acaccgtctg tatcactcgt cggctatggc
+      541 cgtactgtga acgcgacggg ccctaccagg ccacagattc ctatgtacgt tgcaagggtg
+      601 ggctttgacc gttgcaacgg cgcactaggt ggcattcttc tctgctgcca atgatccgcc
+      661 tcgccgagct aggggcgaag caggttatga cgcagcggaa cggtagtact atctaatatc
+      721 aactaaaatt gtttctcaaa ggttcaaact agtattcttt attagaaacg atgatggcat
+      781 ccggaacagg gttatggccc aggtgctgga tgaagccttg cctcgaggga cttagtcgcg
+      841 tcgcccctct accaaggcgc taacggctag cgagatggtt gaggcgggag ccccgccact
+      901 ttctagttga attcagagct acgtatcctg atgctaatcc ctcgaagaac tttccgatgc
+      961 agctactatc tctttcgtaa agttagaata ggaacccggt aacggtggaa cgtcccgtca
+     1021 taggaggttg tctcctacac tatctaagta cgtcagaaga tcgatttcct cagccgctga
+     1081 ccccgtccgg catgaccagc gccgaacgta taggccgtat tgctgccgga acgactgctt
+     1141 caaaggtaac catagccgtg gtacagtgac aacccactta gctattaaat catgcgcact
+     1201 ctagacctct tgcacatacg gagcaactat gtatctaatt ggcacgagac atagaggagg
+     1261 gccaatcaca gtagtttact ggtcgaattc cacctgcata tggagagaca ctccttcatc
+     1321 aacagcagag gttacatacg tttaacctga ccgatggttg cccatcgaaa gcaaggaccc
+     1381 acgggtaggc agctgttgtt tgatatgctt ttgtccccgg aaggcgccga taaaattata
+     1441 cgccgtcccc cgcgtccgtt acgagcttcg tgatgttgcg ggctgaagtt ccctacgagt
+     1501 caataggcca actcgaatgg ctaaatggtt gcaacccaca ggctcaactt tgaaggtaat
+     1561 acgccaaaat ccaatatgct ctttcgggta gcgcataaaa ccttctgggg gccactgcag
+     1621 acagtcatgg aggactacgt gcaacactac gctctagagt gatgatgtgg cagtcaaccg
+     1681 agggctgtta agagaagtct gtgcacgaaa atcaatgagt cggtgtaatc ttcaccttcc
+     1741 tacaaaccaa ggcttgaggg cctcaatttc gagcaccact tcttgaccaa gccgttcgcc
+     1801 ggtataggag ttacgaattc gggtcgtctg ccgtctttga accatagata agtacctccc
+     1861 gagtcgggag aacacgaatc gcatcagaac tcatcgaagg gtgttacttt gcccatcggc
+     1921 atccccgaag attaattgca ttcgaaattt taacttcgag aatcatccgt gctaaccaac
+     1981 gtggacgagc tatgaacgtt tacgtgttca gtatctagga attgacacgt ctccgatagc
+     2041 gggagtcacg gcatgagtta cggcttttgt gaccagcgtc tgtgtaattt tattgacagt
+     2101 ttcatatata gtgtctcgtc ttgcctttga gattcacagg ctgtaagagg gatgccgtcg
+     2161 tgtatatgcc tgcagttaga gcttccttgt caggacgagc aactcactcc ttctggtgat
+     2221 gctttgctag catgtagctt cgggtacttg cggaaaagga cagcctacag tgtctgcggc
+     2281 ggtacgtcac taatatgaca tacgctgtgg acatcgtgaa gcggcgaatc gctccagatt
+     2341 gaggtttaca gagtactcca tagtcacaca actcagaata tgcaggtgct gcagtgaccg
+     2401 aatcctctca ggtcgcgctg gcggcccgtt tgagagtgct gaaagcgaag tttatccgca
+     2461 ccgtcatcca gtgcacctcc cccagagaat gattacttgt gaatgcggtt aacctgaggg
+     2521 ccgacgccgc gattaaattt ttaacgtgat gcacaagctg ggggcactct cccctggggt
+     2581 caggttataa ttttaaaccc actacggacc tggactgcaa gatgcttagt ccacgcgtct
+     2641 catagaccgt cggtctatag ccatgttcaa cgccgccagg ctgggcgcat aactgtatgt
+     2701 gactttgtcc acatccaagg cgacgatggc ggcagttggc cggagggctg gctgtcaagg
+     2761 ggccacgcgg atgaagggag ctcatacgca actatggagc gcggtatata gtataggatc
+     2821 cgccgggaca cgcgggaatc aagggacaaa ggagcagtca gcgtgaaatc tttacgggtg
+     2881 aagcgcgctc gtaccaccta gtcccgccta aggcccttgt gtcgtgcaac atcgctgggg
+     2941 cgacggatga caatatgatc aaggcccgag agctttgaat gtaagaggcg tattataaag
+     3001 cctaggtccg catgttgata cggggagcag cccatgcgca gtaggaaggt ccgaccaccc
+     3061 ttttctgagg tctactccaa cctccttgcc gagtgctctc cgctatctcc acgcatagca
+     3121 tactccgctt ctaacatctt cttcaaagca tacacgctac ttagcagagc aaatcgacac
+     3181 gcccatggag tggtccgctc aaaccgcgca attaagtata agctaatgtg acggaccgga
+     3241 cctacgattt cccccaactc gtggggatca gttgactcgt ctcagcttat gagacataat
+     3301 tacggtcata gggtacgcct atgcccctca gagatctcta ggtcatatgc cctatcgggt
+     3361 gctcggtgac cattgtctca tacaaagtca tatttggcag ggcttctatg gacgagtatt
+     3421 atgtgcccaa aagggaacgt ctgagttggg attcgcttct aaccaatact ctaatggtac
+     3481 ctaatttaat gtggtcgctg cgcaccccgc cgggtacaac tgctgagttc ctgagatcgg
+     3541 tacggcaaac atcttttatc cagacgaggg ttctggccag aattgatgtt cagatacgag
+     3601 aaggcatgtc atgtcacaag gattttggag aatt
+//
--- /dev/null	Thu Jan 01 00:00:00 1970 +0000
+++ b/test-data/init/2-step-golden_gate_plan_simulation/part_records/part_L.gb	Fri May 16 11:32:06 2025 +0000
@@ -0,0 +1,79 @@
+LOCUS       part_L                  2267 bp    DNA     circular UNK 28-OCT-2019
+DEFINITION  .
+ACCESSION   part_L
+VERSION     part_L
+KEYWORDS    "creator:SynthSys Center" "marker:KanR".
+SOURCE
+  ORGANISM  .
+            .
+FEATURES             Location/Qualifiers
+     misc_feature    join(2263..2267,1)
+                     /label="feature"
+                     /ApEinfo_fwdcolor="#84b0dc"
+     terminator      2..59
+                     /label="another feature"
+                     /ApEinfo_fwdcolor="#c6c9d1"
+     CDS             complement(1140..1955)
+                     /label="yet another feature"
+                     /ApEinfo_fwdcolor="#b7e6d7"
+     misc_feature    2206..2209
+                     /label="feature"
+                     /ApEinfo_fwdcolor="#ff0000"
+     misc_feature    2202..2205
+                     /label="another feature"
+                     /ApEinfo_fwdcolor="#faac61"
+     terminator      2139..2182
+                     /label="yet another feature"
+                     /ApEinfo_fwdcolor="#c6c9d1"
+     rep_origin      complement(254..842)
+                     /label="feature"
+                     /ApEinfo_fwdcolor="#ffef86"
+     misc_feature    2248..2251
+                     /label="another feature"
+                     /ApEinfo_fwdcolor="#ff0000"
+     misc_feature    2185..2190
+                     /label="yet another feature"
+                     /ApEinfo_fwdcolor="#84b0dc"
+     terminator      1025..1119
+                     /label="feature"
+                     /ApEinfo_fwdcolor="#c6c9d1"
+ORIGIN
+        1 gtccgatgcg agcaccacct atagataccc taatcagcat ggtcccggtg accattacca
+       61 ccgacggcct tgttttaaac gaaggcgctc actatacaag aaactaatgt ctcccacaag
+      121 gctcagaccc agccggtgct ttcagcgctc cccgttggcg ccccccgaag accatagaga
+      181 ggtgctctgt taacaactat aatgaaaggg attattgagg gagtcggagg tgaattctga
+      241 agccttaccc ctacggtcgt ggtcatcatc acggatcgcg ataagcggcc ggtctgttac
+      301 ggacgccact acgaggaggg tttcttggca atcaaggcta cgcattacaa ccatcggggt
+      361 cggtctggct gaacaatctt gatgttcaac ctttgttacc ggctccttgt gttattatcc
+      421 ggtttttttg atctatatgt ttataaggaa gcggtgcaga ccgtagagaa ataccggcta
+      481 aggcagtcgc tcaatgcaca ccagcatcgc cgagacatat aaagccataa acattaattg
+      541 gaatgctagt cacagcgtgt tgactggacg cttaaaagtt tctacaaaag gtatagtttt
+      601 aacatttctc tgagttagcg ctatcgggtc gactgacatc tagaattgac acgttactca
+      661 cctggatcct agtcacactc cgggaaccgc tcgcttagtg gcagtagcgg ggggcgtccc
+      721 taggatagct gcgcaaagcg tggtttatct aatcgtggct tgtgtggaca tgatgctgtt
+      781 caggcgcatc tgtggccgcc acagcattac caagctaatc agaaaccgcg gcatgtcccc
+      841 gcgatgcgag aggcatctgt tagagccaaa gagtggaggt ctgtaatatc gctagcggag
+      901 attttctaag gggcgtggga ctttatcccg atatggctga acgatccaac ggcaaatggt
+      961 tctgccattg aactttaacc atgaatagac tccaggcgag ggataatgga aataatagca
+     1021 ggaaatgaca atctactagg tgcgcactat caagattgta tgtttgcgta tcgtagttct
+     1081 aatggtcttg tgtcccgtat tgggtcggac ggtgctgttc ctgatcgtag caatgcccgg
+     1141 ttagaatcac gcatcggagc gatcatttcg ggcgatacgc gttcgttctg tccactcttg
+     1201 tgggagtccg acgtatgcct gctcggtatt gttttattca ggcgacagta cctcccattc
+     1261 aaatatacag ggttatacta cacaccacga gtaataaaga cttgtgttgt gccaattcct
+     1321 cgtgggactg ccacgctcgt gagcttcgcg gttacatacc cctatgtccc caactgttgg
+     1381 tggcaaatcc ctaatctaat ctattgtatc acagtcggtc aacgactgaa attggggcaa
+     1441 caccaacagt gctcttacga tattcgtctg tgtctaacaa tccaacaaaa agctgttatt
+     1501 atgatggagg atcttggatt gcgtcagtac tacggtgttg tacgagaatt gcatgatgat
+     1561 tcctcgatgt cgagtccttg caagatcgtg atctatagcc aagctgctgc tgtagatcaa
+     1621 cctcaccggg gcgggggtcc cattactatg ggcggcatta gagtaccata gatgaacgcg
+     1681 agcagagaca tgtcaatgta tcccagtcct gcagtactac gtcagtctct gctcctgggg
+     1741 ccaatgcacg cctgtagaat agggccgtgt tcccatgaga aatttgaggg acttacgatt
+     1801 agatggcctt ggcaggggac tccgcgtacg tgtggggatg aaccggcacc ggccttggcc
+     1861 ctgagtaaat gtaagcgata tcaacttcgc tattcatgat cagtggtatt cgtgtaggca
+     1921 ccgaaagtcc cttggcgaaa gtagagacat acgatacgga ccgcaagcga gcagaatttc
+     1981 agcacatgac agttattagc ttttttctaa tggtgctccc attatgattg tcaagtcccg
+     2041 actgctagct gtaggatgaa acacatccac acacgtgtta ccatactgat tttgacacta
+     2101 cttcctaacc gggccgaatg gtatctgctg cgatgcttag ttacgtaaca gccgaatgtc
+     2161 acgccactgc atattgtggt tctggaattc cacctgcata tgtcacgcta gagaccgtat
+     2221 gaggtgggcg gatagtggtg acttcaaacc catatgcagg tgctgca
+//
Binary file test-data/init/example_assembly_plan_simulation/Report.pdf has changed
Binary file test-data/init/example_assembly_plan_simulation/construct_1/construct_1_connections_graph.pdf has changed
--- /dev/null	Thu Jan 01 00:00:00 1970 +0000
+++ b/test-data/init/example_assembly_plan_simulation/construct_1/error.csv	Fri May 16 11:32:06 2025 +0000
@@ -0,0 +1,3 @@
+assembly_name;message;suggestion;data
+construct_1;Wrong number of constructs;expected_: 1,found: 0
+construct_1;Some parts are unused;unused_parts: partA & partB & partC & receptor
\ No newline at end of file
Binary file test-data/init/example_assembly_plan_simulation/construct_1/fragments_in_construct_1_homology_mix/partA_01.pdf has changed
Binary file test-data/init/example_assembly_plan_simulation/construct_1/fragments_in_construct_1_homology_mix/partB_01.pdf has changed
Binary file test-data/init/example_assembly_plan_simulation/construct_1/fragments_in_construct_1_homology_mix/partC_01.pdf has changed
Binary file test-data/init/example_assembly_plan_simulation/construct_1/fragments_in_construct_1_homology_mix/receptor_01.pdf has changed
Binary file test-data/init/example_assembly_plan_simulation/construct_1/provided_parts_plots/partA.pdf has changed
Binary file test-data/init/example_assembly_plan_simulation/construct_1/provided_parts_plots/partB.pdf has changed
Binary file test-data/init/example_assembly_plan_simulation/construct_1/provided_parts_plots/partC.pdf has changed
Binary file test-data/init/example_assembly_plan_simulation/construct_1/provided_parts_plots/receptor.pdf has changed
--- /dev/null	Thu Jan 01 00:00:00 1970 +0000
+++ b/test-data/init/example_assembly_plan_simulation/construct_1/provided_parts_records/partA.gb	Fri May 16 11:32:06 2025 +0000
@@ -0,0 +1,95 @@
+LOCUS       Exported                4022 bp    DNA     circular UNK 01-JAN-1980
+DEFINITION  natural circular DNA.
+ACCESSION   partA
+VERSION     partA
+KEYWORDS    .
+SOURCE      natural DNA sequence
+  ORGANISM  unspecified
+            .
+REFERENCE   1  (bases 1 to 4022)
+  AUTHORS   .
+  TITLE     Direct Submission
+  JOURNAL   Exported Thursday, Oct 17, 2019 from SnapGene Viewer 4.3.11
+            https://www.snapgene.com
+FEATURES             Location/Qualifiers
+     source          1..4022
+                     /organism="unspecified"
+                     /mol_type="genomic DNA"
+     misc_feature    22..1001
+                     /label="pA"
+                     /label="nonstandard type: annotation"
+     CDS             1123..2022
+                     /label="AmpR"
+     misc_feature    3023..3522
+                     /label="RepO_1"
+                     /label="nonstandard type: rep._origin"
+ORIGIN
+        1 cgtctcaatt gtaagataga acagggatat agctcgttgc atccataaat tgcccaccgt
+       61 agggagaacg ccgttggaaa atgagagtta ggcgatgagc ggttgtcgcc cgcacagaca
+      121 aaggatgcct ttataaatag tagcggcctt gtctgcacca gacgtttgtg ggtcgacgtg
+      181 ctattctagc caaaagcaaa atgtatcata ctacaggcaa taggccctat gctgaccaaa
+      241 cttggggacc cttgcgcctt ctctcttacg cataacatgc ataggtacct ctactcatca
+      301 ggcagggcgg cgtgaggtca ctatggctca agatgtgtac gactaaagaa aggtttatgc
+      361 tccttcccca aggacgcatt tgggactgct acttgcccct agcgaattca ctaggatttt
+      421 tgtagaacca tgagcgccct atccgatagc acagagacaa tgctacaagc aactgtgcat
+      481 gcgctcgatc gccgtgcatt aatacgtatt atagcgtatc gtgtacgcta atatcttagt
+      541 gcaccgcacg ctggttggat acaattccgt gaaataattc ctgcttacac aggggctttc
+      601 tggcgcatgg ctgtgtctgg atgtttgtga taagaggctc catgaacccg gcgggaaatg
+      661 aggggaaacc ccggggagca acgacactaa gcctggcagt tgttcagata ggacgctttt
+      721 gtcagtgggc ggttttgcat ccactaacta tcataaacga cacaacgtcg aatgatcatc
+      781 ggcggtttgc atgtagagac agctcctgca acaccatacc ggctcgtgga attacgctgt
+      841 gcgccggccc tcattcgatt gtgtccagcg tcggcgcgaa tgatgattga gatgtgcttc
+      901 ggctcagagc gtgcacaggt agttctcccc ccttacctag ctgatccagc aattccacgc
+      961 tggcccgcgc gtccttgggt aacactggat ctgtacccaa atacaccgtc gggctagaga
+     1021 cgctccacct gcgtctatcg tacagtgcta aaatggcagc agatagtgaa acttccgcta
+     1081 agctagcccc tcagggtaca ctgcaccgag gcgtgctgtc aatacttgat taagtcgggt
+     1141 tgtcggggac ctgccgtcac gcttccgagt gtatatccgg atttagttga cgtcatacag
+     1201 aggcactaag aagaataaac gcttacctcc agcaatcgtg tagtgtcagg tgtacgttct
+     1261 cccttgcgcc gttcggcaag cgtccggtgt cgggctgcaa ggaataaatc tttatggacc
+     1321 agaggggctt gtttcctcat atgggtgcgt gcacttatac gattcaaagg tggatatggc
+     1381 cgcataacac gtagccaggc tatagtcccg cggcctaatt ccttcgagtg cgggtgcctg
+     1441 tttttgtttt tcctttacga cacgaaccgc tctaacctgc tctatttcgc cacgttccag
+     1501 tgaacctctt agcctaccgc ccacgtacgg tgggacgcgt cgagcagtta aggtactgtg
+     1561 gagaaatcgt tcaatattag aaaacaggcg gtgtacgaat tactgtgtcc cggtgttgcc
+     1621 cgtttaacgg ctgccgtggt cataccgtga ggcaccacga ggggatgcta cgcaacatgc
+     1681 gaggtgtaat cagcagggaa gatcccgggg atcgaaagcg gtccgcgatt tgcgaccgat
+     1741 atgcataagg tgtcatttat attacaccta cgacactggt accggctcac agccaaatgc
+     1801 acagtctcaa gatagaattc gcaaaaatta ggcttatcgg gcgcttactc tttgttacac
+     1861 ttctggtctg tgagtgacgc cctgtgtccc atcactgcat gtgaggatgc gtgtactgca
+     1921 cctgtgaatt acagacgttt ccctaccagg gcgctacgtt ataatgttcg gttgcaaccc
+     1981 tctatagggt gatctcgaca taccactatg gtttgcgcgt ttcgggtgct tttggcgagg
+     2041 gccaggtacg gcggtgagac agcgtatttt gcgaataggg tattcggacg cacggtgtat
+     2101 agctcttgga aaacgactct tcgacgggcg tgtagaagta gccaagcagt tcggttgtta
+     2161 tcactaaatg cggaccatgt gcagccgttt aggagaggag tctgcaatgg atcagctggt
+     2221 cagattgtac cactcggttg agcctaaggc acttcaggtg ctcggattgt aatgaaccct
+     2281 caggttacgc cgttgcgctg agatcccaca agccataagc aatgagaatc gagcagctat
+     2341 cgaattacgc agcacttgct gatgaactgg gtgcacctaa agcgcccgat aaaacggagg
+     2401 gagtgaggta actactacat tgcgagtagt gcgaggggcc tccgagacta cattagagca
+     2461 gccatgccga atacgacaaa atctatagcc ttgcgaacgt aggggactga tttatggaca
+     2521 acaggaccga aacaagttgg agccacaacg gagctatgga cgttttcact attgatgggt
+     2581 ggcttgcgtc cgcatcccag gtttctctgg ttaattttca tgacgattct ttgtggtacg
+     2641 atccaggcat aagatagggc acctaacccg atactgtgaa cttatatgac ggctgaacat
+     2701 gccctaatag tctgccaaaa gggaaaccta taacggctct aaacgggccc cgggtacgta
+     2761 acagcaatgt tcctgtccac caaggcgttt ttagtaaccg ccgatcgatc tcgatcgaat
+     2821 tccgttttac gccccagatc gcagctccct tgacagtgtc agttgaatcc ccattctagg
+     2881 tttcctgata aaactaagta cggggacgca tcagtcgaaa gcaatcacag ataatagata
+     2941 tcttgagcag aaagacgtct tcacgaatca ggagcgagtg tcccctttga aagtgcgggc
+     3001 aacaataggt gtgaggtttc acggttgctt gatcagtagc tgttcactct ctcgcaggcc
+     3061 tacatagtga ggtggtgaga ttgttcaggt ctgtctcctg cgcggttgtc gagccccgtc
+     3121 gggcacgcta acaaggacag gaattcgggt cgtcaaataa caatttacgt catcgcatcc
+     3181 ctcaagggta aggcgtgatc tccatctcgg ttcccaattg gtcattgtga tagccacact
+     3241 gcagttaccg aaggcgattt tatactaccc tgataagtgc tcgcagcccc tcctccctaa
+     3301 taatgtaacg acgagcatta acccaggagt atttctcacg ttgctcgtgc ccagccaagg
+     3361 cgatcaacgc agaccggata gcgttagcta gcccacgggt aaaagcgatt gttgtactct
+     3421 ttcatatgaa tacagcactc gcgaatgcaa gcctacgtcg gctcgattct cttcctcacc
+     3481 acactggagg cgatgatcta gcccgtcttt caccccgtac ctttatactc ggccgcgtat
+     3541 ttctccaccg ggagctctgc ctaccaaagc gtcgtacgcc caggaagccg tttcctttat
+     3601 cctccctcat gtctcaacgc gcgagcatcg gagagtacgc gaaatcgact gtctggccaa
+     3661 cactggacag acgcgcgaga cactgataaa cccccatttt cgtggggtta gtaaatcggt
+     3721 ggcttcaaac ggttcgatcg ctcgcacgag cattagtcag gagtatgatt gcgcatcatc
+     3781 tctactccgt actaggttct gtagctcagg atctccgggg ggatcaagct tttatgtccc
+     3841 gcgggattag aagatatcca tccatatgtt tactttgatg cgggtccgag ctctctatga
+     3901 tgctgctttg acaaaatgtg gaaagcctca gcgaccgctc tggggtcaaa gctctacgac
+     3961 acgttgatgc taaacaagtt ggactactaa gcaaatgaag cggaagagat actgagcgct
+     4021 ct
+//
--- /dev/null	Thu Jan 01 00:00:00 1970 +0000
+++ b/test-data/init/example_assembly_plan_simulation/construct_1/provided_parts_records/partB.gb	Fri May 16 11:32:06 2025 +0000
@@ -0,0 +1,111 @@
+LOCUS       Exported                5022 bp    DNA     circular UNK 01-JAN-1980
+DEFINITION  natural circular DNA.
+ACCESSION   partB
+VERSION     partB
+KEYWORDS    .
+SOURCE      natural DNA sequence
+  ORGANISM  unspecified
+            .
+REFERENCE   1  (bases 1 to 5022)
+  AUTHORS   .
+  TITLE     Direct Submission
+  JOURNAL   Exported Thursday, Oct 17, 2019 from SnapGene Viewer 4.3.11
+            https://www.snapgene.com
+FEATURES             Location/Qualifiers
+     source          1..5022
+                     /organism="unspecified"
+                     /mol_type="genomic DNA"
+     misc_feature    22..2001
+                     /label="pB"
+                     /label="nonstandard type: annotation"
+     CDS             2123..3022
+                     /label="AmpR"
+     misc_feature    4023..4522
+                     /label="RepO_1"
+                     /label="nonstandard type: rep._origin"
+ORIGIN
+        1 cgtctcaggc ttgattgtta actaccgtat ggcggttacg atcgagtgac actattatta
+       61 gaccgctact ccaagtccca acttttcatc gccatacaga agagaacgag aaagtcgaag
+      121 agttatagcg tgtacacttc tgattagcta acgaatcgat gcgtacagca tactcgagca
+      181 actttatggg tcgtctgtct ccttgtaccc cgcttgacga ggatgtgttt gtaggcggct
+      241 tggatatcgg cagtgtatcc gcatggtcaa acactttagc ccgaccggtg ctcaaggtcg
+      301 aaatcctaat atagattggg ataggacccg tccattacta ggcgacattc gcagtcacga
+      361 gcccgcacgg ggtgcctcaa cacggtgaca ctcaattcgc cggcactgag tacgacgatc
+      421 gtgattgcca taccgtcatg ttttgtgtta cccctgataa gaagcgcaga tatggcacgg
+      481 gggcagaggg cggagtagac ccatgcaaaa ctctagcctc tgggcagcat gatcgacgta
+      541 gaacgccgtt gtgactcact agtttcagtt atgatgttca gccaagaatc ctccattttg
+      601 acgtgaacct tctcccttta caccttgaag ctgcaatatt aagtcgaccc tttaagttgc
+      661 cttgtcttgg tctagagccc gcagctcacc gataaaatga gcagtcaatt ttagcggcgg
+      721 ttgtccaggt tacatgcact ttgggctgga accgcgttac gtttggagta cttagaagtg
+      781 tcgtaggcat aggagagccg aaacttgata ttgggtctag ttagtgctct accccgcttc
+      841 ggatccgtaa tagtgatgtt gcataagacg cttgcctcaa ggcgacatac ggtggcggtt
+      901 gctggaaatg acgccccacc ccgtgataat ttggggacga gccgcacgat aacttctgcc
+      961 agcgaccgcc cctcccacgt ccgatggtga ttccgaattt tgattacatg ccagacacgc
+     1021 tttaatctcg ccaccacatt ggcaccccca ccaagtaatg tatgtaagaa gcagctgcgc
+     1081 cccaagttac gtgccgtttc cgatgggagc agcaataatg tcgatagcaa ccacccccct
+     1141 ctctactgac gaagcaacac cggggacacc gtcaccttgg cttcatttcg tattcattca
+     1201 cctacgcaca accgcctgac cgttcgttat cacgagccta tccccttcaa gcaatttccc
+     1261 ccccttgttc agcagcctac actatacgtt ggtacactgt gtgcgacaga tatttggtgc
+     1321 ccgtcttatt ctattctgag agagtttaat agccaaaaga tatgagtagg aacgggaggt
+     1381 acccgactcg cgttgaagca ctcttaagac ctctcttagc acttcgaagg gtaggtgcgt
+     1441 tcaaagaacc tctgctttta actaagatca aaaggattgc gtacaacttc cccgttaact
+     1501 ctccagagga tccgtagaag tctacaccaa aatacgtttg gtttcgccaa ggtgactatc
+     1561 ggtacttgtg cacgtaacag ggtaaagaat tgaaagcctc aaattgtacg acgttacgcc
+     1621 cggacggtcg ccggtgatag ggtgacgcat ttgcgtttgt catatcattt gggattagac
+     1681 ggagctggtg tacctctatg gacgttacaa aaccttgtgg taacagcctg ggtgccatcc
+     1741 acctagtccg aagtttcctt ctaaccgcgg catcagatgg atatgtacct tatggcgctt
+     1801 cccgggaagt ccaattcttc gtgttgaagg gacagctcta caggcctggc cacttgtggc
+     1861 gcatctaagt agtctaggtg catgattctc tcccttgggg gcgctgtcgt gggtcctgcc
+     1921 gagccacacc ctaacctcac gtcgcaagac ttggtaaata gctttttttt ttatgcccaa
+     1981 tctatttacg taacaatcga catcagagga ggggcagaga cgctccacct gcgtctatcg
+     2041 tacagtgcta aaatggcagc agatagtgaa acttccgcta agctagcccc tcagggtaca
+     2101 ctgcaccgag gcgtgctgtc aatacttgat taagtcgggt tgtcggggac ctgccgtcac
+     2161 gcttccgagt gtatatccgg atttagttga cgtcatacag aggcactaag aagaataaac
+     2221 gcttacctcc agcaatcgtg tagtgtcagg tgtacgttct cccttgcgcc gttcggcaag
+     2281 cgtccggtgt cgggctgcaa ggaataaatc tttatggacc agaggggctt gtttcctcat
+     2341 atgggtgcgt gcacttatac gattcaaagg tggatatggc cgcataacac gtagccaggc
+     2401 tatagtcccg cggcctaatt ccttcgagtg cgggtgcctg tttttgtttt tcctttacga
+     2461 cacgaaccgc tctaacctgc tctatttcgc cacgttccag tgaacctctt agcctaccgc
+     2521 ccacgtacgg tgggacgcgt cgagcagtta aggtactgtg gagaaatcgt tcaatattag
+     2581 aaaacaggcg gtgtacgaat tactgtgtcc cggtgttgcc cgtttaacgg ctgccgtggt
+     2641 cataccgtga ggcaccacga ggggatgcta cgcaacatgc gaggtgtaat cagcagggaa
+     2701 gatcccgggg atcgaaagcg gtccgcgatt tgcgaccgat atgcataagg tgtcatttat
+     2761 attacaccta cgacactggt accggctcac agccaaatgc acagtctcaa gatagaattc
+     2821 gcaaaaatta ggcttatcgg gcgcttactc tttgttacac ttctggtctg tgagtgacgc
+     2881 cctgtgtccc atcactgcat gtgaggatgc gtgtactgca cctgtgaatt acagacgttt
+     2941 ccctaccagg gcgctacgtt ataatgttcg gttgcaaccc tctatagggt gatctcgaca
+     3001 taccactatg gtttgcgcgt ttcgggtgct tttggcgagg gccaggtacg gcggtgagac
+     3061 agcgtatttt gcgaataggg tattcggacg cacggtgtat agctcttgga aaacgactct
+     3121 tcgacgggcg tgtagaagta gccaagcagt tcggttgtta tcactaaatg cggaccatgt
+     3181 gcagccgttt aggagaggag tctgcaatgg atcagctggt cagattgtac cactcggttg
+     3241 agcctaaggc acttcaggtg ctcggattgt aatgaaccct caggttacgc cgttgcgctg
+     3301 agatcccaca agccataagc aatgagaatc gagcagctat cgaattacgc agcacttgct
+     3361 gatgaactgg gtgcacctaa agcgcccgat aaaacggagg gagtgaggta actactacat
+     3421 tgcgagtagt gcgaggggcc tccgagacta cattagagca gccatgccga atacgacaaa
+     3481 atctatagcc ttgcgaacgt aggggactga tttatggaca acaggaccga aacaagttgg
+     3541 agccacaacg gagctatgga cgttttcact attgatgggt ggcttgcgtc cgcatcccag
+     3601 gtttctctgg ttaattttca tgacgattct ttgtggtacg atccaggcat aagatagggc
+     3661 acctaacccg atactgtgaa cttatatgac ggctgaacat gccctaatag tctgccaaaa
+     3721 gggaaaccta taacggctct aaacgggccc cgggtacgta acagcaatgt tcctgtccac
+     3781 caaggcgttt ttagtaaccg ccgatcgatc tcgatcgaat tccgttttac gccccagatc
+     3841 gcagctccct tgacagtgtc agttgaatcc ccattctagg tttcctgata aaactaagta
+     3901 cggggacgca tcagtcgaaa gcaatcacag ataatagata tcttgagcag aaagacgtct
+     3961 tcacgaatca ggagcgagtg tcccctttga aagtgcgggc aacaataggt gtgaggtttc
+     4021 acggttgctt gatcagtagc tgttcactct ctcgcaggcc tacatagtga ggtggtgaga
+     4081 ttgttcaggt ctgtctcctg cgcggttgtc gagccccgtc gggcacgcta acaaggacag
+     4141 gaattcgggt cgtcaaataa caatttacgt catcgcatcc ctcaagggta aggcgtgatc
+     4201 tccatctcgg ttcccaattg gtcattgtga tagccacact gcagttaccg aaggcgattt
+     4261 tatactaccc tgataagtgc tcgcagcccc tcctccctaa taatgtaacg acgagcatta
+     4321 acccaggagt atttctcacg ttgctcgtgc ccagccaagg cgatcaacgc agaccggata
+     4381 gcgttagcta gcccacgggt aaaagcgatt gttgtactct ttcatatgaa tacagcactc
+     4441 gcgaatgcaa gcctacgtcg gctcgattct cttcctcacc acactggagg cgatgatcta
+     4501 gcccgtcttt caccccgtac ctttatactc ggccgcgtat ttctccaccg ggagctctgc
+     4561 ctaccaaagc gtcgtacgcc caggaagccg tttcctttat cctccctcat gtctcaacgc
+     4621 gcgagcatcg gagagtacgc gaaatcgact gtctggccaa cactggacag acgcgcgaga
+     4681 cactgataaa cccccatttt cgtggggtta gtaaatcggt ggcttcaaac ggttcgatcg
+     4741 ctcgcacgag cattagtcag gagtatgatt gcgcatcatc tctactccgt actaggttct
+     4801 gtagctcagg atctccgggg ggatcaagct tttatgtccc gcgggattag aagatatcca
+     4861 tccatatgtt tactttgatg cgggtccgag ctctctatga tgctgctttg acaaaatgtg
+     4921 gaaagcctca gcgaccgctc tggggtcaaa gctctacgac acgttgatgc taaacaagtt
+     4981 ggactactaa gcaaatgaag cggaagagat actgagcgct ct
+//
--- /dev/null	Thu Jan 01 00:00:00 1970 +0000
+++ b/test-data/init/example_assembly_plan_simulation/construct_1/provided_parts_records/partC.gb	Fri May 16 11:32:06 2025 +0000
@@ -0,0 +1,111 @@
+LOCUS       Exported                5022 bp    DNA     circular UNK 01-JAN-1980
+DEFINITION  natural circular DNA.
+ACCESSION   partC
+VERSION     partC
+KEYWORDS    .
+SOURCE      natural DNA sequence
+  ORGANISM  unspecified
+            .
+REFERENCE   1  (bases 1 to 5022)
+  AUTHORS   .
+  TITLE     Direct Submission
+  JOURNAL   Exported Thursday, Oct 17, 2019 from SnapGene Viewer 4.3.11
+            https://www.snapgene.com
+FEATURES             Location/Qualifiers
+     source          1..5022
+                     /organism="unspecified"
+                     /mol_type="genomic DNA"
+     misc_feature    22..2001
+                     /label="pC"
+                     /label="nonstandard type: annotation"
+     CDS             2123..3022
+                     /label="AmpR"
+     misc_feature    4023..4522
+                     /label="RepO_1"
+                     /label="nonstandard type: rep._origin"
+ORIGIN
+        1 cgtctcaggg caaagattac gatagaaaaa cactcgacac agagtagtat gataaaagtt
+       61 gggacggcat gctggactcg agaagtgtcg atccggcaat ccagatacgg caatggtacc
+      121 ggtcacacct cattctaaga gcagtcaggg gctgtcaggt ctacagggca ccggccctga
+      181 ggcccttggg ctagggtctg tcacccctat ctgcactgac tttaaagtaa ccgagcaata
+      241 agacaatcaa tcgcagggct ctggatcggg gtccgaaggc ggggtgcagt gtctccctaa
+      301 ttgttaagct caaaagagca gccactcgtt ctcgatcctt agtccatcgc cgtgaggtac
+      361 aagcagtaca cccacggaag gcccggcatt gaagatgcaa gaaatagagc actggggtga
+      421 cgacggcatg ctaaggtaag aaggcaaatt ctggaggact gacttcccca caagcggcgt
+      481 aagctcggat aagattggga taaacggacc acggcggctg gatcttcacc cctttgcacg
+      541 gtatgaaaac ggatcaggat tctcttccac ctattgcacc tgctgagaag agagcgctgg
+      601 ggggacgtta cttatcccaa tcgcgacgtc acggacaaca tcgtgttaca ggtcaggctc
+      661 gaaatcctag gcagctggta tccgacgcgc aagttatcta ccaaataagt taggcgatcg
+      721 aaatcatagg ctgtttagtg cttttcttgg tatcatcctg aacttctgtc acctccgagg
+      781 ccgaagcaac tattatgagg acgactcgat gattgtccgg agatgttgca ccccggcaag
+      841 cctagaaaac cccggtcctt tgagttttaa tctaatagta gaagttctcg gaaatcagag
+      901 ctggagactc ggtgacgtta tagaaatgtt cgcacgaaga gcgcgacatg tcctacttca
+      961 caagatgctt tctaggaggg gatctggatt ctcaagccct acacatggtc cgtggtgtat
+     1021 gttggatcgt agtgctttta ccgactatgt cgcgttaaat tgtctttcat ttctacaatt
+     1081 cggggagcat ggggccatgt gacttaggtt cagaaggtgc gagcgggcgt actacgtttg
+     1141 gtggtcgtgt ataatcagaa gaatcggcga tatccgctag caagcaaagt gtccttgacg
+     1201 cttgtggaaa tccaactatt tcctgcctct caagtgttta gaaaaatatc ccctggagga
+     1261 gatatcgctc ctctcttctg cgaccaacac cagttcaatt ccgcagtgca gcagtcctat
+     1321 tccgcatgga tcacgctgac gagatgcggg gttgagacta ccccaaaaga tatgttgaga
+     1381 taaattacca ggatggataa tctggtaccg gtgcgaaagg gtggttacac cagagtcgcc
+     1441 tgatgagctt atgcgcaatt tcaagtccct atgttttact atgaaagtac gaccgagccg
+     1501 ctagcctgag tcaaatagcg cagaatttgg gtcgtggaga tcgcgcttgt taacctggtc
+     1561 taggcgcatc tgagtcataa cggggttata acgactgtca acgtgtgacc gcatatcctg
+     1621 caaggcgaac aaataacgcc ccgcccaaaa tattacattt aagtagttat ctaactcccg
+     1681 gcatgcgggg catttggggg cagcgtgccc attccgcccc tatgcctgtt tcaacacgca
+     1741 accgtagaga ttggctagga tgggttttca cgagccaact gccacattag acatagaatt
+     1801 ccgataagta taagagatat cagcgaggtt cagggtagtt tggaacgaca gccggttcag
+     1861 aagttcagta tggtcattca tcatccgttg tgttgagtcc tttagatcgt ggctttatca
+     1921 tgcatgtctc ccgccagccc tcaaactatg tcgtcacgcg catgtttaca ttatatggaa
+     1981 caaaacgaga ggtagaagcc aatcactatc cggcaagaga cgctccacct gcgtctatcg
+     2041 tacagtgcta aaatggcagc agatagtgaa acttccgcta agctagcccc tcagggtaca
+     2101 ctgcaccgag gcgtgctgtc aatacttgat taagtcgggt tgtcggggac ctgccgtcac
+     2161 gcttccgagt gtatatccgg atttagttga cgtcatacag aggcactaag aagaataaac
+     2221 gcttacctcc agcaatcgtg tagtgtcagg tgtacgttct cccttgcgcc gttcggcaag
+     2281 cgtccggtgt cgggctgcaa ggaataaatc tttatggacc agaggggctt gtttcctcat
+     2341 atgggtgcgt gcacttatac gattcaaagg tggatatggc cgcataacac gtagccaggc
+     2401 tatagtcccg cggcctaatt ccttcgagtg cgggtgcctg tttttgtttt tcctttacga
+     2461 cacgaaccgc tctaacctgc tctatttcgc cacgttccag tgaacctctt agcctaccgc
+     2521 ccacgtacgg tgggacgcgt cgagcagtta aggtactgtg gagaaatcgt tcaatattag
+     2581 aaaacaggcg gtgtacgaat tactgtgtcc cggtgttgcc cgtttaacgg ctgccgtggt
+     2641 cataccgtga ggcaccacga ggggatgcta cgcaacatgc gaggtgtaat cagcagggaa
+     2701 gatcccgggg atcgaaagcg gtccgcgatt tgcgaccgat atgcataagg tgtcatttat
+     2761 attacaccta cgacactggt accggctcac agccaaatgc acagtctcaa gatagaattc
+     2821 gcaaaaatta ggcttatcgg gcgcttactc tttgttacac ttctggtctg tgagtgacgc
+     2881 cctgtgtccc atcactgcat gtgaggatgc gtgtactgca cctgtgaatt acagacgttt
+     2941 ccctaccagg gcgctacgtt ataatgttcg gttgcaaccc tctatagggt gatctcgaca
+     3001 taccactatg gtttgcgcgt ttcgggtgct tttggcgagg gccaggtacg gcggtgagac
+     3061 agcgtatttt gcgaataggg tattcggacg cacggtgtat agctcttgga aaacgactct
+     3121 tcgacgggcg tgtagaagta gccaagcagt tcggttgtta tcactaaatg cggaccatgt
+     3181 gcagccgttt aggagaggag tctgcaatgg atcagctggt cagattgtac cactcggttg
+     3241 agcctaaggc acttcaggtg ctcggattgt aatgaaccct caggttacgc cgttgcgctg
+     3301 agatcccaca agccataagc aatgagaatc gagcagctat cgaattacgc agcacttgct
+     3361 gatgaactgg gtgcacctaa agcgcccgat aaaacggagg gagtgaggta actactacat
+     3421 tgcgagtagt gcgaggggcc tccgagacta cattagagca gccatgccga atacgacaaa
+     3481 atctatagcc ttgcgaacgt aggggactga tttatggaca acaggaccga aacaagttgg
+     3541 agccacaacg gagctatgga cgttttcact attgatgggt ggcttgcgtc cgcatcccag
+     3601 gtttctctgg ttaattttca tgacgattct ttgtggtacg atccaggcat aagatagggc
+     3661 acctaacccg atactgtgaa cttatatgac ggctgaacat gccctaatag tctgccaaaa
+     3721 gggaaaccta taacggctct aaacgggccc cgggtacgta acagcaatgt tcctgtccac
+     3781 caaggcgttt ttagtaaccg ccgatcgatc tcgatcgaat tccgttttac gccccagatc
+     3841 gcagctccct tgacagtgtc agttgaatcc ccattctagg tttcctgata aaactaagta
+     3901 cggggacgca tcagtcgaaa gcaatcacag ataatagata tcttgagcag aaagacgtct
+     3961 tcacgaatca ggagcgagtg tcccctttga aagtgcgggc aacaataggt gtgaggtttc
+     4021 acggttgctt gatcagtagc tgttcactct ctcgcaggcc tacatagtga ggtggtgaga
+     4081 ttgttcaggt ctgtctcctg cgcggttgtc gagccccgtc gggcacgcta acaaggacag
+     4141 gaattcgggt cgtcaaataa caatttacgt catcgcatcc ctcaagggta aggcgtgatc
+     4201 tccatctcgg ttcccaattg gtcattgtga tagccacact gcagttaccg aaggcgattt
+     4261 tatactaccc tgataagtgc tcgcagcccc tcctccctaa taatgtaacg acgagcatta
+     4321 acccaggagt atttctcacg ttgctcgtgc ccagccaagg cgatcaacgc agaccggata
+     4381 gcgttagcta gcccacgggt aaaagcgatt gttgtactct ttcatatgaa tacagcactc
+     4441 gcgaatgcaa gcctacgtcg gctcgattct cttcctcacc acactggagg cgatgatcta
+     4501 gcccgtcttt caccccgtac ctttatactc ggccgcgtat ttctccaccg ggagctctgc
+     4561 ctaccaaagc gtcgtacgcc caggaagccg tttcctttat cctccctcat gtctcaacgc
+     4621 gcgagcatcg gagagtacgc gaaatcgact gtctggccaa cactggacag acgcgcgaga
+     4681 cactgataaa cccccatttt cgtggggtta gtaaatcggt ggcttcaaac ggttcgatcg
+     4741 ctcgcacgag cattagtcag gagtatgatt gcgcatcatc tctactccgt actaggttct
+     4801 gtagctcagg atctccgggg ggatcaagct tttatgtccc gcgggattag aagatatcca
+     4861 tccatatgtt tactttgatg cgggtccgag ctctctatga tgctgctttg acaaaatgtg
+     4921 gaaagcctca gcgaccgctc tggggtcaaa gctctacgac acgttgatgc taaacaagtt
+     4981 ggactactaa gcaaatgaag cggaagagat actgagcgct ct
+//
--- /dev/null	Thu Jan 01 00:00:00 1970 +0000
+++ b/test-data/init/example_assembly_plan_simulation/construct_1/provided_parts_records/receptor.gb	Fri May 16 11:32:06 2025 +0000
@@ -0,0 +1,75 @@
+LOCUS       Exported                3022 bp    DNA     circular UNK 01-JAN-1980
+DEFINITION  natural circular DNA.
+ACCESSION   receptor
+VERSION     receptor
+KEYWORDS    .
+SOURCE      natural DNA sequence
+  ORGANISM  unspecified
+            .
+REFERENCE   1  (bases 1 to 3022)
+  AUTHORS   .
+  TITLE     Direct Submission
+  JOURNAL   Exported Thursday, Oct 17, 2019 from SnapGene Viewer 4.3.11
+            https://www.snapgene.com
+FEATURES             Location/Qualifiers
+     source          1..3022
+                     /organism="unspecified"
+                     /mol_type="genomic DNA"
+     CDS             523..1222
+                     /label="KanR"
+     misc_feature    2023..2522
+                     /label="RepO_2"
+                     /label="nonstandard type: rep._origin"
+ORIGIN
+        1 attgagagac gcgtctcagg cactttcgct atatggcgac gtgcgaaaaa cgcgatttgg
+       61 ccgaaatctc aaataataat gcaatgtgtt ggctaagctc gggcaaactc aggatgtgac
+      121 ctagtaccct ctgccccgtg agtacccata cccaatcaag ccagcccaat tcgcgatagg
+      181 tacagataag ccttactcgt cccgatcctt gactaaaaca ctcatcctcg atagtacgtg
+      241 ccttgtagag tccgacggcc ataggtaaac gaccagttag tgtcgtaggg tcctccactt
+      301 tagctacgat tgcaactccc ttaccttcgt gccggcgcgc tcctcttgct accatcacgc
+      361 ttcaaatcgg gtggaagacc aactgatgaa tgagggtgca gaccccagtg gagcataata
+      421 cgatgcgccc acgatactct agagccacgc gtcgacgttc gtaagatgtc ccgggcccgt
+      481 gggtggccac atcggccgcc catccttgtg tcttccgata agtactccct ttcaaggact
+      541 ctccgatacc ggcttagaac acgaacggac aacgctttca gcgctgagaa atgacggctg
+      601 cttcaaccag aacgatacag ccttctttgc tagatagcct ctagtgtcag ccaccaagtc
+      661 cgccacctaa tccttcgccg agggtcaaag cttctgacca tccaattgtt aggcactctt
+      721 ggaaccttgc aagtacctga tcatgcagaa aatggacttg cccggagcat attcattata
+      781 agtaccattc acggcaggtt atagtatgcg ttgacgcggg gtgatacggt aatgcaagta
+      841 accatcgggc cgcggtatgc acatagaagg gtgtttgact tggtttctta cagtgcaact
+      901 gcatatgtgg accgccattc caagtgaaag gatacgaagg gaggtttcgg actgctatcc
+      961 agagcatgga aagccttcaa ggtggtgcgc actggaatag tgactcgggg attgtatgtc
+     1021 gagccgcgtc cagtctttcc tatacttatg cgagcaaata gaccgagtgg aacttgattg
+     1081 catcagccga atcacgatga aaactcagct tacaattcgt aagcacttca aatatatgcc
+     1141 cggaaaatcg ccgtccagtg acttgtaata gctccagggt cagtagcgct gccctggccg
+     1201 aaccaggtga cggttacgtg gacctcacag tatcaatgtt gcagtgcgcc accagattaa
+     1261 gctggccgtg tcatggtgaa caaccgtgat aaaagaacgg gagtatgaga gtgccaccca
+     1321 agagtggtac tccaggattc ggaaagggga gggggctttt cctgcttaac aaccttcctc
+     1381 ggcacggtct aagggtctca ctcgtcctaa actctaccat catgcagcta ggcgaaagta
+     1441 taactttagg gtctctcagg atgagctatc tgtaccacgg tgatgagata agtagggggt
+     1501 gcgctagggt cgttcgtgtt ttcatcgtct atagtaccta tttctcgtct tccattagcg
+     1561 catacggcca tctcgcggcg gctacgtcag ccagcgtcaa ccccaagtca ctaatttccg
+     1621 ttattatagg tgtagctcat aacttcttct gccgaccaag ccaaaagctt tgcggcagct
+     1681 gcaaggccac gttaggctct cggacggcag atatttatta ataacaccac tgggttccag
+     1741 ctcttaacgc acttcccttc actggatcac ctgtacgccc ataagctaag cctgaagcca
+     1801 cggcctcaat cgtggacatt actcttagca aatccacatt accatgtcac caatccccga
+     1861 accccgcgcc gacctaaggc ggggtacctc gtgcacggca gcatcgaggg aaatatatta
+     1921 caaaagacgc ggcgatccaa cggttgataa aaacagttcc gtggaaggcg gacgtgtgct
+     1981 tagcgcatgc ttctcaccga gtgacagcac cgattccatc tcgctagcac gccgatgagc
+     2041 ctcgctgtgg gactatggtc cagcctatgc ttaactaggc agaacagaga gtatggtggt
+     2101 cctcggtaag gtcgatttgg tggcactcgc aagatacgcg ggttattagt agagcgcagt
+     2161 cagggcccat cgccagcatt tgcatgctcg ccgtacgcta tccttgtact acggttcctc
+     2221 agtggctata aaggaatgtc acaactccat tagccccttt tgttcagcgc ttagtcatgg
+     2281 tgggactgac tcaccgagac tacatacgga ttgtgcccgc agagacctgc ctttcatgct
+     2341 ggggttttgt aagcagctcc acggggtagt gtcaccatgc cttcgaccta tgcttatgaa
+     2401 acccgaggta atgcggcagg atcccgtgga tcctacgctt agcctgttta agccatcgtt
+     2461 ctcctcggcc cccagccagc gcgtattccg cgcattcctc cgagtgcgta tcgcgcaaac
+     2521 cacaagatac ctctcaacga ctagcggtga accaccaagc ttgacatacg tgccccttcg
+     2581 gaaacgttat tagtggtcct gagtggtacg tcccgagtat acggggcagc gatagtaacg
+     2641 ctacaaatag ctaggcgagg ttgcgatacc tgaatgaata tccaacagtg gcaacgaggc
+     2701 gcttagaaag ggaaactaca taccagttca atccgggatg acttcaaaag ggtatgtttg
+     2761 ttttgaagcg aagctttggt tgtcattcag ttcctagagt ttacggcgct gatatggctc
+     2821 taggagtcca gtgaattcgt cagcataagc cccacatcgt aggaaattgc ccggtcgtcg
+     2881 gtctagcaaa tgctcggtaa actgggagtg tactaacacc atgtcgtggt aacccggtgg
+     2941 accggctact agagacatat ttattcatgc tcagttgaac ctgtttcgag ggggccgagt
+     3001 taacataaag tgattagtca ca
+//
Binary file test-data/init/example_assembly_plan_simulation/construct_2/construct_2_connections_graph.pdf has changed
--- /dev/null	Thu Jan 01 00:00:00 1970 +0000
+++ b/test-data/init/example_assembly_plan_simulation/construct_2/error.csv	Fri May 16 11:32:06 2025 +0000
@@ -0,0 +1,3 @@
+assembly_name;message;suggestion;data
+construct_2;Wrong number of constructs;expected_: 1,found: 0
+construct_2;Some parts are unused;unused_parts: partA2 & partB2 & partC & receptor
\ No newline at end of file
Binary file test-data/init/example_assembly_plan_simulation/construct_2/fragments_in_construct_2_homology_mix/partA2_01.pdf has changed
Binary file test-data/init/example_assembly_plan_simulation/construct_2/fragments_in_construct_2_homology_mix/partB2_01.pdf has changed
Binary file test-data/init/example_assembly_plan_simulation/construct_2/fragments_in_construct_2_homology_mix/partC_01.pdf has changed
Binary file test-data/init/example_assembly_plan_simulation/construct_2/fragments_in_construct_2_homology_mix/receptor_01.pdf has changed
Binary file test-data/init/example_assembly_plan_simulation/construct_2/provided_parts_plots/partA2.pdf has changed
Binary file test-data/init/example_assembly_plan_simulation/construct_2/provided_parts_plots/partB2.pdf has changed
Binary file test-data/init/example_assembly_plan_simulation/construct_2/provided_parts_plots/partC.pdf has changed
Binary file test-data/init/example_assembly_plan_simulation/construct_2/provided_parts_plots/receptor.pdf has changed
--- /dev/null	Thu Jan 01 00:00:00 1970 +0000
+++ b/test-data/init/example_assembly_plan_simulation/construct_2/provided_parts_records/partA2.gb	Fri May 16 11:32:06 2025 +0000
@@ -0,0 +1,95 @@
+LOCUS       Exported                4022 bp    DNA     circular UNK 01-JAN-1980
+DEFINITION  natural circular DNA.
+ACCESSION   partA2
+VERSION     partA2
+KEYWORDS    .
+SOURCE      natural DNA sequence
+  ORGANISM  unspecified
+            .
+REFERENCE   1  (bases 1 to 4022)
+  AUTHORS   .
+  TITLE     Direct Submission
+  JOURNAL   Exported Thursday, Oct 17, 2019 from SnapGene Viewer 4.3.11
+            https://www.snapgene.com
+FEATURES             Location/Qualifiers
+     source          1..4022
+                     /organism="unspecified"
+                     /mol_type="genomic DNA"
+     misc_feature    22..1001
+                     /label="pA2"
+                     /label="nonstandard type: annotation"
+     CDS             1123..2022
+                     /label="AmpR"
+     misc_feature    3023..3522
+                     /label="RepO_1"
+                     /label="nonstandard type: rep._origin"
+ORIGIN
+        1 cgtctcaatt gtaagataga acagggatat agctcgttgc atccataaat tgcccaccgt
+       61 agggagaacg ccgttggaaa atgagagtta ggcgatgagc ggttgtcgcc cgcacagaca
+      121 aaggatgcct ttataaatag tagcggcctt gtctgcacca gacgtttgtg ggtcgacgtg
+      181 ctattctagc caaaagcaaa atgtatcata ctacaggcaa taggccctat gctgaccaaa
+      241 cttggggacc cttgcgcctt ctctcttacg cataacatgc ataggtacct ctactcatca
+      301 ggcagggcgg cgtgaggtca ctatggctca agatgtgtac gactaaagaa aggtttatgc
+      361 tccttcccca aggacgcatt tgggactgct acttgcccct agcgaattca ctaggatttt
+      421 tgtagaacca tgagcgccct atccgatagc acagagacaa tgctacaagc aactgtgcat
+      481 gcgctcgatc gccgtgcatt aatacgtatt atagagtatc gtgtacgcta atatcttagt
+      541 gcaccgcacg ctggttggat acaattccgt gaaataattc ctgcttacac aggggctttc
+      601 tggcgcatgg ctgtgtctgg atgtttgtga taagaggctc caagaacccg gcgggaaatg
+      661 aggggaaacc ccggggagca acgacactaa gcctggcagt tgttcagata ggacgctttt
+      721 gtcagtgggc ggttttgcat ccactaacta tcataaacga cacaacgtcg aatgatcatc
+      781 ggcggtttgc atgtagagac agctcctgca acaccatacc ggctcgtgga attacgctgt
+      841 gcgccggccc tcattcgatt gtgtccagcg tcggcgcgaa tgatgattga gatgtgcttc
+      901 ggctcagagc gtgcacaggt agttctcccc ccttacctag ctaatccagc aattccacgc
+      961 tggcccgcgc gtccttgggt aacactggat ctgtacccaa atacaccgtc gggctagaga
+     1021 cgctccacct gcgtctatcg tacagtgcta aaatggcagc agatagtgaa acttccgcta
+     1081 agctagcccc tcagggtaca ctgcaccgag gcgtgctgtc aatacttgat taagtcgggt
+     1141 tgtcggggac ctgccgtcac gcttccgagt gtatatccgg atttagttga cgtcatacag
+     1201 aggcactaag aagaataaac gcttacctcc agcaatcgtg tagtgtcagg tgtacgttct
+     1261 cccttgcgcc gttcggcaag cgtccggtgt cgggctgcaa ggaataaatc tttatggacc
+     1321 agaggggctt gtttcctcat atgggtgcgt gcacttatac gattcaaagg tggatatggc
+     1381 cgcataacac gtagccaggc tatagtcccg cggcctaatt ccttcgagtg cgggtgcctg
+     1441 tttttgtttt tcctttacga cacgaaccgc tctaacctgc tctatttcgc cacgttccag
+     1501 tgaacctctt agcctaccgc ccacgtacgg tgggacgcgt cgagcagtta aggtactgtg
+     1561 gagaaatcgt tcaatattag aaaacaggcg gtgtacgaat tactgtgtcc cggtgttgcc
+     1621 cgtttaacgg ctgccgtggt cataccgtga ggcaccacga ggggatgcta cgcaacatgc
+     1681 gaggtgtaat cagcagggaa gatcccgggg atcgaaagcg gtccgcgatt tgcgaccgat
+     1741 atgcataagg tgtcatttat attacaccta cgacactggt accggctcac agccaaatgc
+     1801 acagtctcaa gatagaattc gcaaaaatta ggcttatcgg gcgcttactc tttgttacac
+     1861 ttctggtctg tgagtgacgc cctgtgtccc atcactgcat gtgaggatgc gtgtactgca
+     1921 cctgtgaatt acagacgttt ccctaccagg gcgctacgtt ataatgttcg gttgcaaccc
+     1981 tctatagggt gatctcgaca taccactatg gtttgcgcgt ttcgggtgct tttggcgagg
+     2041 gccaggtacg gcggtgagac agcgtatttt gcgaataggg tattcggacg cacggtgtat
+     2101 agctcttgga aaacgactct tcgacgggcg tgtagaagta gccaagcagt tcggttgtta
+     2161 tcactaaatg cggaccatgt gcagccgttt aggagaggag tctgcaatgg atcagctggt
+     2221 cagattgtac cactcggttg agcctaaggc acttcaggtg ctcggattgt aatgaaccct
+     2281 caggttacgc cgttgcgctg agatcccaca agccataagc aatgagaatc gagcagctat
+     2341 cgaattacgc agcacttgct gatgaactgg gtgcacctaa agcgcccgat aaaacggagg
+     2401 gagtgaggta actactacat tgcgagtagt gcgaggggcc tccgagacta cattagagca
+     2461 gccatgccga atacgacaaa atctatagcc ttgcgaacgt aggggactga tttatggaca
+     2521 acaggaccga aacaagttgg agccacaacg gagctatgga cgttttcact attgatgggt
+     2581 ggcttgcgtc cgcatcccag gtttctctgg ttaattttca tgacgattct ttgtggtacg
+     2641 atccaggcat aagatagggc acctaacccg atactgtgaa cttatatgac ggctgaacat
+     2701 gccctaatag tctgccaaaa gggaaaccta taacggctct aaacgggccc cgggtacgta
+     2761 acagcaatgt tcctgtccac caaggcgttt ttagtaaccg ccgatcgatc tcgatcgaat
+     2821 tccgttttac gccccagatc gcagctccct tgacagtgtc agttgaatcc ccattctagg
+     2881 tttcctgata aaactaagta cggggacgca tcagtcgaaa gcaatcacag ataatagata
+     2941 tcttgagcag aaagacgtct tcacgaatca ggagcgagtg tcccctttga aagtgcgggc
+     3001 aacaataggt gtgaggtttc acggttgctt gatcagtagc tgttcactct ctcgcaggcc
+     3061 tacatagtga ggtggtgaga ttgttcaggt ctgtctcctg cgcggttgtc gagccccgtc
+     3121 gggcacgcta acaaggacag gaattcgggt cgtcaaataa caatttacgt catcgcatcc
+     3181 ctcaagggta aggcgtgatc tccatctcgg ttcccaattg gtcattgtga tagccacact
+     3241 gcagttaccg aaggcgattt tatactaccc tgataagtgc tcgcagcccc tcctccctaa
+     3301 taatgtaacg acgagcatta acccaggagt atttctcacg ttgctcgtgc ccagccaagg
+     3361 cgatcaacgc agaccggata gcgttagcta gcccacgggt aaaagcgatt gttgtactct
+     3421 ttcatatgaa tacagcactc gcgaatgcaa gcctacgtcg gctcgattct cttcctcacc
+     3481 acactggagg cgatgatcta gcccgtcttt caccccgtac ctttatactc ggccgcgtat
+     3541 ttctccaccg ggagctctgc ctaccaaagc gtcgtacgcc caggaagccg tttcctttat
+     3601 cctccctcat gtctcaacgc gcgagcatcg gagagtacgc gaaatcgact gtctggccaa
+     3661 cactggacag acgcgcgaga cactgataaa cccccatttt cgtggggtta gtaaatcggt
+     3721 ggcttcaaac ggttcgatcg ctcgcacgag cattagtcag gagtatgatt gcgcatcatc
+     3781 tctactccgt actaggttct gtagctcagg atctccgggg ggatcaagct tttatgtccc
+     3841 gcgggattag aagatatcca tccatatgtt tactttgatg cgggtccgag ctctctatga
+     3901 tgctgctttg acaaaatgtg gaaagcctca gcgaccgctc tggggtcaaa gctctacgac
+     3961 acgttgatgc taaacaagtt ggactactaa gcaaatgaag cggaagagat actgagcgct
+     4021 ct
+//
--- /dev/null	Thu Jan 01 00:00:00 1970 +0000
+++ b/test-data/init/example_assembly_plan_simulation/construct_2/provided_parts_records/partB2.gb	Fri May 16 11:32:06 2025 +0000
@@ -0,0 +1,111 @@
+LOCUS       Exported                5022 bp    DNA     circular UNK 01-JAN-1980
+DEFINITION  natural circular DNA.
+ACCESSION   partB2
+VERSION     partB2
+KEYWORDS    .
+SOURCE      natural DNA sequence
+  ORGANISM  unspecified
+            .
+REFERENCE   1  (bases 1 to 5022)
+  AUTHORS   .
+  TITLE     Direct Submission
+  JOURNAL   Exported Thursday, Oct 17, 2019 from SnapGene Viewer 4.3.11
+            https://www.snapgene.com
+FEATURES             Location/Qualifiers
+     source          1..5022
+                     /organism="unspecified"
+                     /mol_type="genomic DNA"
+     misc_feature    22..2001
+                     /label="pB2"
+                     /label="nonstandard type: annotation"
+     CDS             2123..3022
+                     /label="AmpR"
+     misc_feature    4023..4522
+                     /label="RepO_1"
+                     /label="nonstandard type: rep._origin"
+ORIGIN
+        1 cgtctcaggc ttgattgtta actaccgtat ggcggttacg atcgagtgac actattatta
+       61 gaccgctact ccaagtccca acttttcatc gccatacaga agagaacgag aaagtcgaag
+      121 agttatagcg tgtacacttc tgattagcta acgaatcgat gcgtacagca tactcgagca
+      181 actttatggg tcgtctgtct ccttgtaccc cgcttgacga ggatgtgttt gtaggcggct
+      241 tggatatcgg cagtgtatcc gcatggtcaa acactttagc ccgaccggtg ctcaaggtcg
+      301 aaatcctaat atagattggg ataggacccg tccattacta ggcgacattc gcagtcacga
+      361 gcccgcacgg ggtgcctcaa cacggtgaca ctcaattcgc cgacactgag tacgacgatc
+      421 gtgattgcca taccgtcatg ttttgtgtta cccctgataa gaagcgcaga tatggcacgg
+      481 gggcagaggg cggagtagac ccaagcaaaa ctctagcctc tgggcagcat gatcgacgta
+      541 gaacgccgtt gtgactcact agtttcagtt atgatgttca gccaagaatc ctccattttg
+      601 acgtgaacct tctcccttta caccttgaag ctgcaatatt aagtcgaccc tttaagttgc
+      661 cttgtcttgg tctagagccc gcagctcacc gataaaatga gcagtcaatt ttagcggcgg
+      721 ttgtccaggt tacatgcact ttgggctgga accgcgttac gtttggagta cttagaagtg
+      781 tcgtaggcat aggagagccg aaacttgata ttgggtctag ttagtgctct accccgcttc
+      841 ggatccgtaa tagtgatgtt gcataagacg cttgcctcaa ggcgacatac ggtggcggtt
+      901 gctggaaatg acgccccacc ccgtgataat ttggggacga gccacacgat aacttctgcc
+      961 agcgaccgcc cctcccacgt ccgatggtga ttccgaattt tgattacatg ccagacacgc
+     1021 tttaatctcg ccaccacatt ggcaccccca ccaagtaatg tatgtaagaa gcagctgcgc
+     1081 cccaagttac gtgccgtttc cgatgggagc agcaataatg tcgatagcaa ccacccccct
+     1141 ctctactgac gaagcaacac cggggacacc gtcaccttgg cttcatttcg tattcattca
+     1201 cctacgcaca accgcctgac cgttcgttat cacgagccta tccccttcaa gcaatttccc
+     1261 ccccttgttc agcagcctac actatacgtt ggtacactgt gtgcgacaga tatttggtgc
+     1321 ccgtcttatt ctattctgag agagtttaat agccaaaaga tatgagtagg aacgggaggt
+     1381 acccgactcg cgttgaagca ctcttaagac ctctcttagc acttcgaagg gtaggtgcgt
+     1441 tcaaagaacc tctgctttta actaagatca aaaggattgc gtacaacttc cccgttaact
+     1501 ctccagagga tccgtagaag tctacaccaa aatacgtttg gtttcgccaa ggtgactatc
+     1561 ggtacttgtg cacgtaacag ggtaaagaat tgaaagcctc aaattgtacg acgttacgcc
+     1621 cggacggtcg ccggtgatag ggtgacgcat ttgcgtttgt catatcattt gggattagac
+     1681 ggagctggtg tacctctatg gacgttacaa aaccttgtgg taacagcctg ggtgccatcc
+     1741 acctagtccg aagtttcctt ctaaccgcgg catcagatgg atatgtacct tatggcgctt
+     1801 cccgggaagt ccaattcttc gtgttgaagg gacagctcta caggcctggc cacttgtggc
+     1861 gcatctaagt agtctaggtg catgattctc tcccttgggg gcgctgtcgt gggtcctgcc
+     1921 gagccacacc ctaacctcac gtcgcaagac ttggtaaata gctttttttt ttatgcccaa
+     1981 tctatttacg taacaatcga catcagagga ggggcagaga cgctccacct gcgtctatcg
+     2041 tacagtgcta aaatggcagc agatagtgaa acttccgcta agctagcccc tcagggtaca
+     2101 ctgcaccgag gcgtgctgtc aatacttgat taagtcgggt tgtcggggac ctgccgtcac
+     2161 gcttccgagt gtatatccgg atttagttga cgtcatacag aggcactaag aagaataaac
+     2221 gcttacctcc agcaatcgtg tagtgtcagg tgtacgttct cccttgcgcc gttcggcaag
+     2281 cgtccggtgt cgggctgcaa ggaataaatc tttatggacc agaggggctt gtttcctcat
+     2341 atgggtgcgt gcacttatac gattcaaagg tggatatggc cgcataacac gtagccaggc
+     2401 tatagtcccg cggcctaatt ccttcgagtg cgggtgcctg tttttgtttt tcctttacga
+     2461 cacgaaccgc tctaacctgc tctatttcgc cacgttccag tgaacctctt agcctaccgc
+     2521 ccacgtacgg tgggacgcgt cgagcagtta aggtactgtg gagaaatcgt tcaatattag
+     2581 aaaacaggcg gtgtacgaat tactgtgtcc cggtgttgcc cgtttaacgg ctgccgtggt
+     2641 cataccgtga ggcaccacga ggggatgcta cgcaacatgc gaggtgtaat cagcagggaa
+     2701 gatcccgggg atcgaaagcg gtccgcgatt tgcgaccgat atgcataagg tgtcatttat
+     2761 attacaccta cgacactggt accggctcac agccaaatgc acagtctcaa gatagaattc
+     2821 gcaaaaatta ggcttatcgg gcgcttactc tttgttacac ttctggtctg tgagtgacgc
+     2881 cctgtgtccc atcactgcat gtgaggatgc gtgtactgca cctgtgaatt acagacgttt
+     2941 ccctaccagg gcgctacgtt ataatgttcg gttgcaaccc tctatagggt gatctcgaca
+     3001 taccactatg gtttgcgcgt ttcgggtgct tttggcgagg gccaggtacg gcggtgagac
+     3061 agcgtatttt gcgaataggg tattcggacg cacggtgtat agctcttgga aaacgactct
+     3121 tcgacgggcg tgtagaagta gccaagcagt tcggttgtta tcactaaatg cggaccatgt
+     3181 gcagccgttt aggagaggag tctgcaatgg atcagctggt cagattgtac cactcggttg
+     3241 agcctaaggc acttcaggtg ctcggattgt aatgaaccct caggttacgc cgttgcgctg
+     3301 agatcccaca agccataagc aatgagaatc gagcagctat cgaattacgc agcacttgct
+     3361 gatgaactgg gtgcacctaa agcgcccgat aaaacggagg gagtgaggta actactacat
+     3421 tgcgagtagt gcgaggggcc tccgagacta cattagagca gccatgccga atacgacaaa
+     3481 atctatagcc ttgcgaacgt aggggactga tttatggaca acaggaccga aacaagttgg
+     3541 agccacaacg gagctatgga cgttttcact attgatgggt ggcttgcgtc cgcatcccag
+     3601 gtttctctgg ttaattttca tgacgattct ttgtggtacg atccaggcat aagatagggc
+     3661 acctaacccg atactgtgaa cttatatgac ggctgaacat gccctaatag tctgccaaaa
+     3721 gggaaaccta taacggctct aaacgggccc cgggtacgta acagcaatgt tcctgtccac
+     3781 caaggcgttt ttagtaaccg ccgatcgatc tcgatcgaat tccgttttac gccccagatc
+     3841 gcagctccct tgacagtgtc agttgaatcc ccattctagg tttcctgata aaactaagta
+     3901 cggggacgca tcagtcgaaa gcaatcacag ataatagata tcttgagcag aaagacgtct
+     3961 tcacgaatca ggagcgagtg tcccctttga aagtgcgggc aacaataggt gtgaggtttc
+     4021 acggttgctt gatcagtagc tgttcactct ctcgcaggcc tacatagtga ggtggtgaga
+     4081 ttgttcaggt ctgtctcctg cgcggttgtc gagccccgtc gggcacgcta acaaggacag
+     4141 gaattcgggt cgtcaaataa caatttacgt catcgcatcc ctcaagggta aggcgtgatc
+     4201 tccatctcgg ttcccaattg gtcattgtga tagccacact gcagttaccg aaggcgattt
+     4261 tatactaccc tgataagtgc tcgcagcccc tcctccctaa taatgtaacg acgagcatta
+     4321 acccaggagt atttctcacg ttgctcgtgc ccagccaagg cgatcaacgc agaccggata
+     4381 gcgttagcta gcccacgggt aaaagcgatt gttgtactct ttcatatgaa tacagcactc
+     4441 gcgaatgcaa gcctacgtcg gctcgattct cttcctcacc acactggagg cgatgatcta
+     4501 gcccgtcttt caccccgtac ctttatactc ggccgcgtat ttctccaccg ggagctctgc
+     4561 ctaccaaagc gtcgtacgcc caggaagccg tttcctttat cctccctcat gtctcaacgc
+     4621 gcgagcatcg gagagtacgc gaaatcgact gtctggccaa cactggacag acgcgcgaga
+     4681 cactgataaa cccccatttt cgtggggtta gtaaatcggt ggcttcaaac ggttcgatcg
+     4741 ctcgcacgag cattagtcag gagtatgatt gcgcatcatc tctactccgt actaggttct
+     4801 gtagctcagg atctccgggg ggatcaagct tttatgtccc gcgggattag aagatatcca
+     4861 tccatatgtt tactttgatg cgggtccgag ctctctatga tgctgctttg acaaaatgtg
+     4921 gaaagcctca gcgaccgctc tggggtcaaa gctctacgac acgttgatgc taaacaagtt
+     4981 ggactactaa gcaaatgaag cggaagagat actgagcgct ct
+//
--- /dev/null	Thu Jan 01 00:00:00 1970 +0000
+++ b/test-data/init/example_assembly_plan_simulation/construct_2/provided_parts_records/partC.gb	Fri May 16 11:32:06 2025 +0000
@@ -0,0 +1,111 @@
+LOCUS       Exported                5022 bp    DNA     circular UNK 01-JAN-1980
+DEFINITION  natural circular DNA.
+ACCESSION   partC
+VERSION     partC
+KEYWORDS    .
+SOURCE      natural DNA sequence
+  ORGANISM  unspecified
+            .
+REFERENCE   1  (bases 1 to 5022)
+  AUTHORS   .
+  TITLE     Direct Submission
+  JOURNAL   Exported Thursday, Oct 17, 2019 from SnapGene Viewer 4.3.11
+            https://www.snapgene.com
+FEATURES             Location/Qualifiers
+     source          1..5022
+                     /organism="unspecified"
+                     /mol_type="genomic DNA"
+     misc_feature    22..2001
+                     /label="pC"
+                     /label="nonstandard type: annotation"
+     CDS             2123..3022
+                     /label="AmpR"
+     misc_feature    4023..4522
+                     /label="RepO_1"
+                     /label="nonstandard type: rep._origin"
+ORIGIN
+        1 cgtctcaggg caaagattac gatagaaaaa cactcgacac agagtagtat gataaaagtt
+       61 gggacggcat gctggactcg agaagtgtcg atccggcaat ccagatacgg caatggtacc
+      121 ggtcacacct cattctaaga gcagtcaggg gctgtcaggt ctacagggca ccggccctga
+      181 ggcccttggg ctagggtctg tcacccctat ctgcactgac tttaaagtaa ccgagcaata
+      241 agacaatcaa tcgcagggct ctggatcggg gtccgaaggc ggggtgcagt gtctccctaa
+      301 ttgttaagct caaaagagca gccactcgtt ctcgatcctt agtccatcgc cgtgaggtac
+      361 aagcagtaca cccacggaag gcccggcatt gaagatgcaa gaaatagagc actggggtga
+      421 cgacggcatg ctaaggtaag aaggcaaatt ctggaggact gacttcccca caagcggcgt
+      481 aagctcggat aagattggga taaacggacc acggcggctg gatcttcacc cctttgcacg
+      541 gtatgaaaac ggatcaggat tctcttccac ctattgcacc tgctgagaag agagcgctgg
+      601 ggggacgtta cttatcccaa tcgcgacgtc acggacaaca tcgtgttaca ggtcaggctc
+      661 gaaatcctag gcagctggta tccgacgcgc aagttatcta ccaaataagt taggcgatcg
+      721 aaatcatagg ctgtttagtg cttttcttgg tatcatcctg aacttctgtc acctccgagg
+      781 ccgaagcaac tattatgagg acgactcgat gattgtccgg agatgttgca ccccggcaag
+      841 cctagaaaac cccggtcctt tgagttttaa tctaatagta gaagttctcg gaaatcagag
+      901 ctggagactc ggtgacgtta tagaaatgtt cgcacgaaga gcgcgacatg tcctacttca
+      961 caagatgctt tctaggaggg gatctggatt ctcaagccct acacatggtc cgtggtgtat
+     1021 gttggatcgt agtgctttta ccgactatgt cgcgttaaat tgtctttcat ttctacaatt
+     1081 cggggagcat ggggccatgt gacttaggtt cagaaggtgc gagcgggcgt actacgtttg
+     1141 gtggtcgtgt ataatcagaa gaatcggcga tatccgctag caagcaaagt gtccttgacg
+     1201 cttgtggaaa tccaactatt tcctgcctct caagtgttta gaaaaatatc ccctggagga
+     1261 gatatcgctc ctctcttctg cgaccaacac cagttcaatt ccgcagtgca gcagtcctat
+     1321 tccgcatgga tcacgctgac gagatgcggg gttgagacta ccccaaaaga tatgttgaga
+     1381 taaattacca ggatggataa tctggtaccg gtgcgaaagg gtggttacac cagagtcgcc
+     1441 tgatgagctt atgcgcaatt tcaagtccct atgttttact atgaaagtac gaccgagccg
+     1501 ctagcctgag tcaaatagcg cagaatttgg gtcgtggaga tcgcgcttgt taacctggtc
+     1561 taggcgcatc tgagtcataa cggggttata acgactgtca acgtgtgacc gcatatcctg
+     1621 caaggcgaac aaataacgcc ccgcccaaaa tattacattt aagtagttat ctaactcccg
+     1681 gcatgcgggg catttggggg cagcgtgccc attccgcccc tatgcctgtt tcaacacgca
+     1741 accgtagaga ttggctagga tgggttttca cgagccaact gccacattag acatagaatt
+     1801 ccgataagta taagagatat cagcgaggtt cagggtagtt tggaacgaca gccggttcag
+     1861 aagttcagta tggtcattca tcatccgttg tgttgagtcc tttagatcgt ggctttatca
+     1921 tgcatgtctc ccgccagccc tcaaactatg tcgtcacgcg catgtttaca ttatatggaa
+     1981 caaaacgaga ggtagaagcc aatcactatc cggcaagaga cgctccacct gcgtctatcg
+     2041 tacagtgcta aaatggcagc agatagtgaa acttccgcta agctagcccc tcagggtaca
+     2101 ctgcaccgag gcgtgctgtc aatacttgat taagtcgggt tgtcggggac ctgccgtcac
+     2161 gcttccgagt gtatatccgg atttagttga cgtcatacag aggcactaag aagaataaac
+     2221 gcttacctcc agcaatcgtg tagtgtcagg tgtacgttct cccttgcgcc gttcggcaag
+     2281 cgtccggtgt cgggctgcaa ggaataaatc tttatggacc agaggggctt gtttcctcat
+     2341 atgggtgcgt gcacttatac gattcaaagg tggatatggc cgcataacac gtagccaggc
+     2401 tatagtcccg cggcctaatt ccttcgagtg cgggtgcctg tttttgtttt tcctttacga
+     2461 cacgaaccgc tctaacctgc tctatttcgc cacgttccag tgaacctctt agcctaccgc
+     2521 ccacgtacgg tgggacgcgt cgagcagtta aggtactgtg gagaaatcgt tcaatattag
+     2581 aaaacaggcg gtgtacgaat tactgtgtcc cggtgttgcc cgtttaacgg ctgccgtggt
+     2641 cataccgtga ggcaccacga ggggatgcta cgcaacatgc gaggtgtaat cagcagggaa
+     2701 gatcccgggg atcgaaagcg gtccgcgatt tgcgaccgat atgcataagg tgtcatttat
+     2761 attacaccta cgacactggt accggctcac agccaaatgc acagtctcaa gatagaattc
+     2821 gcaaaaatta ggcttatcgg gcgcttactc tttgttacac ttctggtctg tgagtgacgc
+     2881 cctgtgtccc atcactgcat gtgaggatgc gtgtactgca cctgtgaatt acagacgttt
+     2941 ccctaccagg gcgctacgtt ataatgttcg gttgcaaccc tctatagggt gatctcgaca
+     3001 taccactatg gtttgcgcgt ttcgggtgct tttggcgagg gccaggtacg gcggtgagac
+     3061 agcgtatttt gcgaataggg tattcggacg cacggtgtat agctcttgga aaacgactct
+     3121 tcgacgggcg tgtagaagta gccaagcagt tcggttgtta tcactaaatg cggaccatgt
+     3181 gcagccgttt aggagaggag tctgcaatgg atcagctggt cagattgtac cactcggttg
+     3241 agcctaaggc acttcaggtg ctcggattgt aatgaaccct caggttacgc cgttgcgctg
+     3301 agatcccaca agccataagc aatgagaatc gagcagctat cgaattacgc agcacttgct
+     3361 gatgaactgg gtgcacctaa agcgcccgat aaaacggagg gagtgaggta actactacat
+     3421 tgcgagtagt gcgaggggcc tccgagacta cattagagca gccatgccga atacgacaaa
+     3481 atctatagcc ttgcgaacgt aggggactga tttatggaca acaggaccga aacaagttgg
+     3541 agccacaacg gagctatgga cgttttcact attgatgggt ggcttgcgtc cgcatcccag
+     3601 gtttctctgg ttaattttca tgacgattct ttgtggtacg atccaggcat aagatagggc
+     3661 acctaacccg atactgtgaa cttatatgac ggctgaacat gccctaatag tctgccaaaa
+     3721 gggaaaccta taacggctct aaacgggccc cgggtacgta acagcaatgt tcctgtccac
+     3781 caaggcgttt ttagtaaccg ccgatcgatc tcgatcgaat tccgttttac gccccagatc
+     3841 gcagctccct tgacagtgtc agttgaatcc ccattctagg tttcctgata aaactaagta
+     3901 cggggacgca tcagtcgaaa gcaatcacag ataatagata tcttgagcag aaagacgtct
+     3961 tcacgaatca ggagcgagtg tcccctttga aagtgcgggc aacaataggt gtgaggtttc
+     4021 acggttgctt gatcagtagc tgttcactct ctcgcaggcc tacatagtga ggtggtgaga
+     4081 ttgttcaggt ctgtctcctg cgcggttgtc gagccccgtc gggcacgcta acaaggacag
+     4141 gaattcgggt cgtcaaataa caatttacgt catcgcatcc ctcaagggta aggcgtgatc
+     4201 tccatctcgg ttcccaattg gtcattgtga tagccacact gcagttaccg aaggcgattt
+     4261 tatactaccc tgataagtgc tcgcagcccc tcctccctaa taatgtaacg acgagcatta
+     4321 acccaggagt atttctcacg ttgctcgtgc ccagccaagg cgatcaacgc agaccggata
+     4381 gcgttagcta gcccacgggt aaaagcgatt gttgtactct ttcatatgaa tacagcactc
+     4441 gcgaatgcaa gcctacgtcg gctcgattct cttcctcacc acactggagg cgatgatcta
+     4501 gcccgtcttt caccccgtac ctttatactc ggccgcgtat ttctccaccg ggagctctgc
+     4561 ctaccaaagc gtcgtacgcc caggaagccg tttcctttat cctccctcat gtctcaacgc
+     4621 gcgagcatcg gagagtacgc gaaatcgact gtctggccaa cactggacag acgcgcgaga
+     4681 cactgataaa cccccatttt cgtggggtta gtaaatcggt ggcttcaaac ggttcgatcg
+     4741 ctcgcacgag cattagtcag gagtatgatt gcgcatcatc tctactccgt actaggttct
+     4801 gtagctcagg atctccgggg ggatcaagct tttatgtccc gcgggattag aagatatcca
+     4861 tccatatgtt tactttgatg cgggtccgag ctctctatga tgctgctttg acaaaatgtg
+     4921 gaaagcctca gcgaccgctc tggggtcaaa gctctacgac acgttgatgc taaacaagtt
+     4981 ggactactaa gcaaatgaag cggaagagat actgagcgct ct
+//
--- /dev/null	Thu Jan 01 00:00:00 1970 +0000
+++ b/test-data/init/example_assembly_plan_simulation/construct_2/provided_parts_records/receptor.gb	Fri May 16 11:32:06 2025 +0000
@@ -0,0 +1,75 @@
+LOCUS       Exported                3022 bp    DNA     circular UNK 01-JAN-1980
+DEFINITION  natural circular DNA.
+ACCESSION   receptor
+VERSION     receptor
+KEYWORDS    .
+SOURCE      natural DNA sequence
+  ORGANISM  unspecified
+            .
+REFERENCE   1  (bases 1 to 3022)
+  AUTHORS   .
+  TITLE     Direct Submission
+  JOURNAL   Exported Thursday, Oct 17, 2019 from SnapGene Viewer 4.3.11
+            https://www.snapgene.com
+FEATURES             Location/Qualifiers
+     source          1..3022
+                     /organism="unspecified"
+                     /mol_type="genomic DNA"
+     CDS             523..1222
+                     /label="KanR"
+     misc_feature    2023..2522
+                     /label="RepO_2"
+                     /label="nonstandard type: rep._origin"
+ORIGIN
+        1 attgagagac gcgtctcagg cactttcgct atatggcgac gtgcgaaaaa cgcgatttgg
+       61 ccgaaatctc aaataataat gcaatgtgtt ggctaagctc gggcaaactc aggatgtgac
+      121 ctagtaccct ctgccccgtg agtacccata cccaatcaag ccagcccaat tcgcgatagg
+      181 tacagataag ccttactcgt cccgatcctt gactaaaaca ctcatcctcg atagtacgtg
+      241 ccttgtagag tccgacggcc ataggtaaac gaccagttag tgtcgtaggg tcctccactt
+      301 tagctacgat tgcaactccc ttaccttcgt gccggcgcgc tcctcttgct accatcacgc
+      361 ttcaaatcgg gtggaagacc aactgatgaa tgagggtgca gaccccagtg gagcataata
+      421 cgatgcgccc acgatactct agagccacgc gtcgacgttc gtaagatgtc ccgggcccgt
+      481 gggtggccac atcggccgcc catccttgtg tcttccgata agtactccct ttcaaggact
+      541 ctccgatacc ggcttagaac acgaacggac aacgctttca gcgctgagaa atgacggctg
+      601 cttcaaccag aacgatacag ccttctttgc tagatagcct ctagtgtcag ccaccaagtc
+      661 cgccacctaa tccttcgccg agggtcaaag cttctgacca tccaattgtt aggcactctt
+      721 ggaaccttgc aagtacctga tcatgcagaa aatggacttg cccggagcat attcattata
+      781 agtaccattc acggcaggtt atagtatgcg ttgacgcggg gtgatacggt aatgcaagta
+      841 accatcgggc cgcggtatgc acatagaagg gtgtttgact tggtttctta cagtgcaact
+      901 gcatatgtgg accgccattc caagtgaaag gatacgaagg gaggtttcgg actgctatcc
+      961 agagcatgga aagccttcaa ggtggtgcgc actggaatag tgactcgggg attgtatgtc
+     1021 gagccgcgtc cagtctttcc tatacttatg cgagcaaata gaccgagtgg aacttgattg
+     1081 catcagccga atcacgatga aaactcagct tacaattcgt aagcacttca aatatatgcc
+     1141 cggaaaatcg ccgtccagtg acttgtaata gctccagggt cagtagcgct gccctggccg
+     1201 aaccaggtga cggttacgtg gacctcacag tatcaatgtt gcagtgcgcc accagattaa
+     1261 gctggccgtg tcatggtgaa caaccgtgat aaaagaacgg gagtatgaga gtgccaccca
+     1321 agagtggtac tccaggattc ggaaagggga gggggctttt cctgcttaac aaccttcctc
+     1381 ggcacggtct aagggtctca ctcgtcctaa actctaccat catgcagcta ggcgaaagta
+     1441 taactttagg gtctctcagg atgagctatc tgtaccacgg tgatgagata agtagggggt
+     1501 gcgctagggt cgttcgtgtt ttcatcgtct atagtaccta tttctcgtct tccattagcg
+     1561 catacggcca tctcgcggcg gctacgtcag ccagcgtcaa ccccaagtca ctaatttccg
+     1621 ttattatagg tgtagctcat aacttcttct gccgaccaag ccaaaagctt tgcggcagct
+     1681 gcaaggccac gttaggctct cggacggcag atatttatta ataacaccac tgggttccag
+     1741 ctcttaacgc acttcccttc actggatcac ctgtacgccc ataagctaag cctgaagcca
+     1801 cggcctcaat cgtggacatt actcttagca aatccacatt accatgtcac caatccccga
+     1861 accccgcgcc gacctaaggc ggggtacctc gtgcacggca gcatcgaggg aaatatatta
+     1921 caaaagacgc ggcgatccaa cggttgataa aaacagttcc gtggaaggcg gacgtgtgct
+     1981 tagcgcatgc ttctcaccga gtgacagcac cgattccatc tcgctagcac gccgatgagc
+     2041 ctcgctgtgg gactatggtc cagcctatgc ttaactaggc agaacagaga gtatggtggt
+     2101 cctcggtaag gtcgatttgg tggcactcgc aagatacgcg ggttattagt agagcgcagt
+     2161 cagggcccat cgccagcatt tgcatgctcg ccgtacgcta tccttgtact acggttcctc
+     2221 agtggctata aaggaatgtc acaactccat tagccccttt tgttcagcgc ttagtcatgg
+     2281 tgggactgac tcaccgagac tacatacgga ttgtgcccgc agagacctgc ctttcatgct
+     2341 ggggttttgt aagcagctcc acggggtagt gtcaccatgc cttcgaccta tgcttatgaa
+     2401 acccgaggta atgcggcagg atcccgtgga tcctacgctt agcctgttta agccatcgtt
+     2461 ctcctcggcc cccagccagc gcgtattccg cgcattcctc cgagtgcgta tcgcgcaaac
+     2521 cacaagatac ctctcaacga ctagcggtga accaccaagc ttgacatacg tgccccttcg
+     2581 gaaacgttat tagtggtcct gagtggtacg tcccgagtat acggggcagc gatagtaacg
+     2641 ctacaaatag ctaggcgagg ttgcgatacc tgaatgaata tccaacagtg gcaacgaggc
+     2701 gcttagaaag ggaaactaca taccagttca atccgggatg acttcaaaag ggtatgtttg
+     2761 ttttgaagcg aagctttggt tgtcattcag ttcctagagt ttacggcgct gatatggctc
+     2821 taggagtcca gtgaattcgt cagcataagc cccacatcgt aggaaattgc ccggtcgtcg
+     2881 gtctagcaaa tgctcggtaa actgggagtg tactaacacc atgtcgtggt aacccggtgg
+     2941 accggctact agagacatat ttattcatgc tcagttgaac ctgtttcgag ggggccgagt
+     3001 taacataaag tgattagtca ca
+//
Binary file test-data/init/example_assembly_plan_simulation/construct_3/construct_3_connections_graph.pdf has changed
--- /dev/null	Thu Jan 01 00:00:00 1970 +0000
+++ b/test-data/init/example_assembly_plan_simulation/construct_3/error.csv	Fri May 16 11:32:06 2025 +0000
@@ -0,0 +1,3 @@
+assembly_name;message;suggestion;data
+construct_3;Wrong number of constructs;expected_: 1,found: 0
+construct_3;Some parts are unused;unused_parts: partA & partA2 & partB & partC & receptor
\ No newline at end of file
Binary file test-data/init/example_assembly_plan_simulation/construct_3/fragments_in_construct_3_homology_mix/partA2_01.pdf has changed
Binary file test-data/init/example_assembly_plan_simulation/construct_3/fragments_in_construct_3_homology_mix/partA_01.pdf has changed
Binary file test-data/init/example_assembly_plan_simulation/construct_3/fragments_in_construct_3_homology_mix/partB_01.pdf has changed
Binary file test-data/init/example_assembly_plan_simulation/construct_3/fragments_in_construct_3_homology_mix/partC_01.pdf has changed
Binary file test-data/init/example_assembly_plan_simulation/construct_3/fragments_in_construct_3_homology_mix/receptor_01.pdf has changed
Binary file test-data/init/example_assembly_plan_simulation/construct_3/provided_parts_plots/partA.pdf has changed
Binary file test-data/init/example_assembly_plan_simulation/construct_3/provided_parts_plots/partA2.pdf has changed
Binary file test-data/init/example_assembly_plan_simulation/construct_3/provided_parts_plots/partB.pdf has changed
Binary file test-data/init/example_assembly_plan_simulation/construct_3/provided_parts_plots/partC.pdf has changed
Binary file test-data/init/example_assembly_plan_simulation/construct_3/provided_parts_plots/receptor.pdf has changed
--- /dev/null	Thu Jan 01 00:00:00 1970 +0000
+++ b/test-data/init/example_assembly_plan_simulation/construct_3/provided_parts_records/partA.gb	Fri May 16 11:32:06 2025 +0000
@@ -0,0 +1,95 @@
+LOCUS       Exported                4022 bp    DNA     circular UNK 01-JAN-1980
+DEFINITION  natural circular DNA.
+ACCESSION   partA
+VERSION     partA
+KEYWORDS    .
+SOURCE      natural DNA sequence
+  ORGANISM  unspecified
+            .
+REFERENCE   1  (bases 1 to 4022)
+  AUTHORS   .
+  TITLE     Direct Submission
+  JOURNAL   Exported Thursday, Oct 17, 2019 from SnapGene Viewer 4.3.11
+            https://www.snapgene.com
+FEATURES             Location/Qualifiers
+     source          1..4022
+                     /organism="unspecified"
+                     /mol_type="genomic DNA"
+     misc_feature    22..1001
+                     /label="pA"
+                     /label="nonstandard type: annotation"
+     CDS             1123..2022
+                     /label="AmpR"
+     misc_feature    3023..3522
+                     /label="RepO_1"
+                     /label="nonstandard type: rep._origin"
+ORIGIN
+        1 cgtctcaatt gtaagataga acagggatat agctcgttgc atccataaat tgcccaccgt
+       61 agggagaacg ccgttggaaa atgagagtta ggcgatgagc ggttgtcgcc cgcacagaca
+      121 aaggatgcct ttataaatag tagcggcctt gtctgcacca gacgtttgtg ggtcgacgtg
+      181 ctattctagc caaaagcaaa atgtatcata ctacaggcaa taggccctat gctgaccaaa
+      241 cttggggacc cttgcgcctt ctctcttacg cataacatgc ataggtacct ctactcatca
+      301 ggcagggcgg cgtgaggtca ctatggctca agatgtgtac gactaaagaa aggtttatgc
+      361 tccttcccca aggacgcatt tgggactgct acttgcccct agcgaattca ctaggatttt
+      421 tgtagaacca tgagcgccct atccgatagc acagagacaa tgctacaagc aactgtgcat
+      481 gcgctcgatc gccgtgcatt aatacgtatt atagcgtatc gtgtacgcta atatcttagt
+      541 gcaccgcacg ctggttggat acaattccgt gaaataattc ctgcttacac aggggctttc
+      601 tggcgcatgg ctgtgtctgg atgtttgtga taagaggctc catgaacccg gcgggaaatg
+      661 aggggaaacc ccggggagca acgacactaa gcctggcagt tgttcagata ggacgctttt
+      721 gtcagtgggc ggttttgcat ccactaacta tcataaacga cacaacgtcg aatgatcatc
+      781 ggcggtttgc atgtagagac agctcctgca acaccatacc ggctcgtgga attacgctgt
+      841 gcgccggccc tcattcgatt gtgtccagcg tcggcgcgaa tgatgattga gatgtgcttc
+      901 ggctcagagc gtgcacaggt agttctcccc ccttacctag ctgatccagc aattccacgc
+      961 tggcccgcgc gtccttgggt aacactggat ctgtacccaa atacaccgtc gggctagaga
+     1021 cgctccacct gcgtctatcg tacagtgcta aaatggcagc agatagtgaa acttccgcta
+     1081 agctagcccc tcagggtaca ctgcaccgag gcgtgctgtc aatacttgat taagtcgggt
+     1141 tgtcggggac ctgccgtcac gcttccgagt gtatatccgg atttagttga cgtcatacag
+     1201 aggcactaag aagaataaac gcttacctcc agcaatcgtg tagtgtcagg tgtacgttct
+     1261 cccttgcgcc gttcggcaag cgtccggtgt cgggctgcaa ggaataaatc tttatggacc
+     1321 agaggggctt gtttcctcat atgggtgcgt gcacttatac gattcaaagg tggatatggc
+     1381 cgcataacac gtagccaggc tatagtcccg cggcctaatt ccttcgagtg cgggtgcctg
+     1441 tttttgtttt tcctttacga cacgaaccgc tctaacctgc tctatttcgc cacgttccag
+     1501 tgaacctctt agcctaccgc ccacgtacgg tgggacgcgt cgagcagtta aggtactgtg
+     1561 gagaaatcgt tcaatattag aaaacaggcg gtgtacgaat tactgtgtcc cggtgttgcc
+     1621 cgtttaacgg ctgccgtggt cataccgtga ggcaccacga ggggatgcta cgcaacatgc
+     1681 gaggtgtaat cagcagggaa gatcccgggg atcgaaagcg gtccgcgatt tgcgaccgat
+     1741 atgcataagg tgtcatttat attacaccta cgacactggt accggctcac agccaaatgc
+     1801 acagtctcaa gatagaattc gcaaaaatta ggcttatcgg gcgcttactc tttgttacac
+     1861 ttctggtctg tgagtgacgc cctgtgtccc atcactgcat gtgaggatgc gtgtactgca
+     1921 cctgtgaatt acagacgttt ccctaccagg gcgctacgtt ataatgttcg gttgcaaccc
+     1981 tctatagggt gatctcgaca taccactatg gtttgcgcgt ttcgggtgct tttggcgagg
+     2041 gccaggtacg gcggtgagac agcgtatttt gcgaataggg tattcggacg cacggtgtat
+     2101 agctcttgga aaacgactct tcgacgggcg tgtagaagta gccaagcagt tcggttgtta
+     2161 tcactaaatg cggaccatgt gcagccgttt aggagaggag tctgcaatgg atcagctggt
+     2221 cagattgtac cactcggttg agcctaaggc acttcaggtg ctcggattgt aatgaaccct
+     2281 caggttacgc cgttgcgctg agatcccaca agccataagc aatgagaatc gagcagctat
+     2341 cgaattacgc agcacttgct gatgaactgg gtgcacctaa agcgcccgat aaaacggagg
+     2401 gagtgaggta actactacat tgcgagtagt gcgaggggcc tccgagacta cattagagca
+     2461 gccatgccga atacgacaaa atctatagcc ttgcgaacgt aggggactga tttatggaca
+     2521 acaggaccga aacaagttgg agccacaacg gagctatgga cgttttcact attgatgggt
+     2581 ggcttgcgtc cgcatcccag gtttctctgg ttaattttca tgacgattct ttgtggtacg
+     2641 atccaggcat aagatagggc acctaacccg atactgtgaa cttatatgac ggctgaacat
+     2701 gccctaatag tctgccaaaa gggaaaccta taacggctct aaacgggccc cgggtacgta
+     2761 acagcaatgt tcctgtccac caaggcgttt ttagtaaccg ccgatcgatc tcgatcgaat
+     2821 tccgttttac gccccagatc gcagctccct tgacagtgtc agttgaatcc ccattctagg
+     2881 tttcctgata aaactaagta cggggacgca tcagtcgaaa gcaatcacag ataatagata
+     2941 tcttgagcag aaagacgtct tcacgaatca ggagcgagtg tcccctttga aagtgcgggc
+     3001 aacaataggt gtgaggtttc acggttgctt gatcagtagc tgttcactct ctcgcaggcc
+     3061 tacatagtga ggtggtgaga ttgttcaggt ctgtctcctg cgcggttgtc gagccccgtc
+     3121 gggcacgcta acaaggacag gaattcgggt cgtcaaataa caatttacgt catcgcatcc
+     3181 ctcaagggta aggcgtgatc tccatctcgg ttcccaattg gtcattgtga tagccacact
+     3241 gcagttaccg aaggcgattt tatactaccc tgataagtgc tcgcagcccc tcctccctaa
+     3301 taatgtaacg acgagcatta acccaggagt atttctcacg ttgctcgtgc ccagccaagg
+     3361 cgatcaacgc agaccggata gcgttagcta gcccacgggt aaaagcgatt gttgtactct
+     3421 ttcatatgaa tacagcactc gcgaatgcaa gcctacgtcg gctcgattct cttcctcacc
+     3481 acactggagg cgatgatcta gcccgtcttt caccccgtac ctttatactc ggccgcgtat
+     3541 ttctccaccg ggagctctgc ctaccaaagc gtcgtacgcc caggaagccg tttcctttat
+     3601 cctccctcat gtctcaacgc gcgagcatcg gagagtacgc gaaatcgact gtctggccaa
+     3661 cactggacag acgcgcgaga cactgataaa cccccatttt cgtggggtta gtaaatcggt
+     3721 ggcttcaaac ggttcgatcg ctcgcacgag cattagtcag gagtatgatt gcgcatcatc
+     3781 tctactccgt actaggttct gtagctcagg atctccgggg ggatcaagct tttatgtccc
+     3841 gcgggattag aagatatcca tccatatgtt tactttgatg cgggtccgag ctctctatga
+     3901 tgctgctttg acaaaatgtg gaaagcctca gcgaccgctc tggggtcaaa gctctacgac
+     3961 acgttgatgc taaacaagtt ggactactaa gcaaatgaag cggaagagat actgagcgct
+     4021 ct
+//
--- /dev/null	Thu Jan 01 00:00:00 1970 +0000
+++ b/test-data/init/example_assembly_plan_simulation/construct_3/provided_parts_records/partA2.gb	Fri May 16 11:32:06 2025 +0000
@@ -0,0 +1,95 @@
+LOCUS       Exported                4022 bp    DNA     circular UNK 01-JAN-1980
+DEFINITION  natural circular DNA.
+ACCESSION   partA2
+VERSION     partA2
+KEYWORDS    .
+SOURCE      natural DNA sequence
+  ORGANISM  unspecified
+            .
+REFERENCE   1  (bases 1 to 4022)
+  AUTHORS   .
+  TITLE     Direct Submission
+  JOURNAL   Exported Thursday, Oct 17, 2019 from SnapGene Viewer 4.3.11
+            https://www.snapgene.com
+FEATURES             Location/Qualifiers
+     source          1..4022
+                     /organism="unspecified"
+                     /mol_type="genomic DNA"
+     misc_feature    22..1001
+                     /label="pA2"
+                     /label="nonstandard type: annotation"
+     CDS             1123..2022
+                     /label="AmpR"
+     misc_feature    3023..3522
+                     /label="RepO_1"
+                     /label="nonstandard type: rep._origin"
+ORIGIN
+        1 cgtctcaatt gtaagataga acagggatat agctcgttgc atccataaat tgcccaccgt
+       61 agggagaacg ccgttggaaa atgagagtta ggcgatgagc ggttgtcgcc cgcacagaca
+      121 aaggatgcct ttataaatag tagcggcctt gtctgcacca gacgtttgtg ggtcgacgtg
+      181 ctattctagc caaaagcaaa atgtatcata ctacaggcaa taggccctat gctgaccaaa
+      241 cttggggacc cttgcgcctt ctctcttacg cataacatgc ataggtacct ctactcatca
+      301 ggcagggcgg cgtgaggtca ctatggctca agatgtgtac gactaaagaa aggtttatgc
+      361 tccttcccca aggacgcatt tgggactgct acttgcccct agcgaattca ctaggatttt
+      421 tgtagaacca tgagcgccct atccgatagc acagagacaa tgctacaagc aactgtgcat
+      481 gcgctcgatc gccgtgcatt aatacgtatt atagagtatc gtgtacgcta atatcttagt
+      541 gcaccgcacg ctggttggat acaattccgt gaaataattc ctgcttacac aggggctttc
+      601 tggcgcatgg ctgtgtctgg atgtttgtga taagaggctc caagaacccg gcgggaaatg
+      661 aggggaaacc ccggggagca acgacactaa gcctggcagt tgttcagata ggacgctttt
+      721 gtcagtgggc ggttttgcat ccactaacta tcataaacga cacaacgtcg aatgatcatc
+      781 ggcggtttgc atgtagagac agctcctgca acaccatacc ggctcgtgga attacgctgt
+      841 gcgccggccc tcattcgatt gtgtccagcg tcggcgcgaa tgatgattga gatgtgcttc
+      901 ggctcagagc gtgcacaggt agttctcccc ccttacctag ctaatccagc aattccacgc
+      961 tggcccgcgc gtccttgggt aacactggat ctgtacccaa atacaccgtc gggctagaga
+     1021 cgctccacct gcgtctatcg tacagtgcta aaatggcagc agatagtgaa acttccgcta
+     1081 agctagcccc tcagggtaca ctgcaccgag gcgtgctgtc aatacttgat taagtcgggt
+     1141 tgtcggggac ctgccgtcac gcttccgagt gtatatccgg atttagttga cgtcatacag
+     1201 aggcactaag aagaataaac gcttacctcc agcaatcgtg tagtgtcagg tgtacgttct
+     1261 cccttgcgcc gttcggcaag cgtccggtgt cgggctgcaa ggaataaatc tttatggacc
+     1321 agaggggctt gtttcctcat atgggtgcgt gcacttatac gattcaaagg tggatatggc
+     1381 cgcataacac gtagccaggc tatagtcccg cggcctaatt ccttcgagtg cgggtgcctg
+     1441 tttttgtttt tcctttacga cacgaaccgc tctaacctgc tctatttcgc cacgttccag
+     1501 tgaacctctt agcctaccgc ccacgtacgg tgggacgcgt cgagcagtta aggtactgtg
+     1561 gagaaatcgt tcaatattag aaaacaggcg gtgtacgaat tactgtgtcc cggtgttgcc
+     1621 cgtttaacgg ctgccgtggt cataccgtga ggcaccacga ggggatgcta cgcaacatgc
+     1681 gaggtgtaat cagcagggaa gatcccgggg atcgaaagcg gtccgcgatt tgcgaccgat
+     1741 atgcataagg tgtcatttat attacaccta cgacactggt accggctcac agccaaatgc
+     1801 acagtctcaa gatagaattc gcaaaaatta ggcttatcgg gcgcttactc tttgttacac
+     1861 ttctggtctg tgagtgacgc cctgtgtccc atcactgcat gtgaggatgc gtgtactgca
+     1921 cctgtgaatt acagacgttt ccctaccagg gcgctacgtt ataatgttcg gttgcaaccc
+     1981 tctatagggt gatctcgaca taccactatg gtttgcgcgt ttcgggtgct tttggcgagg
+     2041 gccaggtacg gcggtgagac agcgtatttt gcgaataggg tattcggacg cacggtgtat
+     2101 agctcttgga aaacgactct tcgacgggcg tgtagaagta gccaagcagt tcggttgtta
+     2161 tcactaaatg cggaccatgt gcagccgttt aggagaggag tctgcaatgg atcagctggt
+     2221 cagattgtac cactcggttg agcctaaggc acttcaggtg ctcggattgt aatgaaccct
+     2281 caggttacgc cgttgcgctg agatcccaca agccataagc aatgagaatc gagcagctat
+     2341 cgaattacgc agcacttgct gatgaactgg gtgcacctaa agcgcccgat aaaacggagg
+     2401 gagtgaggta actactacat tgcgagtagt gcgaggggcc tccgagacta cattagagca
+     2461 gccatgccga atacgacaaa atctatagcc ttgcgaacgt aggggactga tttatggaca
+     2521 acaggaccga aacaagttgg agccacaacg gagctatgga cgttttcact attgatgggt
+     2581 ggcttgcgtc cgcatcccag gtttctctgg ttaattttca tgacgattct ttgtggtacg
+     2641 atccaggcat aagatagggc acctaacccg atactgtgaa cttatatgac ggctgaacat
+     2701 gccctaatag tctgccaaaa gggaaaccta taacggctct aaacgggccc cgggtacgta
+     2761 acagcaatgt tcctgtccac caaggcgttt ttagtaaccg ccgatcgatc tcgatcgaat
+     2821 tccgttttac gccccagatc gcagctccct tgacagtgtc agttgaatcc ccattctagg
+     2881 tttcctgata aaactaagta cggggacgca tcagtcgaaa gcaatcacag ataatagata
+     2941 tcttgagcag aaagacgtct tcacgaatca ggagcgagtg tcccctttga aagtgcgggc
+     3001 aacaataggt gtgaggtttc acggttgctt gatcagtagc tgttcactct ctcgcaggcc
+     3061 tacatagtga ggtggtgaga ttgttcaggt ctgtctcctg cgcggttgtc gagccccgtc
+     3121 gggcacgcta acaaggacag gaattcgggt cgtcaaataa caatttacgt catcgcatcc
+     3181 ctcaagggta aggcgtgatc tccatctcgg ttcccaattg gtcattgtga tagccacact
+     3241 gcagttaccg aaggcgattt tatactaccc tgataagtgc tcgcagcccc tcctccctaa
+     3301 taatgtaacg acgagcatta acccaggagt atttctcacg ttgctcgtgc ccagccaagg
+     3361 cgatcaacgc agaccggata gcgttagcta gcccacgggt aaaagcgatt gttgtactct
+     3421 ttcatatgaa tacagcactc gcgaatgcaa gcctacgtcg gctcgattct cttcctcacc
+     3481 acactggagg cgatgatcta gcccgtcttt caccccgtac ctttatactc ggccgcgtat
+     3541 ttctccaccg ggagctctgc ctaccaaagc gtcgtacgcc caggaagccg tttcctttat
+     3601 cctccctcat gtctcaacgc gcgagcatcg gagagtacgc gaaatcgact gtctggccaa
+     3661 cactggacag acgcgcgaga cactgataaa cccccatttt cgtggggtta gtaaatcggt
+     3721 ggcttcaaac ggttcgatcg ctcgcacgag cattagtcag gagtatgatt gcgcatcatc
+     3781 tctactccgt actaggttct gtagctcagg atctccgggg ggatcaagct tttatgtccc
+     3841 gcgggattag aagatatcca tccatatgtt tactttgatg cgggtccgag ctctctatga
+     3901 tgctgctttg acaaaatgtg gaaagcctca gcgaccgctc tggggtcaaa gctctacgac
+     3961 acgttgatgc taaacaagtt ggactactaa gcaaatgaag cggaagagat actgagcgct
+     4021 ct
+//
--- /dev/null	Thu Jan 01 00:00:00 1970 +0000
+++ b/test-data/init/example_assembly_plan_simulation/construct_3/provided_parts_records/partB.gb	Fri May 16 11:32:06 2025 +0000
@@ -0,0 +1,111 @@
+LOCUS       Exported                5022 bp    DNA     circular UNK 01-JAN-1980
+DEFINITION  natural circular DNA.
+ACCESSION   partB
+VERSION     partB
+KEYWORDS    .
+SOURCE      natural DNA sequence
+  ORGANISM  unspecified
+            .
+REFERENCE   1  (bases 1 to 5022)
+  AUTHORS   .
+  TITLE     Direct Submission
+  JOURNAL   Exported Thursday, Oct 17, 2019 from SnapGene Viewer 4.3.11
+            https://www.snapgene.com
+FEATURES             Location/Qualifiers
+     source          1..5022
+                     /organism="unspecified"
+                     /mol_type="genomic DNA"
+     misc_feature    22..2001
+                     /label="pB"
+                     /label="nonstandard type: annotation"
+     CDS             2123..3022
+                     /label="AmpR"
+     misc_feature    4023..4522
+                     /label="RepO_1"
+                     /label="nonstandard type: rep._origin"
+ORIGIN
+        1 cgtctcaggc ttgattgtta actaccgtat ggcggttacg atcgagtgac actattatta
+       61 gaccgctact ccaagtccca acttttcatc gccatacaga agagaacgag aaagtcgaag
+      121 agttatagcg tgtacacttc tgattagcta acgaatcgat gcgtacagca tactcgagca
+      181 actttatggg tcgtctgtct ccttgtaccc cgcttgacga ggatgtgttt gtaggcggct
+      241 tggatatcgg cagtgtatcc gcatggtcaa acactttagc ccgaccggtg ctcaaggtcg
+      301 aaatcctaat atagattggg ataggacccg tccattacta ggcgacattc gcagtcacga
+      361 gcccgcacgg ggtgcctcaa cacggtgaca ctcaattcgc cggcactgag tacgacgatc
+      421 gtgattgcca taccgtcatg ttttgtgtta cccctgataa gaagcgcaga tatggcacgg
+      481 gggcagaggg cggagtagac ccatgcaaaa ctctagcctc tgggcagcat gatcgacgta
+      541 gaacgccgtt gtgactcact agtttcagtt atgatgttca gccaagaatc ctccattttg
+      601 acgtgaacct tctcccttta caccttgaag ctgcaatatt aagtcgaccc tttaagttgc
+      661 cttgtcttgg tctagagccc gcagctcacc gataaaatga gcagtcaatt ttagcggcgg
+      721 ttgtccaggt tacatgcact ttgggctgga accgcgttac gtttggagta cttagaagtg
+      781 tcgtaggcat aggagagccg aaacttgata ttgggtctag ttagtgctct accccgcttc
+      841 ggatccgtaa tagtgatgtt gcataagacg cttgcctcaa ggcgacatac ggtggcggtt
+      901 gctggaaatg acgccccacc ccgtgataat ttggggacga gccgcacgat aacttctgcc
+      961 agcgaccgcc cctcccacgt ccgatggtga ttccgaattt tgattacatg ccagacacgc
+     1021 tttaatctcg ccaccacatt ggcaccccca ccaagtaatg tatgtaagaa gcagctgcgc
+     1081 cccaagttac gtgccgtttc cgatgggagc agcaataatg tcgatagcaa ccacccccct
+     1141 ctctactgac gaagcaacac cggggacacc gtcaccttgg cttcatttcg tattcattca
+     1201 cctacgcaca accgcctgac cgttcgttat cacgagccta tccccttcaa gcaatttccc
+     1261 ccccttgttc agcagcctac actatacgtt ggtacactgt gtgcgacaga tatttggtgc
+     1321 ccgtcttatt ctattctgag agagtttaat agccaaaaga tatgagtagg aacgggaggt
+     1381 acccgactcg cgttgaagca ctcttaagac ctctcttagc acttcgaagg gtaggtgcgt
+     1441 tcaaagaacc tctgctttta actaagatca aaaggattgc gtacaacttc cccgttaact
+     1501 ctccagagga tccgtagaag tctacaccaa aatacgtttg gtttcgccaa ggtgactatc
+     1561 ggtacttgtg cacgtaacag ggtaaagaat tgaaagcctc aaattgtacg acgttacgcc
+     1621 cggacggtcg ccggtgatag ggtgacgcat ttgcgtttgt catatcattt gggattagac
+     1681 ggagctggtg tacctctatg gacgttacaa aaccttgtgg taacagcctg ggtgccatcc
+     1741 acctagtccg aagtttcctt ctaaccgcgg catcagatgg atatgtacct tatggcgctt
+     1801 cccgggaagt ccaattcttc gtgttgaagg gacagctcta caggcctggc cacttgtggc
+     1861 gcatctaagt agtctaggtg catgattctc tcccttgggg gcgctgtcgt gggtcctgcc
+     1921 gagccacacc ctaacctcac gtcgcaagac ttggtaaata gctttttttt ttatgcccaa
+     1981 tctatttacg taacaatcga catcagagga ggggcagaga cgctccacct gcgtctatcg
+     2041 tacagtgcta aaatggcagc agatagtgaa acttccgcta agctagcccc tcagggtaca
+     2101 ctgcaccgag gcgtgctgtc aatacttgat taagtcgggt tgtcggggac ctgccgtcac
+     2161 gcttccgagt gtatatccgg atttagttga cgtcatacag aggcactaag aagaataaac
+     2221 gcttacctcc agcaatcgtg tagtgtcagg tgtacgttct cccttgcgcc gttcggcaag
+     2281 cgtccggtgt cgggctgcaa ggaataaatc tttatggacc agaggggctt gtttcctcat
+     2341 atgggtgcgt gcacttatac gattcaaagg tggatatggc cgcataacac gtagccaggc
+     2401 tatagtcccg cggcctaatt ccttcgagtg cgggtgcctg tttttgtttt tcctttacga
+     2461 cacgaaccgc tctaacctgc tctatttcgc cacgttccag tgaacctctt agcctaccgc
+     2521 ccacgtacgg tgggacgcgt cgagcagtta aggtactgtg gagaaatcgt tcaatattag
+     2581 aaaacaggcg gtgtacgaat tactgtgtcc cggtgttgcc cgtttaacgg ctgccgtggt
+     2641 cataccgtga ggcaccacga ggggatgcta cgcaacatgc gaggtgtaat cagcagggaa
+     2701 gatcccgggg atcgaaagcg gtccgcgatt tgcgaccgat atgcataagg tgtcatttat
+     2761 attacaccta cgacactggt accggctcac agccaaatgc acagtctcaa gatagaattc
+     2821 gcaaaaatta ggcttatcgg gcgcttactc tttgttacac ttctggtctg tgagtgacgc
+     2881 cctgtgtccc atcactgcat gtgaggatgc gtgtactgca cctgtgaatt acagacgttt
+     2941 ccctaccagg gcgctacgtt ataatgttcg gttgcaaccc tctatagggt gatctcgaca
+     3001 taccactatg gtttgcgcgt ttcgggtgct tttggcgagg gccaggtacg gcggtgagac
+     3061 agcgtatttt gcgaataggg tattcggacg cacggtgtat agctcttgga aaacgactct
+     3121 tcgacgggcg tgtagaagta gccaagcagt tcggttgtta tcactaaatg cggaccatgt
+     3181 gcagccgttt aggagaggag tctgcaatgg atcagctggt cagattgtac cactcggttg
+     3241 agcctaaggc acttcaggtg ctcggattgt aatgaaccct caggttacgc cgttgcgctg
+     3301 agatcccaca agccataagc aatgagaatc gagcagctat cgaattacgc agcacttgct
+     3361 gatgaactgg gtgcacctaa agcgcccgat aaaacggagg gagtgaggta actactacat
+     3421 tgcgagtagt gcgaggggcc tccgagacta cattagagca gccatgccga atacgacaaa
+     3481 atctatagcc ttgcgaacgt aggggactga tttatggaca acaggaccga aacaagttgg
+     3541 agccacaacg gagctatgga cgttttcact attgatgggt ggcttgcgtc cgcatcccag
+     3601 gtttctctgg ttaattttca tgacgattct ttgtggtacg atccaggcat aagatagggc
+     3661 acctaacccg atactgtgaa cttatatgac ggctgaacat gccctaatag tctgccaaaa
+     3721 gggaaaccta taacggctct aaacgggccc cgggtacgta acagcaatgt tcctgtccac
+     3781 caaggcgttt ttagtaaccg ccgatcgatc tcgatcgaat tccgttttac gccccagatc
+     3841 gcagctccct tgacagtgtc agttgaatcc ccattctagg tttcctgata aaactaagta
+     3901 cggggacgca tcagtcgaaa gcaatcacag ataatagata tcttgagcag aaagacgtct
+     3961 tcacgaatca ggagcgagtg tcccctttga aagtgcgggc aacaataggt gtgaggtttc
+     4021 acggttgctt gatcagtagc tgttcactct ctcgcaggcc tacatagtga ggtggtgaga
+     4081 ttgttcaggt ctgtctcctg cgcggttgtc gagccccgtc gggcacgcta acaaggacag
+     4141 gaattcgggt cgtcaaataa caatttacgt catcgcatcc ctcaagggta aggcgtgatc
+     4201 tccatctcgg ttcccaattg gtcattgtga tagccacact gcagttaccg aaggcgattt
+     4261 tatactaccc tgataagtgc tcgcagcccc tcctccctaa taatgtaacg acgagcatta
+     4321 acccaggagt atttctcacg ttgctcgtgc ccagccaagg cgatcaacgc agaccggata
+     4381 gcgttagcta gcccacgggt aaaagcgatt gttgtactct ttcatatgaa tacagcactc
+     4441 gcgaatgcaa gcctacgtcg gctcgattct cttcctcacc acactggagg cgatgatcta
+     4501 gcccgtcttt caccccgtac ctttatactc ggccgcgtat ttctccaccg ggagctctgc
+     4561 ctaccaaagc gtcgtacgcc caggaagccg tttcctttat cctccctcat gtctcaacgc
+     4621 gcgagcatcg gagagtacgc gaaatcgact gtctggccaa cactggacag acgcgcgaga
+     4681 cactgataaa cccccatttt cgtggggtta gtaaatcggt ggcttcaaac ggttcgatcg
+     4741 ctcgcacgag cattagtcag gagtatgatt gcgcatcatc tctactccgt actaggttct
+     4801 gtagctcagg atctccgggg ggatcaagct tttatgtccc gcgggattag aagatatcca
+     4861 tccatatgtt tactttgatg cgggtccgag ctctctatga tgctgctttg acaaaatgtg
+     4921 gaaagcctca gcgaccgctc tggggtcaaa gctctacgac acgttgatgc taaacaagtt
+     4981 ggactactaa gcaaatgaag cggaagagat actgagcgct ct
+//
--- /dev/null	Thu Jan 01 00:00:00 1970 +0000
+++ b/test-data/init/example_assembly_plan_simulation/construct_3/provided_parts_records/partC.gb	Fri May 16 11:32:06 2025 +0000
@@ -0,0 +1,111 @@
+LOCUS       Exported                5022 bp    DNA     circular UNK 01-JAN-1980
+DEFINITION  natural circular DNA.
+ACCESSION   partC
+VERSION     partC
+KEYWORDS    .
+SOURCE      natural DNA sequence
+  ORGANISM  unspecified
+            .
+REFERENCE   1  (bases 1 to 5022)
+  AUTHORS   .
+  TITLE     Direct Submission
+  JOURNAL   Exported Thursday, Oct 17, 2019 from SnapGene Viewer 4.3.11
+            https://www.snapgene.com
+FEATURES             Location/Qualifiers
+     source          1..5022
+                     /organism="unspecified"
+                     /mol_type="genomic DNA"
+     misc_feature    22..2001
+                     /label="pC"
+                     /label="nonstandard type: annotation"
+     CDS             2123..3022
+                     /label="AmpR"
+     misc_feature    4023..4522
+                     /label="RepO_1"
+                     /label="nonstandard type: rep._origin"
+ORIGIN
+        1 cgtctcaggg caaagattac gatagaaaaa cactcgacac agagtagtat gataaaagtt
+       61 gggacggcat gctggactcg agaagtgtcg atccggcaat ccagatacgg caatggtacc
+      121 ggtcacacct cattctaaga gcagtcaggg gctgtcaggt ctacagggca ccggccctga
+      181 ggcccttggg ctagggtctg tcacccctat ctgcactgac tttaaagtaa ccgagcaata
+      241 agacaatcaa tcgcagggct ctggatcggg gtccgaaggc ggggtgcagt gtctccctaa
+      301 ttgttaagct caaaagagca gccactcgtt ctcgatcctt agtccatcgc cgtgaggtac
+      361 aagcagtaca cccacggaag gcccggcatt gaagatgcaa gaaatagagc actggggtga
+      421 cgacggcatg ctaaggtaag aaggcaaatt ctggaggact gacttcccca caagcggcgt
+      481 aagctcggat aagattggga taaacggacc acggcggctg gatcttcacc cctttgcacg
+      541 gtatgaaaac ggatcaggat tctcttccac ctattgcacc tgctgagaag agagcgctgg
+      601 ggggacgtta cttatcccaa tcgcgacgtc acggacaaca tcgtgttaca ggtcaggctc
+      661 gaaatcctag gcagctggta tccgacgcgc aagttatcta ccaaataagt taggcgatcg
+      721 aaatcatagg ctgtttagtg cttttcttgg tatcatcctg aacttctgtc acctccgagg
+      781 ccgaagcaac tattatgagg acgactcgat gattgtccgg agatgttgca ccccggcaag
+      841 cctagaaaac cccggtcctt tgagttttaa tctaatagta gaagttctcg gaaatcagag
+      901 ctggagactc ggtgacgtta tagaaatgtt cgcacgaaga gcgcgacatg tcctacttca
+      961 caagatgctt tctaggaggg gatctggatt ctcaagccct acacatggtc cgtggtgtat
+     1021 gttggatcgt agtgctttta ccgactatgt cgcgttaaat tgtctttcat ttctacaatt
+     1081 cggggagcat ggggccatgt gacttaggtt cagaaggtgc gagcgggcgt actacgtttg
+     1141 gtggtcgtgt ataatcagaa gaatcggcga tatccgctag caagcaaagt gtccttgacg
+     1201 cttgtggaaa tccaactatt tcctgcctct caagtgttta gaaaaatatc ccctggagga
+     1261 gatatcgctc ctctcttctg cgaccaacac cagttcaatt ccgcagtgca gcagtcctat
+     1321 tccgcatgga tcacgctgac gagatgcggg gttgagacta ccccaaaaga tatgttgaga
+     1381 taaattacca ggatggataa tctggtaccg gtgcgaaagg gtggttacac cagagtcgcc
+     1441 tgatgagctt atgcgcaatt tcaagtccct atgttttact atgaaagtac gaccgagccg
+     1501 ctagcctgag tcaaatagcg cagaatttgg gtcgtggaga tcgcgcttgt taacctggtc
+     1561 taggcgcatc tgagtcataa cggggttata acgactgtca acgtgtgacc gcatatcctg
+     1621 caaggcgaac aaataacgcc ccgcccaaaa tattacattt aagtagttat ctaactcccg
+     1681 gcatgcgggg catttggggg cagcgtgccc attccgcccc tatgcctgtt tcaacacgca
+     1741 accgtagaga ttggctagga tgggttttca cgagccaact gccacattag acatagaatt
+     1801 ccgataagta taagagatat cagcgaggtt cagggtagtt tggaacgaca gccggttcag
+     1861 aagttcagta tggtcattca tcatccgttg tgttgagtcc tttagatcgt ggctttatca
+     1921 tgcatgtctc ccgccagccc tcaaactatg tcgtcacgcg catgtttaca ttatatggaa
+     1981 caaaacgaga ggtagaagcc aatcactatc cggcaagaga cgctccacct gcgtctatcg
+     2041 tacagtgcta aaatggcagc agatagtgaa acttccgcta agctagcccc tcagggtaca
+     2101 ctgcaccgag gcgtgctgtc aatacttgat taagtcgggt tgtcggggac ctgccgtcac
+     2161 gcttccgagt gtatatccgg atttagttga cgtcatacag aggcactaag aagaataaac
+     2221 gcttacctcc agcaatcgtg tagtgtcagg tgtacgttct cccttgcgcc gttcggcaag
+     2281 cgtccggtgt cgggctgcaa ggaataaatc tttatggacc agaggggctt gtttcctcat
+     2341 atgggtgcgt gcacttatac gattcaaagg tggatatggc cgcataacac gtagccaggc
+     2401 tatagtcccg cggcctaatt ccttcgagtg cgggtgcctg tttttgtttt tcctttacga
+     2461 cacgaaccgc tctaacctgc tctatttcgc cacgttccag tgaacctctt agcctaccgc
+     2521 ccacgtacgg tgggacgcgt cgagcagtta aggtactgtg gagaaatcgt tcaatattag
+     2581 aaaacaggcg gtgtacgaat tactgtgtcc cggtgttgcc cgtttaacgg ctgccgtggt
+     2641 cataccgtga ggcaccacga ggggatgcta cgcaacatgc gaggtgtaat cagcagggaa
+     2701 gatcccgggg atcgaaagcg gtccgcgatt tgcgaccgat atgcataagg tgtcatttat
+     2761 attacaccta cgacactggt accggctcac agccaaatgc acagtctcaa gatagaattc
+     2821 gcaaaaatta ggcttatcgg gcgcttactc tttgttacac ttctggtctg tgagtgacgc
+     2881 cctgtgtccc atcactgcat gtgaggatgc gtgtactgca cctgtgaatt acagacgttt
+     2941 ccctaccagg gcgctacgtt ataatgttcg gttgcaaccc tctatagggt gatctcgaca
+     3001 taccactatg gtttgcgcgt ttcgggtgct tttggcgagg gccaggtacg gcggtgagac
+     3061 agcgtatttt gcgaataggg tattcggacg cacggtgtat agctcttgga aaacgactct
+     3121 tcgacgggcg tgtagaagta gccaagcagt tcggttgtta tcactaaatg cggaccatgt
+     3181 gcagccgttt aggagaggag tctgcaatgg atcagctggt cagattgtac cactcggttg
+     3241 agcctaaggc acttcaggtg ctcggattgt aatgaaccct caggttacgc cgttgcgctg
+     3301 agatcccaca agccataagc aatgagaatc gagcagctat cgaattacgc agcacttgct
+     3361 gatgaactgg gtgcacctaa agcgcccgat aaaacggagg gagtgaggta actactacat
+     3421 tgcgagtagt gcgaggggcc tccgagacta cattagagca gccatgccga atacgacaaa
+     3481 atctatagcc ttgcgaacgt aggggactga tttatggaca acaggaccga aacaagttgg
+     3541 agccacaacg gagctatgga cgttttcact attgatgggt ggcttgcgtc cgcatcccag
+     3601 gtttctctgg ttaattttca tgacgattct ttgtggtacg atccaggcat aagatagggc
+     3661 acctaacccg atactgtgaa cttatatgac ggctgaacat gccctaatag tctgccaaaa
+     3721 gggaaaccta taacggctct aaacgggccc cgggtacgta acagcaatgt tcctgtccac
+     3781 caaggcgttt ttagtaaccg ccgatcgatc tcgatcgaat tccgttttac gccccagatc
+     3841 gcagctccct tgacagtgtc agttgaatcc ccattctagg tttcctgata aaactaagta
+     3901 cggggacgca tcagtcgaaa gcaatcacag ataatagata tcttgagcag aaagacgtct
+     3961 tcacgaatca ggagcgagtg tcccctttga aagtgcgggc aacaataggt gtgaggtttc
+     4021 acggttgctt gatcagtagc tgttcactct ctcgcaggcc tacatagtga ggtggtgaga
+     4081 ttgttcaggt ctgtctcctg cgcggttgtc gagccccgtc gggcacgcta acaaggacag
+     4141 gaattcgggt cgtcaaataa caatttacgt catcgcatcc ctcaagggta aggcgtgatc
+     4201 tccatctcgg ttcccaattg gtcattgtga tagccacact gcagttaccg aaggcgattt
+     4261 tatactaccc tgataagtgc tcgcagcccc tcctccctaa taatgtaacg acgagcatta
+     4321 acccaggagt atttctcacg ttgctcgtgc ccagccaagg cgatcaacgc agaccggata
+     4381 gcgttagcta gcccacgggt aaaagcgatt gttgtactct ttcatatgaa tacagcactc
+     4441 gcgaatgcaa gcctacgtcg gctcgattct cttcctcacc acactggagg cgatgatcta
+     4501 gcccgtcttt caccccgtac ctttatactc ggccgcgtat ttctccaccg ggagctctgc
+     4561 ctaccaaagc gtcgtacgcc caggaagccg tttcctttat cctccctcat gtctcaacgc
+     4621 gcgagcatcg gagagtacgc gaaatcgact gtctggccaa cactggacag acgcgcgaga
+     4681 cactgataaa cccccatttt cgtggggtta gtaaatcggt ggcttcaaac ggttcgatcg
+     4741 ctcgcacgag cattagtcag gagtatgatt gcgcatcatc tctactccgt actaggttct
+     4801 gtagctcagg atctccgggg ggatcaagct tttatgtccc gcgggattag aagatatcca
+     4861 tccatatgtt tactttgatg cgggtccgag ctctctatga tgctgctttg acaaaatgtg
+     4921 gaaagcctca gcgaccgctc tggggtcaaa gctctacgac acgttgatgc taaacaagtt
+     4981 ggactactaa gcaaatgaag cggaagagat actgagcgct ct
+//
--- /dev/null	Thu Jan 01 00:00:00 1970 +0000
+++ b/test-data/init/example_assembly_plan_simulation/construct_3/provided_parts_records/receptor.gb	Fri May 16 11:32:06 2025 +0000
@@ -0,0 +1,75 @@
+LOCUS       Exported                3022 bp    DNA     circular UNK 01-JAN-1980
+DEFINITION  natural circular DNA.
+ACCESSION   receptor
+VERSION     receptor
+KEYWORDS    .
+SOURCE      natural DNA sequence
+  ORGANISM  unspecified
+            .
+REFERENCE   1  (bases 1 to 3022)
+  AUTHORS   .
+  TITLE     Direct Submission
+  JOURNAL   Exported Thursday, Oct 17, 2019 from SnapGene Viewer 4.3.11
+            https://www.snapgene.com
+FEATURES             Location/Qualifiers
+     source          1..3022
+                     /organism="unspecified"
+                     /mol_type="genomic DNA"
+     CDS             523..1222
+                     /label="KanR"
+     misc_feature    2023..2522
+                     /label="RepO_2"
+                     /label="nonstandard type: rep._origin"
+ORIGIN
+        1 attgagagac gcgtctcagg cactttcgct atatggcgac gtgcgaaaaa cgcgatttgg
+       61 ccgaaatctc aaataataat gcaatgtgtt ggctaagctc gggcaaactc aggatgtgac
+      121 ctagtaccct ctgccccgtg agtacccata cccaatcaag ccagcccaat tcgcgatagg
+      181 tacagataag ccttactcgt cccgatcctt gactaaaaca ctcatcctcg atagtacgtg
+      241 ccttgtagag tccgacggcc ataggtaaac gaccagttag tgtcgtaggg tcctccactt
+      301 tagctacgat tgcaactccc ttaccttcgt gccggcgcgc tcctcttgct accatcacgc
+      361 ttcaaatcgg gtggaagacc aactgatgaa tgagggtgca gaccccagtg gagcataata
+      421 cgatgcgccc acgatactct agagccacgc gtcgacgttc gtaagatgtc ccgggcccgt
+      481 gggtggccac atcggccgcc catccttgtg tcttccgata agtactccct ttcaaggact
+      541 ctccgatacc ggcttagaac acgaacggac aacgctttca gcgctgagaa atgacggctg
+      601 cttcaaccag aacgatacag ccttctttgc tagatagcct ctagtgtcag ccaccaagtc
+      661 cgccacctaa tccttcgccg agggtcaaag cttctgacca tccaattgtt aggcactctt
+      721 ggaaccttgc aagtacctga tcatgcagaa aatggacttg cccggagcat attcattata
+      781 agtaccattc acggcaggtt atagtatgcg ttgacgcggg gtgatacggt aatgcaagta
+      841 accatcgggc cgcggtatgc acatagaagg gtgtttgact tggtttctta cagtgcaact
+      901 gcatatgtgg accgccattc caagtgaaag gatacgaagg gaggtttcgg actgctatcc
+      961 agagcatgga aagccttcaa ggtggtgcgc actggaatag tgactcgggg attgtatgtc
+     1021 gagccgcgtc cagtctttcc tatacttatg cgagcaaata gaccgagtgg aacttgattg
+     1081 catcagccga atcacgatga aaactcagct tacaattcgt aagcacttca aatatatgcc
+     1141 cggaaaatcg ccgtccagtg acttgtaata gctccagggt cagtagcgct gccctggccg
+     1201 aaccaggtga cggttacgtg gacctcacag tatcaatgtt gcagtgcgcc accagattaa
+     1261 gctggccgtg tcatggtgaa caaccgtgat aaaagaacgg gagtatgaga gtgccaccca
+     1321 agagtggtac tccaggattc ggaaagggga gggggctttt cctgcttaac aaccttcctc
+     1381 ggcacggtct aagggtctca ctcgtcctaa actctaccat catgcagcta ggcgaaagta
+     1441 taactttagg gtctctcagg atgagctatc tgtaccacgg tgatgagata agtagggggt
+     1501 gcgctagggt cgttcgtgtt ttcatcgtct atagtaccta tttctcgtct tccattagcg
+     1561 catacggcca tctcgcggcg gctacgtcag ccagcgtcaa ccccaagtca ctaatttccg
+     1621 ttattatagg tgtagctcat aacttcttct gccgaccaag ccaaaagctt tgcggcagct
+     1681 gcaaggccac gttaggctct cggacggcag atatttatta ataacaccac tgggttccag
+     1741 ctcttaacgc acttcccttc actggatcac ctgtacgccc ataagctaag cctgaagcca
+     1801 cggcctcaat cgtggacatt actcttagca aatccacatt accatgtcac caatccccga
+     1861 accccgcgcc gacctaaggc ggggtacctc gtgcacggca gcatcgaggg aaatatatta
+     1921 caaaagacgc ggcgatccaa cggttgataa aaacagttcc gtggaaggcg gacgtgtgct
+     1981 tagcgcatgc ttctcaccga gtgacagcac cgattccatc tcgctagcac gccgatgagc
+     2041 ctcgctgtgg gactatggtc cagcctatgc ttaactaggc agaacagaga gtatggtggt
+     2101 cctcggtaag gtcgatttgg tggcactcgc aagatacgcg ggttattagt agagcgcagt
+     2161 cagggcccat cgccagcatt tgcatgctcg ccgtacgcta tccttgtact acggttcctc
+     2221 agtggctata aaggaatgtc acaactccat tagccccttt tgttcagcgc ttagtcatgg
+     2281 tgggactgac tcaccgagac tacatacgga ttgtgcccgc agagacctgc ctttcatgct
+     2341 ggggttttgt aagcagctcc acggggtagt gtcaccatgc cttcgaccta tgcttatgaa
+     2401 acccgaggta atgcggcagg atcccgtgga tcctacgctt agcctgttta agccatcgtt
+     2461 ctcctcggcc cccagccagc gcgtattccg cgcattcctc cgagtgcgta tcgcgcaaac
+     2521 cacaagatac ctctcaacga ctagcggtga accaccaagc ttgacatacg tgccccttcg
+     2581 gaaacgttat tagtggtcct gagtggtacg tcccgagtat acggggcagc gatagtaacg
+     2641 ctacaaatag ctaggcgagg ttgcgatacc tgaatgaata tccaacagtg gcaacgaggc
+     2701 gcttagaaag ggaaactaca taccagttca atccgggatg acttcaaaag ggtatgtttg
+     2761 ttttgaagcg aagctttggt tgtcattcag ttcctagagt ttacggcgct gatatggctc
+     2821 taggagtcca gtgaattcgt cagcataagc cccacatcgt aggaaattgc ccggtcgtcg
+     2881 gtctagcaaa tgctcggtaa actgggagtg tactaacacc atgtcgtggt aacccggtgg
+     2941 accggctact agagacatat ttattcatgc tcagttgaac ctgtttcgag ggggccgagt
+     3001 taacataaag tgattagtca ca
+//
--- /dev/null	Thu Jan 01 00:00:00 1970 +0000
+++ b/test-data/init/example_assembly_plan_simulation/example_assembly_plan_errors.csv	Fri May 16 11:32:06 2025 +0000
@@ -0,0 +1,7 @@
+assembly_name;message;suggestion;data;used_in
+construct_1;Wrong number of constructs;expected_: 1,found: 0;
+construct_1;Some parts are unused;unused_parts: partA & partB & partC & receptor;
+construct_2;Wrong number of constructs;expected_: 1,found: 0;
+construct_2;Some parts are unused;unused_parts: partA2 & partB2 & partC & receptor;
+construct_3;Wrong number of constructs;expected_: 1,found: 0;
+construct_3;Some parts are unused;unused_parts: partA & partA2 & partB & partC & receptor;
\ No newline at end of file
--- /dev/null	Thu Jan 01 00:00:00 1970 +0000
+++ b/test-data/init/example_assembly_plan_simulation/example_assembly_plan_simulation_stats.csv	Fri May 16 11:32:06 2025 +0000
@@ -0,0 +1,3 @@
+cancelled_assemblies: 0
+errored_assemblies: 3
+valid_assemblies: 0
\ No newline at end of file
--- /dev/null	Thu Jan 01 00:00:00 1970 +0000
+++ b/test-data/init/example_assembly_plan_simulation/example_assembly_plan_summary.csv	Fri May 16 11:32:06 2025 +0000
@@ -0,0 +1,1 @@
+assembly_name,construct_id,assembly_level,construct_size,number_of_parts,parts
Binary file test-data/init/gibson_assembly_simulation/Report.pdf has changed
--- /dev/null	Thu Jan 01 00:00:00 1970 +0000
+++ b/test-data/init/gibson_assembly_simulation/all_construct_records/construct_1.gb	Fri May 16 11:32:06 2025 +0000
@@ -0,0 +1,191 @@
+LOCUS       construct_1             8000 bp    DNA     circular UNK 01-JAN-1980
+DEFINITION  .
+ACCESSION   construct_1
+VERSION     construct_1
+KEYWORDS    .
+SOURCE      .
+  ORGANISM  .
+            .
+FEATURES             Location/Qualifiers
+     homology        1781..1800
+                     /label="homology"
+                     /color="#f7e8f7"
+                     /ApEinfo_fwdcolor="#f7e8f7"
+     misc_feature    1781..3581
+                     /source="Frag_3"
+                     /indicates_part=True
+                     /note="From Frag_3"
+                     /color="white"
+                     /ApEinfo_fwdcolor="white"
+     homology        3582..3599
+                     /label="homology"
+                     /color="#f7e8f7"
+                     /ApEinfo_fwdcolor="#f7e8f7"
+     misc_feature    3582..4781
+                     /source="Frag_4"
+                     /indicates_part=True
+                     /note="From Frag_4"
+                     /color="white"
+                     /ApEinfo_fwdcolor="white"
+     homology        4782..4799
+                     /label="homology"
+                     /color="#f7e8f7"
+                     /ApEinfo_fwdcolor="#f7e8f7"
+     misc_feature    4782..6190
+                     /source="Frag_5"
+                     /indicates_part=True
+                     /note="From Frag_5"
+                     /color="white"
+                     /ApEinfo_fwdcolor="white"
+     misc_feature    6191..8000
+                     /source="Frag_1"
+                     /indicates_part=True
+                     /note="From Frag_1"
+                     /color="white"
+                     /ApEinfo_fwdcolor="white"
+     homology        6191..6209
+                     /label="homology"
+                     /color="#f7e8f7"
+                     /ApEinfo_fwdcolor="#f7e8f7"
+     misc_feature    8021..9800
+                     /source="Frag_2"
+                     /indicates_part=True
+                     /note="From Frag_2"
+                     /color="white"
+                     /ApEinfo_fwdcolor="white"
+ORIGIN
+        1 cccagatcgc agctcccttg acagtgtcag ttgaatcccc attctaggtt tcctgataaa
+       61 actaagtacg gggacgcatc agtcgaaagc aatcacagat aatagatatc ttgagcagaa
+      121 agacgtcttc acgaatcagg agcgagtgtc ccctttgaaa gtgcgggcaa caataggtgt
+      181 gaggtttcac ggttgcttga tcagtagctg ttcactctct cgcaggccta catagtgagg
+      241 tggtgagatt gttcaggtct gtctcctgcg cggttgtcga gccccgtcgg gcacgctaac
+      301 aaggacagga attcgggtcg tcaaataaca atttacgtca tcgcatccct caagggtaag
+      361 gcgtgatctc catctcggtt cccaattggt cattgtgata gccacactgc agttaccgaa
+      421 ggcgatttta tactaccctg ataagtgctc gcagcccctc ctccctaata atgtaacgac
+      481 gagcattaac ccaggagtat ttctcacgtt gctcgtgccc agccaaggcg atcaacgcag
+      541 accggatagc gttagctagc ccacgggtaa aagcgattgt tgtactcttt catatgaata
+      601 cagcactcgc gaatgcaagc ctacgtcggc tcgattctct tcctcaccac actggaggcg
+      661 atgatctagc ccgtctttca ccccgtacct ttatactcgg ccgcgtattt ctccaccggg
+      721 agctctgcct accaaagcgt cgtacgccca ggaagccgtt tcctttatcc tccctcatgt
+      781 ctcaacgcgc gagcatcgga gagtacgcga aatcgactgt ctggccaaca ctggacagac
+      841 gcgcgagacg ctgataaacc cccattttcg tggggttagt aaatcggtgg cttcaaacgg
+      901 ttcgatcgct cgcacgagca ttagtcagga gtatgattgc gcatcatctc tactccgtac
+      961 taggttctgt agctcaggat ctccgggggg atcaagcttt tatgtcccgc gggattagaa
+     1021 gatatccatc catatgttta ctttgatgcg ggtccgagct ctctatgatg ctgctttgac
+     1081 aaaatgtgga aagcctcagc gaccgctctg gggtcaaagc tctacgacac gttgatgcta
+     1141 aacaagttgg actactaagc aaatgaagcg gaagagatac tgagcgctct ctctatgact
+     1201 ttcgctatat ggcgacgtgc gaaaaacgcg atttggccga aatctcaaat aataatgcaa
+     1261 tgtgttggct aagctcgggc aaactcagga tgtgacctag taccctctgc cccgtgagta
+     1321 cccataccca atcaagccag cccaattcgc gataggtaca gataagcctt actcgtcccg
+     1381 atccttgact aaaacactca tcctcgatag tacgtgcctt gtagagtccg acggccatag
+     1441 gtaaacgacc agttagtgtc gtagggtcct ccactttagc tacgattgca actcccttac
+     1501 cttcgtgccg gcgcgctcct cttgctacca tcacgcttca aatcgggtgg aagaccaact
+     1561 gatgaatgag ggtgcagacc ccagtggagc ataatacgat gcgcccacga tactctagag
+     1621 ccacgcgtcg acgttcgtaa gatgtcccgg gcccgtgggt ggccacatcg gccgcccatc
+     1681 cttgtgtctt ccgataagta ctccctttca aggactctcc gataccggct tagaacacga
+     1741 acggacaacg ctttcagcgc tgagaaatga cggctgcttc aaccagaacg atacagcctt
+     1801 ctttgctaga tagcctctag tgtcagccac caagtccgcc acctaatcct tcgccgaggg
+     1861 tcaaagcttc tgaccatcca attgttaggc actcttggaa ccttgcaagt acctgatcat
+     1921 gcagaaaatg gacttgcccg gagcatattc attataagta ccattcacgg caggttatag
+     1981 tatgcgttga cgcggggtga tacggtaatg caagtaacca tcgggccgcg gtatgcacat
+     2041 agaagggtgt ttgacttggt ttcttacagt gcaactgcat atgtggaccg ccattccaag
+     2101 tgaaaggata cgaagggagg tttcggactg ctatccagag catggaaagc cttcaaggtg
+     2161 gtgcgcactg gaatagtgac tcggggattg tatgtcgagc cgcgtccagt ctttcctata
+     2221 cttatgcgag caaatagacc gagtggaact tgattgcatc agccgaatca cgatgaaaac
+     2281 tcagcttaca attcgtaagc acttcaaata tatgcccgga aaatcgccgt ccagtgactt
+     2341 gtaatagctc cagggtcagt agcgctgccc tggccgaacc aggtgacggt tacgtggacc
+     2401 tcacagtatc aatgttgcag tgcgccacca gattaagctg gccgtgtcat ggtgaacaac
+     2461 cgtgataaaa gaacgggagt atgagagtgc cacccaagag tggtactcca ggattcggaa
+     2521 aggggagggg gcttttcctg cttaacaacc ttcctcggca cggtctaagc gtctcactcg
+     2581 tcctaaactc taccatcatg cagctaggcg aaagtataac tttagggtct atcaggatga
+     2641 gctatctgta ccacggtgat gagataagta gggggtgcgc tagggtcgtt cgtgttttca
+     2701 tcgtctatag tacctatttc tcgtcttcca ttagcgcata cggccatctc gcggcggcta
+     2761 cgtcagccag cgtcaacccc aagtcactaa tttccgttat tataggtgta gctcataact
+     2821 tcttctgccg accaagccaa aagctttgcg gcagctgcaa ggccacgtta ggctctcgga
+     2881 cggcagatat ttattaataa caccactggg ttccagctct taacgcactt cccttcactg
+     2941 gatcacctgt acgcccataa gctaagcctg aagccacggc ctcaatcgtg gacattactc
+     3001 ttagcaaatc cacattacca tgtcaccaat ccccgaaccc cgcgccgacc taaggcgggg
+     3061 tacctcgtgc acggcagcat cgagggaaat atattacaaa agacgcggcg atccaacggt
+     3121 tgataaaaac agttccgtgg aaggcggacg tgtgcttagc gcatgcttct caccgagtga
+     3181 cagcaccgat tccatctcgc tagcacgccg atgagcctcg ctgtgggact atggtccagc
+     3241 ctatgcttaa ctaggcagaa cagagagtat ggtggtcctc ggtaaggtcg atttggtggc
+     3301 actcgcaaga tacgcgggtt attagtagag cgcagtcagg gcccatcgcc agcatttgca
+     3361 tgctcgccgt acgctatcct tgtactacgg ttcctcagtg gctataaagg aatgtcacaa
+     3421 ctccattagc cccttttgtt cagcgcttag tcatggtggg actgactcac cgagactaca
+     3481 tacggattgt gcccgcagag acatgccttt catgctgggg ttttgtaagc agctccacgg
+     3541 ggtagtgtca ccatgccttc gacctatgct tatgaaaccc gaggtaatgc ggcaggatcc
+     3601 cgtggatcct acgcttagcc tgtttaagcc atcgttctcc tcggccccca gccagcgcgt
+     3661 attccgcgca ttcctccgag tgcgtatcgc gcaaaccaca agatacctct caacgactag
+     3721 cggtgaacca ccaagcttga catacgtgcc ccttcggaaa cgttattagt ggtcctgagt
+     3781 ggtacgtccc gagtatacgg ggcagcgata gtaacgctac aaatagctag gcgaggttgc
+     3841 gatacctgaa tgaatatcca acagtggcaa cgagacgctt agaaagggaa actacatacc
+     3901 agttcaatcc gggatgactt caaaagggta tgtttgtttt gaagcgaagc tttggttgtc
+     3961 attcagttcc tagagtttac ggcgctgata tggctctagg agtccagtga attcgtcagc
+     4021 ataagcccca catcgtagga aattgcccgg tcgtcggtct agcaaatgct cggtaaactg
+     4081 ggagtgtact aacaccatgt cgtggtaacc cggtggaccg gctactagag acatatttat
+     4141 tcatgctcag ttgaacctgt ttcgaggggg ccgagttaac ataaagtgat tagtcacagc
+     4201 gcattaagat agaacaggga tatagctcgt tgcatccata aattgcccac cgtagggaga
+     4261 acgccgttgg aaaatgagag ttaggcgatg agcggttgtc gcccgcacag acaaaggatg
+     4321 cctttataaa tagtagcggc cttgtctgca ccagacgttt gtgggtcgac gtgctattct
+     4381 agccaaaagc aaaatgtatc atactacagg caataggccc tatgctgacc aaacttgggg
+     4441 acccttgcgc cttctctctt acgcataaca tgcataggta cctctactca tcaggcaggg
+     4501 cggcgtgagg tcactatggc tcaagatgtg tacgactaaa gaaaggttta tgctccttcc
+     4561 ccaaggacgc atttgggact gctacttgcc cctagcgaat tcactaggat ttttgtagaa
+     4621 ccatgagcgc cctatccgat agcacagaga caatgctaca agcaactgtg catgcgctcg
+     4681 atcgccgtgc attaatacgt attatagcgt atcgtgtacg ctaatatctt agtgcaccgc
+     4741 acgctggttg gatacaattc cgtgaaataa ttcctgctta cacaggggct ttctggcgca
+     4801 tggctgtgtc tggatgtttg tgataagagg ctccatgaac ccggcgggaa atgaggggaa
+     4861 accccgggga gcaacgacac taagcctggc agttgttcag ataggacgct tttgtcagtg
+     4921 ggcggttttg catccactaa ctatcataaa cgacacaacg tcgaatgatc atcggcggtt
+     4981 tgcatgtaga gacagctcct gcaacaccat accggctcgt ggaattacgc tgtgcgccgg
+     5041 ccctcattcg attgtgtcca gcgtcggcgc gaatgatgat tgagatgtgc ttcggctcag
+     5101 agcgtgcaca ggtagttctc cccccttacc tagctgatcc agcaattcca cgctggcccg
+     5161 cgcgtccttg ggtaacactg gatctgtacc caaatacacc gtcgtgattg ttaactaccg
+     5221 tatggcggtt acgatcgagt gacactatta ttagaccgct actccaagtc ccaacttttc
+     5281 atcgccatac agaagagaac gagaaagtcg aagagttata gcgtgtacac ttctgattag
+     5341 ctaacgaatc gatgcgtaca gcatactcga gcaactttat gggtcgtctg tctccttgta
+     5401 ccccgcttga cgaggatgtg tttgtaggcg gcttggatat cggcagtgta tccgcatggt
+     5461 caaacacttt agcccgaccg gtgctcaagg tcgaaatcct aatatagatt gggataggac
+     5521 ccgtccatta ctaggcgaca ttcgcagtca cgagcccgca cggggtgcct caacacggtg
+     5581 acactcaatt cgccggcact gagtacgacg atcgtgattg ccataccgtc atgttttgtg
+     5641 ttacccctga taagaagcgc agatatggca cgggggcaga gggcggagta gacccatgca
+     5701 aaactctagc ctctgggcag catgatcgac gtagaacgcc gttgtgactc actagtttca
+     5761 gttatgatgt tcagccaaga atcctccatt ttgacgtgaa ccttctccct ttacaccttg
+     5821 aagctgcaat attaagtcga ccctttaagt tgccttgtct tggtctagag cccgcagctc
+     5881 accgataaaa tgagcagtca attttagcgg cggttgtcca ggttacatgc actttgggct
+     5941 ggaaccgcgt tacgtttgga gtacttagaa gtgtcgtagg cataggagag ccgaaacttg
+     6001 atattgggtc tagttagtgc tctaccccgc ttcggatccg taatagtgat gttgcatgag
+     6061 acgcttgcct caaggcgaca tacggtggcg gttgctggaa atgacgcccc accccgtgat
+     6121 aatttgggga cgagccgcac gataacttct gccagcgacc gcccctccca cgtccgatgg
+     6181 tgattccgaa ctccacctgc gtctatcgta cagtgctaaa atggcagcag atagtgaaac
+     6241 ttccgctaag ctagcccctc agggtacact gcaccgaggc gtgctgtcaa tacttgatta
+     6301 agtcgggttg tcggggacct gccgtcacgc ttccgagtgt atatccggat ttagttgacg
+     6361 tcatacagag gcactaagaa gaataaacgc ttacctccag caatcgtgta gtgtcaggtg
+     6421 tacgttctcc cttgcgccgt tcggcaagcg tccggtgtcg ggctgcaagg aataaatctt
+     6481 tatggaccag aggggcttgt ttcctcatat gggtgcgtgc acttatacga ttcaaaggtg
+     6541 gatatggccg cataacacgt agccaggcta tagtcccgcg gcctaattcc ttcgagtgcg
+     6601 ggtgcctgtt tttgtttttc ctttacgaca cgaaccgctc taacctgctc tatttcgcca
+     6661 cgttccagtg aacctcttag cctaccgccc acgtacggtg ggacgcgtcg agcagttaag
+     6721 gtactgtgga gaaatcgttc aatattagaa aacaggcggt gtacgaatta ctgtgtcccg
+     6781 gtgttgcccg tttaacggct gccgtggtca taccgtgagg caccacgagg ggatgctacg
+     6841 caacatgcga ggtgtaatca gcagggaaga tcccggggat cgaaagcggt ccgcgatttg
+     6901 cgaccgatat gcataaggtg tcatttatat tacacctacg acactggtac cggctcacag
+     6961 ccaaatgcac agtctcaaga tagaattcgc aaaaattagg cttatcgggc gcttactctt
+     7021 tgttacactt ctggtctgtg agtgacgccc tgtgtcccat cactgcatgt gaggatgcgt
+     7081 gtactgcacc tgtgaattac agacgtttcc ctaccagggc gctacgttat aatgttcggt
+     7141 tgcaaccctc tatagggtga tctcgacata ccactatggt ttgcgcgtct cgggtgcttt
+     7201 tggcgagggc caggtacggc ggtgagacag cgtattttgc gaatagggta ttcggacgca
+     7261 cggtgtatag ctcttggaaa acgactcttc gacgggcgtg tagaagtagc caagcagttc
+     7321 ggttgttatc actaaatgcg gaccatgtgc agccgtttag gagaggagtc tgcaatggat
+     7381 cagctggtca gattgtacca ctcggttgag cctaaggcac ttcaggtgct cggattgtaa
+     7441 tgaaccctca ggttacgccg ttgcgctgag atcccacaag ccataagcaa tgagaatcga
+     7501 gcagctatcg aattacgcag cacttgctga tgaactgggt gcacctaaag cgcccgataa
+     7561 aacggaggga gtgaggtaac tactacattg cgagtagtgc gaggggcctc cgagactaca
+     7621 ttagagcagc catgccgaat acgacaaaat ctatagcctt gcgaacgtag gggactgatt
+     7681 tatggacaac aggaccgaaa caagttggag ccacaacgga gctatggacg ttttcactat
+     7741 tgatgggtgg cttgcgtccg catcccaggt ttctctggtt aattttcatg acgattcttt
+     7801 gtggtacgat ccaggcataa gatagggcac ctaacccgat actgtgaact tatatgacgg
+     7861 ctgaacatgc cctaatagtc tgccaaaagg gaaacctata acggctctaa acgggccccg
+     7921 ggtacgtaac agcaatgttc ctgtccacca aggcgttttt agtaaccgcc gatcgatctc
+     7981 gatcgaattc cgttttacgc
+//
--- /dev/null	Thu Jan 01 00:00:00 1970 +0000
+++ b/test-data/init/gibson_assembly_simulation/all_construct_records/construct_2.gb	Fri May 16 11:32:06 2025 +0000
@@ -0,0 +1,191 @@
+LOCUS       construct_2             8000 bp    DNA     circular UNK 01-JAN-1980
+DEFINITION  .
+ACCESSION   construct_2
+VERSION     construct_2
+KEYWORDS    .
+SOURCE      .
+  ORGANISM  .
+            .
+FEATURES             Location/Qualifiers
+     homology        1781..1800
+                     /label="homology"
+                     /color="#f7e8f7"
+                     /ApEinfo_fwdcolor="#f7e8f7"
+     misc_feature    1781..3581
+                     /source="Frag_3"
+                     /indicates_part=True
+                     /note="From Frag_3"
+                     /color="white"
+                     /ApEinfo_fwdcolor="white"
+     homology        3582..3599
+                     /label="homology"
+                     /color="#f7e8f7"
+                     /ApEinfo_fwdcolor="#f7e8f7"
+     misc_feature    3582..4781
+                     /source="Frag_4b"
+                     /indicates_part=True
+                     /note="From Frag_4b"
+                     /color="white"
+                     /ApEinfo_fwdcolor="white"
+     homology        4782..4799
+                     /label="homology"
+                     /color="#f7e8f7"
+                     /ApEinfo_fwdcolor="#f7e8f7"
+     misc_feature    4782..6190
+                     /source="Frag_5"
+                     /indicates_part=True
+                     /note="From Frag_5"
+                     /color="white"
+                     /ApEinfo_fwdcolor="white"
+     misc_feature    6191..8000
+                     /source="Frag_1"
+                     /indicates_part=True
+                     /note="From Frag_1"
+                     /color="white"
+                     /ApEinfo_fwdcolor="white"
+     homology        6191..6209
+                     /label="homology"
+                     /color="#f7e8f7"
+                     /ApEinfo_fwdcolor="#f7e8f7"
+     misc_feature    8021..9800
+                     /source="Frag_2"
+                     /indicates_part=True
+                     /note="From Frag_2"
+                     /color="white"
+                     /ApEinfo_fwdcolor="white"
+ORIGIN
+        1 cccagatcgc agctcccttg acagtgtcag ttgaatcccc attctaggtt tcctgataaa
+       61 actaagtacg gggacgcatc agtcgaaagc aatcacagat aatagatatc ttgagcagaa
+      121 agacgtcttc acgaatcagg agcgagtgtc ccctttgaaa gtgcgggcaa caataggtgt
+      181 gaggtttcac ggttgcttga tcagtagctg ttcactctct cgcaggccta catagtgagg
+      241 tggtgagatt gttcaggtct gtctcctgcg cggttgtcga gccccgtcgg gcacgctaac
+      301 aaggacagga attcgggtcg tcaaataaca atttacgtca tcgcatccct caagggtaag
+      361 gcgtgatctc catctcggtt cccaattggt cattgtgata gccacactgc agttaccgaa
+      421 ggcgatttta tactaccctg ataagtgctc gcagcccctc ctccctaata atgtaacgac
+      481 gagcattaac ccaggagtat ttctcacgtt gctcgtgccc agccaaggcg atcaacgcag
+      541 accggatagc gttagctagc ccacgggtaa aagcgattgt tgtactcttt catatgaata
+      601 cagcactcgc gaatgcaagc ctacgtcggc tcgattctct tcctcaccac actggaggcg
+      661 atgatctagc ccgtctttca ccccgtacct ttatactcgg ccgcgtattt ctccaccggg
+      721 agctctgcct accaaagcgt cgtacgccca ggaagccgtt tcctttatcc tccctcatgt
+      781 ctcaacgcgc gagcatcgga gagtacgcga aatcgactgt ctggccaaca ctggacagac
+      841 gcgcgagacg ctgataaacc cccattttcg tggggttagt aaatcggtgg cttcaaacgg
+      901 ttcgatcgct cgcacgagca ttagtcagga gtatgattgc gcatcatctc tactccgtac
+      961 taggttctgt agctcaggat ctccgggggg atcaagcttt tatgtcccgc gggattagaa
+     1021 gatatccatc catatgttta ctttgatgcg ggtccgagct ctctatgatg ctgctttgac
+     1081 aaaatgtgga aagcctcagc gaccgctctg gggtcaaagc tctacgacac gttgatgcta
+     1141 aacaagttgg actactaagc aaatgaagcg gaagagatac tgagcgctct ctctatgact
+     1201 ttcgctatat ggcgacgtgc gaaaaacgcg atttggccga aatctcaaat aataatgcaa
+     1261 tgtgttggct aagctcgggc aaactcagga tgtgacctag taccctctgc cccgtgagta
+     1321 cccataccca atcaagccag cccaattcgc gataggtaca gataagcctt actcgtcccg
+     1381 atccttgact aaaacactca tcctcgatag tacgtgcctt gtagagtccg acggccatag
+     1441 gtaaacgacc agttagtgtc gtagggtcct ccactttagc tacgattgca actcccttac
+     1501 cttcgtgccg gcgcgctcct cttgctacca tcacgcttca aatcgggtgg aagaccaact
+     1561 gatgaatgag ggtgcagacc ccagtggagc ataatacgat gcgcccacga tactctagag
+     1621 ccacgcgtcg acgttcgtaa gatgtcccgg gcccgtgggt ggccacatcg gccgcccatc
+     1681 cttgtgtctt ccgataagta ctccctttca aggactctcc gataccggct tagaacacga
+     1741 acggacaacg ctttcagcgc tgagaaatga cggctgcttc aaccagaacg atacagcctt
+     1801 ctttgctaga tagcctctag tgtcagccac caagtccgcc acctaatcct tcgccgaggg
+     1861 tcaaagcttc tgaccatcca attgttaggc actcttggaa ccttgcaagt acctgatcat
+     1921 gcagaaaatg gacttgcccg gagcatattc attataagta ccattcacgg caggttatag
+     1981 tatgcgttga cgcggggtga tacggtaatg caagtaacca tcgggccgcg gtatgcacat
+     2041 agaagggtgt ttgacttggt ttcttacagt gcaactgcat atgtggaccg ccattccaag
+     2101 tgaaaggata cgaagggagg tttcggactg ctatccagag catggaaagc cttcaaggtg
+     2161 gtgcgcactg gaatagtgac tcggggattg tatgtcgagc cgcgtccagt ctttcctata
+     2221 cttatgcgag caaatagacc gagtggaact tgattgcatc agccgaatca cgatgaaaac
+     2281 tcagcttaca attcgtaagc acttcaaata tatgcccgga aaatcgccgt ccagtgactt
+     2341 gtaatagctc cagggtcagt agcgctgccc tggccgaacc aggtgacggt tacgtggacc
+     2401 tcacagtatc aatgttgcag tgcgccacca gattaagctg gccgtgtcat ggtgaacaac
+     2461 cgtgataaaa gaacgggagt atgagagtgc cacccaagag tggtactcca ggattcggaa
+     2521 aggggagggg gcttttcctg cttaacaacc ttcctcggca cggtctaagc gtctcactcg
+     2581 tcctaaactc taccatcatg cagctaggcg aaagtataac tttagggtct atcaggatga
+     2641 gctatctgta ccacggtgat gagataagta gggggtgcgc tagggtcgtt cgtgttttca
+     2701 tcgtctatag tacctatttc tcgtcttcca ttagcgcata cggccatctc gcggcggcta
+     2761 cgtcagccag cgtcaacccc aagtcactaa tttccgttat tataggtgta gctcataact
+     2821 tcttctgccg accaagccaa aagctttgcg gcagctgcaa ggccacgtta ggctctcgga
+     2881 cggcagatat ttattaataa caccactggg ttccagctct taacgcactt cccttcactg
+     2941 gatcacctgt acgcccataa gctaagcctg aagccacggc ctcaatcgtg gacattactc
+     3001 ttagcaaatc cacattacca tgtcaccaat ccccgaaccc cgcgccgacc taaggcgggg
+     3061 tacctcgtgc acggcagcat cgagggaaat atattacaaa agacgcggcg atccaacggt
+     3121 tgataaaaac agttccgtgg aaggcggacg tgtgcttagc gcatgcttct caccgagtga
+     3181 cagcaccgat tccatctcgc tagcacgccg atgagcctcg ctgtgggact atggtccagc
+     3241 ctatgcttaa ctaggcagaa cagagagtat ggtggtcctc ggtaaggtcg atttggtggc
+     3301 actcgcaaga tacgcgggtt attagtagag cgcagtcagg gcccatcgcc agcatttgca
+     3361 tgctcgccgt acgctatcct tgtactacgg ttcctcagtg gctataaagg aatgtcacaa
+     3421 ctccattagc cccttttgtt cagcgcttag tcatggtggg actgactcac cgagactaca
+     3481 tacggattgt gcccgcagag acatgccttt catgctgggg ttttgtaagc agctccacgg
+     3541 ggtagtgtca ccatgccttc gacctatgct tatgaaaccc gaggtaatgc ggcaggatcc
+     3601 cgtggatcct acgcttagcc tgttaccccc cccgttctcc tcggccccca gccagcgcgt
+     3661 attccgcgca ttcctccgag tgcgtatcgc gcaaaccaca agatacctct caacgactag
+     3721 cggtgaacca ccaagcttga catacgtgcc ccttcggaaa cgttattagt ggtcctgagt
+     3781 ggtacgtccc gagtatacgg ggcagcgata gtaacgctac aaatagctag accgacgaca
+     3841 aacacagcac tgaatatcca acagtggcaa cgagacgctt agaaagggaa actacatacc
+     3901 agttcaatcc gggatgactt caaaagggta tgtttgtttt gaagcgaagc tttggttgtc
+     3961 attcagttcc tagagtttac ggcgctgata tggctctagg agtccagtga attcgtcagc
+     4021 ataagcccca catcgtagga aattgcccgg tcgtcggtct agcaaatgct cggtaaactg
+     4081 ggagtgtact aacaccatgt cgtggtaacc cggtggaccg gctactagag acatatttat
+     4141 tcatgctcag ttgaacctgt ttcgaggggg ccgagttaac ataaagtgat tagtcacagc
+     4201 gcattaagat agaacaggga tatagctcgt tgcatccata aattgcccac cgtagggaga
+     4261 acgccgttgg aaaatgagag ttaggcgatg agcggttgtc gcccgcacag acaaaggatg
+     4321 cctttataaa tagtagcggc cttgtctgca ccagacgttt gtgggtcgac gtgctattct
+     4381 agccaaaagc aaaatgtatc atactacagg caataggccc tatgctgacc aaacttgggg
+     4441 acccttgcgc cttctctctt acgcataaca tgcataggta cctctactca tcaggcaggg
+     4501 cggcgtgagg tcactatggc tcaagatgtg tacgactaaa gaaaggttta tgctccttcc
+     4561 ccaaggacgc atttgggact gctacttgcc cctagcgaat tcactaggat ttttgtagaa
+     4621 ccatgagcgc cctatccgat agcacagaga caatgctaca agcaactgtg catgcgctcg
+     4681 atcgccgtgc attaatacgt attatagcgt atcgtgtacg ctaatatctt agtgcaccgc
+     4741 acgctggttg gatacaattc cgtgaaataa ttcctgctta cacaggggct ttctggcgca
+     4801 tggctgtgtc tggatgtttg tgataagagg ctccatgaac ccggcgggaa atgaggggaa
+     4861 accccgggga gcaacgacac taagcctggc agttgttcag ataggacgct tttgtcagtg
+     4921 ggcggttttg catccactaa ctatcataaa cgacacaacg tcgaatgatc atcggcggtt
+     4981 tgcatgtaga gacagctcct gcaacaccat accggctcgt ggaattacgc tgtgcgccgg
+     5041 ccctcattcg attgtgtcca gcgtcggcgc gaatgatgat tgagatgtgc ttcggctcag
+     5101 agcgtgcaca ggtagttctc cccccttacc tagctgatcc agcaattcca cgctggcccg
+     5161 cgcgtccttg ggtaacactg gatctgtacc caaatacacc gtcgtgattg ttaactaccg
+     5221 tatggcggtt acgatcgagt gacactatta ttagaccgct actccaagtc ccaacttttc
+     5281 atcgccatac agaagagaac gagaaagtcg aagagttata gcgtgtacac ttctgattag
+     5341 ctaacgaatc gatgcgtaca gcatactcga gcaactttat gggtcgtctg tctccttgta
+     5401 ccccgcttga cgaggatgtg tttgtaggcg gcttggatat cggcagtgta tccgcatggt
+     5461 caaacacttt agcccgaccg gtgctcaagg tcgaaatcct aatatagatt gggataggac
+     5521 ccgtccatta ctaggcgaca ttcgcagtca cgagcccgca cggggtgcct caacacggtg
+     5581 acactcaatt cgccggcact gagtacgacg atcgtgattg ccataccgtc atgttttgtg
+     5641 ttacccctga taagaagcgc agatatggca cgggggcaga gggcggagta gacccatgca
+     5701 aaactctagc ctctgggcag catgatcgac gtagaacgcc gttgtgactc actagtttca
+     5761 gttatgatgt tcagccaaga atcctccatt ttgacgtgaa ccttctccct ttacaccttg
+     5821 aagctgcaat attaagtcga ccctttaagt tgccttgtct tggtctagag cccgcagctc
+     5881 accgataaaa tgagcagtca attttagcgg cggttgtcca ggttacatgc actttgggct
+     5941 ggaaccgcgt tacgtttgga gtacttagaa gtgtcgtagg cataggagag ccgaaacttg
+     6001 atattgggtc tagttagtgc tctaccccgc ttcggatccg taatagtgat gttgcatgag
+     6061 acgcttgcct caaggcgaca tacggtggcg gttgctggaa atgacgcccc accccgtgat
+     6121 aatttgggga cgagccgcac gataacttct gccagcgacc gcccctccca cgtccgatgg
+     6181 tgattccgaa ctccacctgc gtctatcgta cagtgctaaa atggcagcag atagtgaaac
+     6241 ttccgctaag ctagcccctc agggtacact gcaccgaggc gtgctgtcaa tacttgatta
+     6301 agtcgggttg tcggggacct gccgtcacgc ttccgagtgt atatccggat ttagttgacg
+     6361 tcatacagag gcactaagaa gaataaacgc ttacctccag caatcgtgta gtgtcaggtg
+     6421 tacgttctcc cttgcgccgt tcggcaagcg tccggtgtcg ggctgcaagg aataaatctt
+     6481 tatggaccag aggggcttgt ttcctcatat gggtgcgtgc acttatacga ttcaaaggtg
+     6541 gatatggccg cataacacgt agccaggcta tagtcccgcg gcctaattcc ttcgagtgcg
+     6601 ggtgcctgtt tttgtttttc ctttacgaca cgaaccgctc taacctgctc tatttcgcca
+     6661 cgttccagtg aacctcttag cctaccgccc acgtacggtg ggacgcgtcg agcagttaag
+     6721 gtactgtgga gaaatcgttc aatattagaa aacaggcggt gtacgaatta ctgtgtcccg
+     6781 gtgttgcccg tttaacggct gccgtggtca taccgtgagg caccacgagg ggatgctacg
+     6841 caacatgcga ggtgtaatca gcagggaaga tcccggggat cgaaagcggt ccgcgatttg
+     6901 cgaccgatat gcataaggtg tcatttatat tacacctacg acactggtac cggctcacag
+     6961 ccaaatgcac agtctcaaga tagaattcgc aaaaattagg cttatcgggc gcttactctt
+     7021 tgttacactt ctggtctgtg agtgacgccc tgtgtcccat cactgcatgt gaggatgcgt
+     7081 gtactgcacc tgtgaattac agacgtttcc ctaccagggc gctacgttat aatgttcggt
+     7141 tgcaaccctc tatagggtga tctcgacata ccactatggt ttgcgcgtct cgggtgcttt
+     7201 tggcgagggc caggtacggc ggtgagacag cgtattttgc gaatagggta ttcggacgca
+     7261 cggtgtatag ctcttggaaa acgactcttc gacgggcgtg tagaagtagc caagcagttc
+     7321 ggttgttatc actaaatgcg gaccatgtgc agccgtttag gagaggagtc tgcaatggat
+     7381 cagctggtca gattgtacca ctcggttgag cctaaggcac ttcaggtgct cggattgtaa
+     7441 tgaaccctca ggttacgccg ttgcgctgag atcccacaag ccataagcaa tgagaatcga
+     7501 gcagctatcg aattacgcag cacttgctga tgaactgggt gcacctaaag cgcccgataa
+     7561 aacggaggga gtgaggtaac tactacattg cgagtagtgc gaggggcctc cgagactaca
+     7621 ttagagcagc catgccgaat acgacaaaat ctatagcctt gcgaacgtag gggactgatt
+     7681 tatggacaac aggaccgaaa caagttggag ccacaacgga gctatggacg ttttcactat
+     7741 tgatgggtgg cttgcgtccg catcccaggt ttctctggtt aattttcatg acgattcttt
+     7801 gtggtacgat ccaggcataa gatagggcac ctaacccgat actgtgaact tatatgacgg
+     7861 ctgaacatgc cctaatagtc tgccaaaagg gaaacctata acggctctaa acgggccccg
+     7921 ggtacgtaac agcaatgttc ctgtccacca aggcgttttt agtaaccgcc gatcgatctc
+     7981 gatcgaattc cgttttacgc
+//
--- /dev/null	Thu Jan 01 00:00:00 1970 +0000
+++ b/test-data/init/gibson_assembly_simulation/all_construct_records/construct_3.gb	Fri May 16 11:32:06 2025 +0000
@@ -0,0 +1,191 @@
+LOCUS       construct_3             8000 bp    DNA     circular UNK 01-JAN-1980
+DEFINITION  .
+ACCESSION   construct_3
+VERSION     construct_3
+KEYWORDS    .
+SOURCE      .
+  ORGANISM  .
+            .
+FEATURES             Location/Qualifiers
+     homology        1781..1800
+                     /label="homology"
+                     /color="#f7e8f7"
+                     /ApEinfo_fwdcolor="#f7e8f7"
+     misc_feature    1781..3581
+                     /source="Frag_3"
+                     /indicates_part=True
+                     /note="From Frag_3"
+                     /color="white"
+                     /ApEinfo_fwdcolor="white"
+     homology        3582..3599
+                     /label="homology"
+                     /color="#f7e8f7"
+                     /ApEinfo_fwdcolor="#f7e8f7"
+     misc_feature    3582..4781
+                     /source="Frag_4c"
+                     /indicates_part=True
+                     /note="From Frag_4c"
+                     /color="white"
+                     /ApEinfo_fwdcolor="white"
+     homology        4782..4799
+                     /label="homology"
+                     /color="#f7e8f7"
+                     /ApEinfo_fwdcolor="#f7e8f7"
+     misc_feature    4782..6190
+                     /source="Frag_5b"
+                     /indicates_part=True
+                     /note="From Frag_5b"
+                     /color="white"
+                     /ApEinfo_fwdcolor="white"
+     misc_feature    6191..8000
+                     /source="Frag_1"
+                     /indicates_part=True
+                     /note="From Frag_1"
+                     /color="white"
+                     /ApEinfo_fwdcolor="white"
+     homology        6191..6209
+                     /label="homology"
+                     /color="#f7e8f7"
+                     /ApEinfo_fwdcolor="#f7e8f7"
+     misc_feature    8021..9800
+                     /source="Frag_2"
+                     /indicates_part=True
+                     /note="From Frag_2"
+                     /color="white"
+                     /ApEinfo_fwdcolor="white"
+ORIGIN
+        1 cccagatcgc agctcccttg acagtgtcag ttgaatcccc attctaggtt tcctgataaa
+       61 actaagtacg gggacgcatc agtcgaaagc aatcacagat aatagatatc ttgagcagaa
+      121 agacgtcttc acgaatcagg agcgagtgtc ccctttgaaa gtgcgggcaa caataggtgt
+      181 gaggtttcac ggttgcttga tcagtagctg ttcactctct cgcaggccta catagtgagg
+      241 tggtgagatt gttcaggtct gtctcctgcg cggttgtcga gccccgtcgg gcacgctaac
+      301 aaggacagga attcgggtcg tcaaataaca atttacgtca tcgcatccct caagggtaag
+      361 gcgtgatctc catctcggtt cccaattggt cattgtgata gccacactgc agttaccgaa
+      421 ggcgatttta tactaccctg ataagtgctc gcagcccctc ctccctaata atgtaacgac
+      481 gagcattaac ccaggagtat ttctcacgtt gctcgtgccc agccaaggcg atcaacgcag
+      541 accggatagc gttagctagc ccacgggtaa aagcgattgt tgtactcttt catatgaata
+      601 cagcactcgc gaatgcaagc ctacgtcggc tcgattctct tcctcaccac actggaggcg
+      661 atgatctagc ccgtctttca ccccgtacct ttatactcgg ccgcgtattt ctccaccggg
+      721 agctctgcct accaaagcgt cgtacgccca ggaagccgtt tcctttatcc tccctcatgt
+      781 ctcaacgcgc gagcatcgga gagtacgcga aatcgactgt ctggccaaca ctggacagac
+      841 gcgcgagacg ctgataaacc cccattttcg tggggttagt aaatcggtgg cttcaaacgg
+      901 ttcgatcgct cgcacgagca ttagtcagga gtatgattgc gcatcatctc tactccgtac
+      961 taggttctgt agctcaggat ctccgggggg atcaagcttt tatgtcccgc gggattagaa
+     1021 gatatccatc catatgttta ctttgatgcg ggtccgagct ctctatgatg ctgctttgac
+     1081 aaaatgtgga aagcctcagc gaccgctctg gggtcaaagc tctacgacac gttgatgcta
+     1141 aacaagttgg actactaagc aaatgaagcg gaagagatac tgagcgctct ctctatgact
+     1201 ttcgctatat ggcgacgtgc gaaaaacgcg atttggccga aatctcaaat aataatgcaa
+     1261 tgtgttggct aagctcgggc aaactcagga tgtgacctag taccctctgc cccgtgagta
+     1321 cccataccca atcaagccag cccaattcgc gataggtaca gataagcctt actcgtcccg
+     1381 atccttgact aaaacactca tcctcgatag tacgtgcctt gtagagtccg acggccatag
+     1441 gtaaacgacc agttagtgtc gtagggtcct ccactttagc tacgattgca actcccttac
+     1501 cttcgtgccg gcgcgctcct cttgctacca tcacgcttca aatcgggtgg aagaccaact
+     1561 gatgaatgag ggtgcagacc ccagtggagc ataatacgat gcgcccacga tactctagag
+     1621 ccacgcgtcg acgttcgtaa gatgtcccgg gcccgtgggt ggccacatcg gccgcccatc
+     1681 cttgtgtctt ccgataagta ctccctttca aggactctcc gataccggct tagaacacga
+     1741 acggacaacg ctttcagcgc tgagaaatga cggctgcttc aaccagaacg atacagcctt
+     1801 ctttgctaga tagcctctag tgtcagccac caagtccgcc acctaatcct tcgccgaggg
+     1861 tcaaagcttc tgaccatcca attgttaggc actcttggaa ccttgcaagt acctgatcat
+     1921 gcagaaaatg gacttgcccg gagcatattc attataagta ccattcacgg caggttatag
+     1981 tatgcgttga cgcggggtga tacggtaatg caagtaacca tcgggccgcg gtatgcacat
+     2041 agaagggtgt ttgacttggt ttcttacagt gcaactgcat atgtggaccg ccattccaag
+     2101 tgaaaggata cgaagggagg tttcggactg ctatccagag catggaaagc cttcaaggtg
+     2161 gtgcgcactg gaatagtgac tcggggattg tatgtcgagc cgcgtccagt ctttcctata
+     2221 cttatgcgag caaatagacc gagtggaact tgattgcatc agccgaatca cgatgaaaac
+     2281 tcagcttaca attcgtaagc acttcaaata tatgcccgga aaatcgccgt ccagtgactt
+     2341 gtaatagctc cagggtcagt agcgctgccc tggccgaacc aggtgacggt tacgtggacc
+     2401 tcacagtatc aatgttgcag tgcgccacca gattaagctg gccgtgtcat ggtgaacaac
+     2461 cgtgataaaa gaacgggagt atgagagtgc cacccaagag tggtactcca ggattcggaa
+     2521 aggggagggg gcttttcctg cttaacaacc ttcctcggca cggtctaagc gtctcactcg
+     2581 tcctaaactc taccatcatg cagctaggcg aaagtataac tttagggtct atcaggatga
+     2641 gctatctgta ccacggtgat gagataagta gggggtgcgc tagggtcgtt cgtgttttca
+     2701 tcgtctatag tacctatttc tcgtcttcca ttagcgcata cggccatctc gcggcggcta
+     2761 cgtcagccag cgtcaacccc aagtcactaa tttccgttat tataggtgta gctcataact
+     2821 tcttctgccg accaagccaa aagctttgcg gcagctgcaa ggccacgtta ggctctcgga
+     2881 cggcagatat ttattaataa caccactggg ttccagctct taacgcactt cccttcactg
+     2941 gatcacctgt acgcccataa gctaagcctg aagccacggc ctcaatcgtg gacattactc
+     3001 ttagcaaatc cacattacca tgtcaccaat ccccgaaccc cgcgccgacc taaggcgggg
+     3061 tacctcgtgc acggcagcat cgagggaaat atattacaaa agacgcggcg atccaacggt
+     3121 tgataaaaac agttccgtgg aaggcggacg tgtgcttagc gcatgcttct caccgagtga
+     3181 cagcaccgat tccatctcgc tagcacgccg atgagcctcg ctgtgggact atggtccagc
+     3241 ctatgcttaa ctaggcagaa cagagagtat ggtggtcctc ggtaaggtcg atttggtggc
+     3301 actcgcaaga tacgcgggtt attagtagag cgcagtcagg gcccatcgcc agcatttgca
+     3361 tgctcgccgt acgctatcct tgtactacgg ttcctcagtg gctataaagg aatgtcacaa
+     3421 ctccattagc cccttttgtt cagcgcttag tcatggtggg actgactcac cgagactaca
+     3481 tacggattgt gcccgcagag acatgccttt catgctgggg ttttgtaagc agctccacgg
+     3541 ggtagtgtca ccatgccttc gacctatgct tatgaaaccc gaggtaatgc ggcaggatcc
+     3601 cgtggatcct acgcttagcc tgttaggggg ggggttctcc tcggccccca gccagcgcgt
+     3661 attccgcgca ttcctccgag tgcgtatcgc gcaaaccaca agatacctct caacgactag
+     3721 cggtgaacca ccaagcttga catacgtgcc ccttcggaaa cgttattagt ggtcctgagt
+     3781 ggtacgtccc gagtatacgg ggcagcgata gtaacgctac aaatagctag accgacgaca
+     3841 aacacagcac tgaatatcca acagtggcaa cgagacgctt agaaagggaa actacatacc
+     3901 agttcaatcc gggatgactt caaaagggta tgtttgtttt gaagcgaagc tttggttgtc
+     3961 attcagttcc tagagtttac ggcgctgata tggctctagg agtccagtga attcgtcagc
+     4021 ataagcccca catcgtagga aattgcccgg tcgtcggtct agcaaatgct cggtaaactg
+     4081 ggagtgtact aacaccatgt cgtggtaacc cggtggaccg gctactagag acatatttat
+     4141 tcatgctcag ttgaacctgt ttcgaggggg ccgagttaac ataaagtgat tagtcacagc
+     4201 gcattaagat agaacaggga tatagctcgt tgcatccata aattgcccac cgtagggaga
+     4261 acgccgttgg aaaatgagag ttaggcgatg agcggttgtc gcccgcacag acaaaggatg
+     4321 cctttataaa tagtagcggc cttgtctgca ccagacgttt gtgggtcgac gtgctattct
+     4381 agccaaaagc aaaatgtatc atactacagg caataggccc tatgctgacc aaacttgggg
+     4441 acccttgcgc cttctctctt acgcataaca tgcataggta cctctactca tcaggcaggg
+     4501 cggcgtgagg tcactatggc tcaagatgtg tacgactaaa gaaaggttta tgctccttcc
+     4561 ccaaggacgc atttgggact gctacttgcc cctagcgaat tcactaggat ttttgtagaa
+     4621 ccatgagcgc cctatccgat agcacagaga caatgctaca agcaactgtg catgcgctcg
+     4681 atcgccgtgc attaatacgt attatagcgt atcgtgtacg ctaatatctt agtgcaccgc
+     4741 acgctggttg gatacaattc cgtgaaataa ttcctgctta cacaggggct ttctggcgca
+     4801 tggctgtgtc tggaaaaaaa aaaaaaaaaa aaacatgaac ccggcgggaa atgaggggaa
+     4861 accccgggga gcaacgacac taagcctggc agttgttcag ataggacgct tttgtcagtg
+     4921 ggcggttttg catccactaa ctatcataaa cgacacaacg tcgaatgatc atcggcggtt
+     4981 tgcatgtaga gacagctcct gcaacaccat accggctcgt ggaattacgc tgtgcgccgg
+     5041 ccctcattcg attgtgtcca gcgtcggcgc gaatgatgat tgagatgtgc ttcggctcag
+     5101 agcgtgcaca ggtagttctc cccccttacc tagctgatcc agcaattcca cgctggcccg
+     5161 cgcgtccttg ggtaacactg gatctgtacc caaatacacc gtcgtgattg ttaactaccg
+     5221 tatggcggtt acgatcgagt gacactatta ttagaccgct actccaagtc ccaacttttc
+     5281 atcgccatac agaagagaac gagaaagtcg aagagttata gcgtgtacac ttctgattag
+     5341 ctaacgaatc gatgcgtaca gcatactcga gcaactttat gggtcgtctg tctccttgta
+     5401 ccccgcttga cgaggatgtg tttgtaggcg gcttggatat cggcagtgta tccgcatggt
+     5461 caaacacttt agcccgaccg gtgctcaagg tcgaaatcct aatatagatt gggataggac
+     5521 ccgtccatta ctaggcgaca ttcgcagtca cgagcccgca cggggtgcct caacacggtg
+     5581 acactcaatt cgccggcact gagtacgacg atcgtgattg ccataccgtc atgttttgtg
+     5641 ttacccctga taagaagcgc agatatggca cgggggcaga gggcggagta gacccatgca
+     5701 aaactctagc ctctgggcag catgatcgac gtagaacgcc gttgtgactc actagtttca
+     5761 gttatgatgt tcagccaaga atcctccatt ttgacgtgaa ccttctccct ttacaccttg
+     5821 aagctgcaat attaagtcga ccctttaagt tgccttgtct tggtctagag cccgcagctc
+     5881 accgataaaa tgagcagtca attttagcgg cggttgtcca ggttacatgc actttgggct
+     5941 ggaaccgcgt tacgtttgga gtacttagaa gtgtcgtagg cataggagag ccgaaacttg
+     6001 atattgggtc tagttagtgc tctaccccgc ttcggatccg taatagtgat gttgcatgag
+     6061 acgcttgcct caaggcgaca tacggtggcg gttgctggaa atgacgcccc accccgtgat
+     6121 aatttgggga cgagccgcac gataacttct gccagcgacc gcccctccca cgtccgatgg
+     6181 tgattccgaa ctccacctgc gtctatcgta cagtgctaaa atggcagcag atagtgaaac
+     6241 ttccgctaag ctagcccctc agggtacact gcaccgaggc gtgctgtcaa tacttgatta
+     6301 agtcgggttg tcggggacct gccgtcacgc ttccgagtgt atatccggat ttagttgacg
+     6361 tcatacagag gcactaagaa gaataaacgc ttacctccag caatcgtgta gtgtcaggtg
+     6421 tacgttctcc cttgcgccgt tcggcaagcg tccggtgtcg ggctgcaagg aataaatctt
+     6481 tatggaccag aggggcttgt ttcctcatat gggtgcgtgc acttatacga ttcaaaggtg
+     6541 gatatggccg cataacacgt agccaggcta tagtcccgcg gcctaattcc ttcgagtgcg
+     6601 ggtgcctgtt tttgtttttc ctttacgaca cgaaccgctc taacctgctc tatttcgcca
+     6661 cgttccagtg aacctcttag cctaccgccc acgtacggtg ggacgcgtcg agcagttaag
+     6721 gtactgtgga gaaatcgttc aatattagaa aacaggcggt gtacgaatta ctgtgtcccg
+     6781 gtgttgcccg tttaacggct gccgtggtca taccgtgagg caccacgagg ggatgctacg
+     6841 caacatgcga ggtgtaatca gcagggaaga tcccggggat cgaaagcggt ccgcgatttg
+     6901 cgaccgatat gcataaggtg tcatttatat tacacctacg acactggtac cggctcacag
+     6961 ccaaatgcac agtctcaaga tagaattcgc aaaaattagg cttatcgggc gcttactctt
+     7021 tgttacactt ctggtctgtg agtgacgccc tgtgtcccat cactgcatgt gaggatgcgt
+     7081 gtactgcacc tgtgaattac agacgtttcc ctaccagggc gctacgttat aatgttcggt
+     7141 tgcaaccctc tatagggtga tctcgacata ccactatggt ttgcgcgtct cgggtgcttt
+     7201 tggcgagggc caggtacggc ggtgagacag cgtattttgc gaatagggta ttcggacgca
+     7261 cggtgtatag ctcttggaaa acgactcttc gacgggcgtg tagaagtagc caagcagttc
+     7321 ggttgttatc actaaatgcg gaccatgtgc agccgtttag gagaggagtc tgcaatggat
+     7381 cagctggtca gattgtacca ctcggttgag cctaaggcac ttcaggtgct cggattgtaa
+     7441 tgaaccctca ggttacgccg ttgcgctgag atcccacaag ccataagcaa tgagaatcga
+     7501 gcagctatcg aattacgcag cacttgctga tgaactgggt gcacctaaag cgcccgataa
+     7561 aacggaggga gtgaggtaac tactacattg cgagtagtgc gaggggcctc cgagactaca
+     7621 ttagagcagc catgccgaat acgacaaaat ctatagcctt gcgaacgtag gggactgatt
+     7681 tatggacaac aggaccgaaa caagttggag ccacaacgga gctatggacg ttttcactat
+     7741 tgatgggtgg cttgcgtccg catcccaggt ttctctggtt aattttcatg acgattcttt
+     7801 gtggtacgat ccaggcataa gatagggcac ctaacccgat actgtgaact tatatgacgg
+     7861 ctgaacatgc cctaatagtc tgccaaaagg gaaacctata acggctctaa acgggccccg
+     7921 ggtacgtaac agcaatgttc ctgtccacca aggcgttttt agtaaccgcc gatcgatctc
+     7981 gatcgaattc cgttttacgc
+//
--- /dev/null	Thu Jan 01 00:00:00 1970 +0000
+++ b/test-data/init/gibson_assembly_simulation/construct_1/construct_1.gb	Fri May 16 11:32:06 2025 +0000
@@ -0,0 +1,191 @@
+LOCUS       construct_1             8000 bp    DNA     circular UNK 01-JAN-1980
+DEFINITION  .
+ACCESSION   construct_1
+VERSION     construct_1
+KEYWORDS    .
+SOURCE      .
+  ORGANISM  .
+            .
+FEATURES             Location/Qualifiers
+     homology        1781..1800
+                     /label="homology"
+                     /color="#f7e8f7"
+                     /ApEinfo_fwdcolor="#f7e8f7"
+     misc_feature    1781..3581
+                     /source="Frag_3"
+                     /indicates_part=True
+                     /note="From Frag_3"
+                     /color="white"
+                     /ApEinfo_fwdcolor="white"
+     homology        3582..3599
+                     /label="homology"
+                     /color="#f7e8f7"
+                     /ApEinfo_fwdcolor="#f7e8f7"
+     misc_feature    3582..4781
+                     /source="Frag_4"
+                     /indicates_part=True
+                     /note="From Frag_4"
+                     /color="white"
+                     /ApEinfo_fwdcolor="white"
+     homology        4782..4799
+                     /label="homology"
+                     /color="#f7e8f7"
+                     /ApEinfo_fwdcolor="#f7e8f7"
+     misc_feature    4782..6190
+                     /source="Frag_5"
+                     /indicates_part=True
+                     /note="From Frag_5"
+                     /color="white"
+                     /ApEinfo_fwdcolor="white"
+     misc_feature    6191..8000
+                     /source="Frag_1"
+                     /indicates_part=True
+                     /note="From Frag_1"
+                     /color="white"
+                     /ApEinfo_fwdcolor="white"
+     homology        6191..6209
+                     /label="homology"
+                     /color="#f7e8f7"
+                     /ApEinfo_fwdcolor="#f7e8f7"
+     misc_feature    8021..9800
+                     /source="Frag_2"
+                     /indicates_part=True
+                     /note="From Frag_2"
+                     /color="white"
+                     /ApEinfo_fwdcolor="white"
+ORIGIN
+        1 cccagatcgc agctcccttg acagtgtcag ttgaatcccc attctaggtt tcctgataaa
+       61 actaagtacg gggacgcatc agtcgaaagc aatcacagat aatagatatc ttgagcagaa
+      121 agacgtcttc acgaatcagg agcgagtgtc ccctttgaaa gtgcgggcaa caataggtgt
+      181 gaggtttcac ggttgcttga tcagtagctg ttcactctct cgcaggccta catagtgagg
+      241 tggtgagatt gttcaggtct gtctcctgcg cggttgtcga gccccgtcgg gcacgctaac
+      301 aaggacagga attcgggtcg tcaaataaca atttacgtca tcgcatccct caagggtaag
+      361 gcgtgatctc catctcggtt cccaattggt cattgtgata gccacactgc agttaccgaa
+      421 ggcgatttta tactaccctg ataagtgctc gcagcccctc ctccctaata atgtaacgac
+      481 gagcattaac ccaggagtat ttctcacgtt gctcgtgccc agccaaggcg atcaacgcag
+      541 accggatagc gttagctagc ccacgggtaa aagcgattgt tgtactcttt catatgaata
+      601 cagcactcgc gaatgcaagc ctacgtcggc tcgattctct tcctcaccac actggaggcg
+      661 atgatctagc ccgtctttca ccccgtacct ttatactcgg ccgcgtattt ctccaccggg
+      721 agctctgcct accaaagcgt cgtacgccca ggaagccgtt tcctttatcc tccctcatgt
+      781 ctcaacgcgc gagcatcgga gagtacgcga aatcgactgt ctggccaaca ctggacagac
+      841 gcgcgagacg ctgataaacc cccattttcg tggggttagt aaatcggtgg cttcaaacgg
+      901 ttcgatcgct cgcacgagca ttagtcagga gtatgattgc gcatcatctc tactccgtac
+      961 taggttctgt agctcaggat ctccgggggg atcaagcttt tatgtcccgc gggattagaa
+     1021 gatatccatc catatgttta ctttgatgcg ggtccgagct ctctatgatg ctgctttgac
+     1081 aaaatgtgga aagcctcagc gaccgctctg gggtcaaagc tctacgacac gttgatgcta
+     1141 aacaagttgg actactaagc aaatgaagcg gaagagatac tgagcgctct ctctatgact
+     1201 ttcgctatat ggcgacgtgc gaaaaacgcg atttggccga aatctcaaat aataatgcaa
+     1261 tgtgttggct aagctcgggc aaactcagga tgtgacctag taccctctgc cccgtgagta
+     1321 cccataccca atcaagccag cccaattcgc gataggtaca gataagcctt actcgtcccg
+     1381 atccttgact aaaacactca tcctcgatag tacgtgcctt gtagagtccg acggccatag
+     1441 gtaaacgacc agttagtgtc gtagggtcct ccactttagc tacgattgca actcccttac
+     1501 cttcgtgccg gcgcgctcct cttgctacca tcacgcttca aatcgggtgg aagaccaact
+     1561 gatgaatgag ggtgcagacc ccagtggagc ataatacgat gcgcccacga tactctagag
+     1621 ccacgcgtcg acgttcgtaa gatgtcccgg gcccgtgggt ggccacatcg gccgcccatc
+     1681 cttgtgtctt ccgataagta ctccctttca aggactctcc gataccggct tagaacacga
+     1741 acggacaacg ctttcagcgc tgagaaatga cggctgcttc aaccagaacg atacagcctt
+     1801 ctttgctaga tagcctctag tgtcagccac caagtccgcc acctaatcct tcgccgaggg
+     1861 tcaaagcttc tgaccatcca attgttaggc actcttggaa ccttgcaagt acctgatcat
+     1921 gcagaaaatg gacttgcccg gagcatattc attataagta ccattcacgg caggttatag
+     1981 tatgcgttga cgcggggtga tacggtaatg caagtaacca tcgggccgcg gtatgcacat
+     2041 agaagggtgt ttgacttggt ttcttacagt gcaactgcat atgtggaccg ccattccaag
+     2101 tgaaaggata cgaagggagg tttcggactg ctatccagag catggaaagc cttcaaggtg
+     2161 gtgcgcactg gaatagtgac tcggggattg tatgtcgagc cgcgtccagt ctttcctata
+     2221 cttatgcgag caaatagacc gagtggaact tgattgcatc agccgaatca cgatgaaaac
+     2281 tcagcttaca attcgtaagc acttcaaata tatgcccgga aaatcgccgt ccagtgactt
+     2341 gtaatagctc cagggtcagt agcgctgccc tggccgaacc aggtgacggt tacgtggacc
+     2401 tcacagtatc aatgttgcag tgcgccacca gattaagctg gccgtgtcat ggtgaacaac
+     2461 cgtgataaaa gaacgggagt atgagagtgc cacccaagag tggtactcca ggattcggaa
+     2521 aggggagggg gcttttcctg cttaacaacc ttcctcggca cggtctaagc gtctcactcg
+     2581 tcctaaactc taccatcatg cagctaggcg aaagtataac tttagggtct atcaggatga
+     2641 gctatctgta ccacggtgat gagataagta gggggtgcgc tagggtcgtt cgtgttttca
+     2701 tcgtctatag tacctatttc tcgtcttcca ttagcgcata cggccatctc gcggcggcta
+     2761 cgtcagccag cgtcaacccc aagtcactaa tttccgttat tataggtgta gctcataact
+     2821 tcttctgccg accaagccaa aagctttgcg gcagctgcaa ggccacgtta ggctctcgga
+     2881 cggcagatat ttattaataa caccactggg ttccagctct taacgcactt cccttcactg
+     2941 gatcacctgt acgcccataa gctaagcctg aagccacggc ctcaatcgtg gacattactc
+     3001 ttagcaaatc cacattacca tgtcaccaat ccccgaaccc cgcgccgacc taaggcgggg
+     3061 tacctcgtgc acggcagcat cgagggaaat atattacaaa agacgcggcg atccaacggt
+     3121 tgataaaaac agttccgtgg aaggcggacg tgtgcttagc gcatgcttct caccgagtga
+     3181 cagcaccgat tccatctcgc tagcacgccg atgagcctcg ctgtgggact atggtccagc
+     3241 ctatgcttaa ctaggcagaa cagagagtat ggtggtcctc ggtaaggtcg atttggtggc
+     3301 actcgcaaga tacgcgggtt attagtagag cgcagtcagg gcccatcgcc agcatttgca
+     3361 tgctcgccgt acgctatcct tgtactacgg ttcctcagtg gctataaagg aatgtcacaa
+     3421 ctccattagc cccttttgtt cagcgcttag tcatggtggg actgactcac cgagactaca
+     3481 tacggattgt gcccgcagag acatgccttt catgctgggg ttttgtaagc agctccacgg
+     3541 ggtagtgtca ccatgccttc gacctatgct tatgaaaccc gaggtaatgc ggcaggatcc
+     3601 cgtggatcct acgcttagcc tgtttaagcc atcgttctcc tcggccccca gccagcgcgt
+     3661 attccgcgca ttcctccgag tgcgtatcgc gcaaaccaca agatacctct caacgactag
+     3721 cggtgaacca ccaagcttga catacgtgcc ccttcggaaa cgttattagt ggtcctgagt
+     3781 ggtacgtccc gagtatacgg ggcagcgata gtaacgctac aaatagctag gcgaggttgc
+     3841 gatacctgaa tgaatatcca acagtggcaa cgagacgctt agaaagggaa actacatacc
+     3901 agttcaatcc gggatgactt caaaagggta tgtttgtttt gaagcgaagc tttggttgtc
+     3961 attcagttcc tagagtttac ggcgctgata tggctctagg agtccagtga attcgtcagc
+     4021 ataagcccca catcgtagga aattgcccgg tcgtcggtct agcaaatgct cggtaaactg
+     4081 ggagtgtact aacaccatgt cgtggtaacc cggtggaccg gctactagag acatatttat
+     4141 tcatgctcag ttgaacctgt ttcgaggggg ccgagttaac ataaagtgat tagtcacagc
+     4201 gcattaagat agaacaggga tatagctcgt tgcatccata aattgcccac cgtagggaga
+     4261 acgccgttgg aaaatgagag ttaggcgatg agcggttgtc gcccgcacag acaaaggatg
+     4321 cctttataaa tagtagcggc cttgtctgca ccagacgttt gtgggtcgac gtgctattct
+     4381 agccaaaagc aaaatgtatc atactacagg caataggccc tatgctgacc aaacttgggg
+     4441 acccttgcgc cttctctctt acgcataaca tgcataggta cctctactca tcaggcaggg
+     4501 cggcgtgagg tcactatggc tcaagatgtg tacgactaaa gaaaggttta tgctccttcc
+     4561 ccaaggacgc atttgggact gctacttgcc cctagcgaat tcactaggat ttttgtagaa
+     4621 ccatgagcgc cctatccgat agcacagaga caatgctaca agcaactgtg catgcgctcg
+     4681 atcgccgtgc attaatacgt attatagcgt atcgtgtacg ctaatatctt agtgcaccgc
+     4741 acgctggttg gatacaattc cgtgaaataa ttcctgctta cacaggggct ttctggcgca
+     4801 tggctgtgtc tggatgtttg tgataagagg ctccatgaac ccggcgggaa atgaggggaa
+     4861 accccgggga gcaacgacac taagcctggc agttgttcag ataggacgct tttgtcagtg
+     4921 ggcggttttg catccactaa ctatcataaa cgacacaacg tcgaatgatc atcggcggtt
+     4981 tgcatgtaga gacagctcct gcaacaccat accggctcgt ggaattacgc tgtgcgccgg
+     5041 ccctcattcg attgtgtcca gcgtcggcgc gaatgatgat tgagatgtgc ttcggctcag
+     5101 agcgtgcaca ggtagttctc cccccttacc tagctgatcc agcaattcca cgctggcccg
+     5161 cgcgtccttg ggtaacactg gatctgtacc caaatacacc gtcgtgattg ttaactaccg
+     5221 tatggcggtt acgatcgagt gacactatta ttagaccgct actccaagtc ccaacttttc
+     5281 atcgccatac agaagagaac gagaaagtcg aagagttata gcgtgtacac ttctgattag
+     5341 ctaacgaatc gatgcgtaca gcatactcga gcaactttat gggtcgtctg tctccttgta
+     5401 ccccgcttga cgaggatgtg tttgtaggcg gcttggatat cggcagtgta tccgcatggt
+     5461 caaacacttt agcccgaccg gtgctcaagg tcgaaatcct aatatagatt gggataggac
+     5521 ccgtccatta ctaggcgaca ttcgcagtca cgagcccgca cggggtgcct caacacggtg
+     5581 acactcaatt cgccggcact gagtacgacg atcgtgattg ccataccgtc atgttttgtg
+     5641 ttacccctga taagaagcgc agatatggca cgggggcaga gggcggagta gacccatgca
+     5701 aaactctagc ctctgggcag catgatcgac gtagaacgcc gttgtgactc actagtttca
+     5761 gttatgatgt tcagccaaga atcctccatt ttgacgtgaa ccttctccct ttacaccttg
+     5821 aagctgcaat attaagtcga ccctttaagt tgccttgtct tggtctagag cccgcagctc
+     5881 accgataaaa tgagcagtca attttagcgg cggttgtcca ggttacatgc actttgggct
+     5941 ggaaccgcgt tacgtttgga gtacttagaa gtgtcgtagg cataggagag ccgaaacttg
+     6001 atattgggtc tagttagtgc tctaccccgc ttcggatccg taatagtgat gttgcatgag
+     6061 acgcttgcct caaggcgaca tacggtggcg gttgctggaa atgacgcccc accccgtgat
+     6121 aatttgggga cgagccgcac gataacttct gccagcgacc gcccctccca cgtccgatgg
+     6181 tgattccgaa ctccacctgc gtctatcgta cagtgctaaa atggcagcag atagtgaaac
+     6241 ttccgctaag ctagcccctc agggtacact gcaccgaggc gtgctgtcaa tacttgatta
+     6301 agtcgggttg tcggggacct gccgtcacgc ttccgagtgt atatccggat ttagttgacg
+     6361 tcatacagag gcactaagaa gaataaacgc ttacctccag caatcgtgta gtgtcaggtg
+     6421 tacgttctcc cttgcgccgt tcggcaagcg tccggtgtcg ggctgcaagg aataaatctt
+     6481 tatggaccag aggggcttgt ttcctcatat gggtgcgtgc acttatacga ttcaaaggtg
+     6541 gatatggccg cataacacgt agccaggcta tagtcccgcg gcctaattcc ttcgagtgcg
+     6601 ggtgcctgtt tttgtttttc ctttacgaca cgaaccgctc taacctgctc tatttcgcca
+     6661 cgttccagtg aacctcttag cctaccgccc acgtacggtg ggacgcgtcg agcagttaag
+     6721 gtactgtgga gaaatcgttc aatattagaa aacaggcggt gtacgaatta ctgtgtcccg
+     6781 gtgttgcccg tttaacggct gccgtggtca taccgtgagg caccacgagg ggatgctacg
+     6841 caacatgcga ggtgtaatca gcagggaaga tcccggggat cgaaagcggt ccgcgatttg
+     6901 cgaccgatat gcataaggtg tcatttatat tacacctacg acactggtac cggctcacag
+     6961 ccaaatgcac agtctcaaga tagaattcgc aaaaattagg cttatcgggc gcttactctt
+     7021 tgttacactt ctggtctgtg agtgacgccc tgtgtcccat cactgcatgt gaggatgcgt
+     7081 gtactgcacc tgtgaattac agacgtttcc ctaccagggc gctacgttat aatgttcggt
+     7141 tgcaaccctc tatagggtga tctcgacata ccactatggt ttgcgcgtct cgggtgcttt
+     7201 tggcgagggc caggtacggc ggtgagacag cgtattttgc gaatagggta ttcggacgca
+     7261 cggtgtatag ctcttggaaa acgactcttc gacgggcgtg tagaagtagc caagcagttc
+     7321 ggttgttatc actaaatgcg gaccatgtgc agccgtttag gagaggagtc tgcaatggat
+     7381 cagctggtca gattgtacca ctcggttgag cctaaggcac ttcaggtgct cggattgtaa
+     7441 tgaaccctca ggttacgccg ttgcgctgag atcccacaag ccataagcaa tgagaatcga
+     7501 gcagctatcg aattacgcag cacttgctga tgaactgggt gcacctaaag cgcccgataa
+     7561 aacggaggga gtgaggtaac tactacattg cgagtagtgc gaggggcctc cgagactaca
+     7621 ttagagcagc catgccgaat acgacaaaat ctatagcctt gcgaacgtag gggactgatt
+     7681 tatggacaac aggaccgaaa caagttggag ccacaacgga gctatggacg ttttcactat
+     7741 tgatgggtgg cttgcgtccg catcccaggt ttctctggtt aattttcatg acgattcttt
+     7801 gtggtacgat ccaggcataa gatagggcac ctaacccgat actgtgaact tatatgacgg
+     7861 ctgaacatgc cctaatagtc tgccaaaagg gaaacctata acggctctaa acgggccccg
+     7921 ggtacgtaac agcaatgttc ctgtccacca aggcgttttt agtaaccgcc gatcgatctc
+     7981 gatcgaattc cgttttacgc
+//
Binary file test-data/init/gibson_assembly_simulation/construct_1/construct_1.pdf has changed
Binary file test-data/init/gibson_assembly_simulation/construct_1/construct_1_connections_graph.pdf has changed
--- /dev/null	Thu Jan 01 00:00:00 1970 +0000
+++ b/test-data/init/gibson_assembly_simulation/construct_1/construct_1_summary.csv	Fri May 16 11:32:06 2025 +0000
@@ -0,0 +1,2 @@
+assembly_name,construct_id,assembly_level,construct_size,number_of_parts,depends_on,homology_condition,used_in,parts
+construct_1,construct_1,1,8000,5,,"15-80bp, 0.0-+C Tm",,Frag_2 & Frag_3 & Frag_4 & Frag_5 & Frag_1
--- /dev/null	Thu Jan 01 00:00:00 1970 +0000
+++ b/test-data/init/gibson_assembly_simulation/construct_1/provided_parts_records/Frag_1.gb	Fri May 16 11:32:06 2025 +0000
@@ -0,0 +1,42 @@
+LOCUS       Frag_1                  1810 bp    DNA     circular UNK 01-JAN-1980
+DEFINITION  Frag_1.
+ACCESSION   Frag_1
+VERSION     Frag_1
+KEYWORDS    .
+SOURCE      .
+  ORGANISM  .
+            .
+FEATURES             Location/Qualifiers
+ORIGIN
+        1 ctccacctgc gtctatcgta cagtgctaaa atggcagcag atagtgaaac ttccgctaag
+       61 ctagcccctc agggtacact gcaccgaggc gtgctgtcaa tacttgatta agtcgggttg
+      121 tcggggacct gccgtcacgc ttccgagtgt atatccggat ttagttgacg tcatacagag
+      181 gcactaagaa gaataaacgc ttacctccag caatcgtgta gtgtcaggtg tacgttctcc
+      241 cttgcgccgt tcggcaagcg tccggtgtcg ggctgcaagg aataaatctt tatggaccag
+      301 aggggcttgt ttcctcatat gggtgcgtgc acttatacga ttcaaaggtg gatatggccg
+      361 cataacacgt agccaggcta tagtcccgcg gcctaattcc ttcgagtgcg ggtgcctgtt
+      421 tttgtttttc ctttacgaca cgaaccgctc taacctgctc tatttcgcca cgttccagtg
+      481 aacctcttag cctaccgccc acgtacggtg ggacgcgtcg agcagttaag gtactgtgga
+      541 gaaatcgttc aatattagaa aacaggcggt gtacgaatta ctgtgtcccg gtgttgcccg
+      601 tttaacggct gccgtggtca taccgtgagg caccacgagg ggatgctacg caacatgcga
+      661 ggtgtaatca gcagggaaga tcccggggat cgaaagcggt ccgcgatttg cgaccgatat
+      721 gcataaggtg tcatttatat tacacctacg acactggtac cggctcacag ccaaatgcac
+      781 agtctcaaga tagaattcgc aaaaattagg cttatcgggc gcttactctt tgttacactt
+      841 ctggtctgtg agtgacgccc tgtgtcccat cactgcatgt gaggatgcgt gtactgcacc
+      901 tgtgaattac agacgtttcc ctaccagggc gctacgttat aatgttcggt tgcaaccctc
+      961 tatagggtga tctcgacata ccactatggt ttgcgcgtct cgggtgcttt tggcgagggc
+     1021 caggtacggc ggtgagacag cgtattttgc gaatagggta ttcggacgca cggtgtatag
+     1081 ctcttggaaa acgactcttc gacgggcgtg tagaagtagc caagcagttc ggttgttatc
+     1141 actaaatgcg gaccatgtgc agccgtttag gagaggagtc tgcaatggat cagctggtca
+     1201 gattgtacca ctcggttgag cctaaggcac ttcaggtgct cggattgtaa tgaaccctca
+     1261 ggttacgccg ttgcgctgag atcccacaag ccataagcaa tgagaatcga gcagctatcg
+     1321 aattacgcag cacttgctga tgaactgggt gcacctaaag cgcccgataa aacggaggga
+     1381 gtgaggtaac tactacattg cgagtagtgc gaggggcctc cgagactaca ttagagcagc
+     1441 catgccgaat acgacaaaat ctatagcctt gcgaacgtag gggactgatt tatggacaac
+     1501 aggaccgaaa caagttggag ccacaacgga gctatggacg ttttcactat tgatgggtgg
+     1561 cttgcgtccg catcccaggt ttctctggtt aattttcatg acgattcttt gtggtacgat
+     1621 ccaggcataa gatagggcac ctaacccgat actgtgaact tatatgacgg ctgaacatgc
+     1681 cctaatagtc tgccaaaagg gaaacctata acggctctaa acgggccccg ggtacgtaac
+     1741 agcaatgttc ctgtccacca aggcgttttt agtaaccgcc gatcgatctc gatcgaattc
+     1801 cgttttacgc
+//
--- /dev/null	Thu Jan 01 00:00:00 1970 +0000
+++ b/test-data/init/gibson_assembly_simulation/construct_1/provided_parts_records/Frag_2.gb	Fri May 16 11:32:06 2025 +0000
@@ -0,0 +1,42 @@
+LOCUS       Frag_2                  1820 bp    DNA     circular UNK 01-JAN-1980
+DEFINITION  Frag_2.
+ACCESSION   Frag_2
+VERSION     Frag_2
+KEYWORDS    .
+SOURCE      .
+  ORGANISM  .
+            .
+FEATURES             Location/Qualifiers
+ORIGIN
+        1 gatcgaattc cgttttacgc cccagatcgc agctcccttg acagtgtcag ttgaatcccc
+       61 attctaggtt tcctgataaa actaagtacg gggacgcatc agtcgaaagc aatcacagat
+      121 aatagatatc ttgagcagaa agacgtcttc acgaatcagg agcgagtgtc ccctttgaaa
+      181 gtgcgggcaa caataggtgt gaggtttcac ggttgcttga tcagtagctg ttcactctct
+      241 cgcaggccta catagtgagg tggtgagatt gttcaggtct gtctcctgcg cggttgtcga
+      301 gccccgtcgg gcacgctaac aaggacagga attcgggtcg tcaaataaca atttacgtca
+      361 tcgcatccct caagggtaag gcgtgatctc catctcggtt cccaattggt cattgtgata
+      421 gccacactgc agttaccgaa ggcgatttta tactaccctg ataagtgctc gcagcccctc
+      481 ctccctaata atgtaacgac gagcattaac ccaggagtat ttctcacgtt gctcgtgccc
+      541 agccaaggcg atcaacgcag accggatagc gttagctagc ccacgggtaa aagcgattgt
+      601 tgtactcttt catatgaata cagcactcgc gaatgcaagc ctacgtcggc tcgattctct
+      661 tcctcaccac actggaggcg atgatctagc ccgtctttca ccccgtacct ttatactcgg
+      721 ccgcgtattt ctccaccggg agctctgcct accaaagcgt cgtacgccca ggaagccgtt
+      781 tcctttatcc tccctcatgt ctcaacgcgc gagcatcgga gagtacgcga aatcgactgt
+      841 ctggccaaca ctggacagac gcgcgagacg ctgataaacc cccattttcg tggggttagt
+      901 aaatcggtgg cttcaaacgg ttcgatcgct cgcacgagca ttagtcagga gtatgattgc
+      961 gcatcatctc tactccgtac taggttctgt agctcaggat ctccgggggg atcaagcttt
+     1021 tatgtcccgc gggattagaa gatatccatc catatgttta ctttgatgcg ggtccgagct
+     1081 ctctatgatg ctgctttgac aaaatgtgga aagcctcagc gaccgctctg gggtcaaagc
+     1141 tctacgacac gttgatgcta aacaagttgg actactaagc aaatgaagcg gaagagatac
+     1201 tgagcgctct ctctatgact ttcgctatat ggcgacgtgc gaaaaacgcg atttggccga
+     1261 aatctcaaat aataatgcaa tgtgttggct aagctcgggc aaactcagga tgtgacctag
+     1321 taccctctgc cccgtgagta cccataccca atcaagccag cccaattcgc gataggtaca
+     1381 gataagcctt actcgtcccg atccttgact aaaacactca tcctcgatag tacgtgcctt
+     1441 gtagagtccg acggccatag gtaaacgacc agttagtgtc gtagggtcct ccactttagc
+     1501 tacgattgca actcccttac cttcgtgccg gcgcgctcct cttgctacca tcacgcttca
+     1561 aatcgggtgg aagaccaact gatgaatgag ggtgcagacc ccagtggagc ataatacgat
+     1621 gcgcccacga tactctagag ccacgcgtcg acgttcgtaa gatgtcccgg gcccgtgggt
+     1681 ggccacatcg gccgcccatc cttgtgtctt ccgataagta ctccctttca aggactctcc
+     1741 gataccggct tagaacacga acggacaacg ctttcagcgc tgagaaatga cggctgcttc
+     1801 aaccagaacg atacagcctt
+//
--- /dev/null	Thu Jan 01 00:00:00 1970 +0000
+++ b/test-data/init/gibson_assembly_simulation/construct_1/provided_parts_records/Frag_3.gb	Fri May 16 11:32:06 2025 +0000
@@ -0,0 +1,42 @@
+LOCUS       Frag_3                  1819 bp    DNA     circular UNK 01-JAN-1980
+DEFINITION  Frag_3.
+ACCESSION   Frag_3
+VERSION     Frag_3
+KEYWORDS    .
+SOURCE      .
+  ORGANISM  .
+            .
+FEATURES             Location/Qualifiers
+ORIGIN
+        1 aaccagaacg atacagcctt ctttgctaga tagcctctag tgtcagccac caagtccgcc
+       61 acctaatcct tcgccgaggg tcaaagcttc tgaccatcca attgttaggc actcttggaa
+      121 ccttgcaagt acctgatcat gcagaaaatg gacttgcccg gagcatattc attataagta
+      181 ccattcacgg caggttatag tatgcgttga cgcggggtga tacggtaatg caagtaacca
+      241 tcgggccgcg gtatgcacat agaagggtgt ttgacttggt ttcttacagt gcaactgcat
+      301 atgtggaccg ccattccaag tgaaaggata cgaagggagg tttcggactg ctatccagag
+      361 catggaaagc cttcaaggtg gtgcgcactg gaatagtgac tcggggattg tatgtcgagc
+      421 cgcgtccagt ctttcctata cttatgcgag caaatagacc gagtggaact tgattgcatc
+      481 agccgaatca cgatgaaaac tcagcttaca attcgtaagc acttcaaata tatgcccgga
+      541 aaatcgccgt ccagtgactt gtaatagctc cagggtcagt agcgctgccc tggccgaacc
+      601 aggtgacggt tacgtggacc tcacagtatc aatgttgcag tgcgccacca gattaagctg
+      661 gccgtgtcat ggtgaacaac cgtgataaaa gaacgggagt atgagagtgc cacccaagag
+      721 tggtactcca ggattcggaa aggggagggg gcttttcctg cttaacaacc ttcctcggca
+      781 cggtctaagc gtctcactcg tcctaaactc taccatcatg cagctaggcg aaagtataac
+      841 tttagggtct atcaggatga gctatctgta ccacggtgat gagataagta gggggtgcgc
+      901 tagggtcgtt cgtgttttca tcgtctatag tacctatttc tcgtcttcca ttagcgcata
+      961 cggccatctc gcggcggcta cgtcagccag cgtcaacccc aagtcactaa tttccgttat
+     1021 tataggtgta gctcataact tcttctgccg accaagccaa aagctttgcg gcagctgcaa
+     1081 ggccacgtta ggctctcgga cggcagatat ttattaataa caccactggg ttccagctct
+     1141 taacgcactt cccttcactg gatcacctgt acgcccataa gctaagcctg aagccacggc
+     1201 ctcaatcgtg gacattactc ttagcaaatc cacattacca tgtcaccaat ccccgaaccc
+     1261 cgcgccgacc taaggcgggg tacctcgtgc acggcagcat cgagggaaat atattacaaa
+     1321 agacgcggcg atccaacggt tgataaaaac agttccgtgg aaggcggacg tgtgcttagc
+     1381 gcatgcttct caccgagtga cagcaccgat tccatctcgc tagcacgccg atgagcctcg
+     1441 ctgtgggact atggtccagc ctatgcttaa ctaggcagaa cagagagtat ggtggtcctc
+     1501 ggtaaggtcg atttggtggc actcgcaaga tacgcgggtt attagtagag cgcagtcagg
+     1561 gcccatcgcc agcatttgca tgctcgccgt acgctatcct tgtactacgg ttcctcagtg
+     1621 gctataaagg aatgtcacaa ctccattagc cccttttgtt cagcgcttag tcatggtggg
+     1681 actgactcac cgagactaca tacggattgt gcccgcagag acatgccttt catgctgggg
+     1741 ttttgtaagc agctccacgg ggtagtgtca ccatgccttc gacctatgct tatgaaaccc
+     1801 gaggtaatgc ggcaggatc
+//
--- /dev/null	Thu Jan 01 00:00:00 1970 +0000
+++ b/test-data/init/gibson_assembly_simulation/construct_1/provided_parts_records/Frag_4.gb	Fri May 16 11:32:06 2025 +0000
@@ -0,0 +1,32 @@
+LOCUS       Frag_4                  1218 bp    DNA     circular UNK 01-JAN-1980
+DEFINITION  Frag_4.
+ACCESSION   Frag_4
+VERSION     Frag_4
+KEYWORDS    .
+SOURCE      .
+  ORGANISM  .
+            .
+FEATURES             Location/Qualifiers
+ORIGIN
+        1 aggtaatgcg gcaggatccc gtggatccta cgcttagcct gtttaagcca tcgttctcct
+       61 cggcccccag ccagcgcgta ttccgcgcat tcctccgagt gcgtatcgcg caaaccacaa
+      121 gatacctctc aacgactagc ggtgaaccac caagcttgac atacgtgccc cttcggaaac
+      181 gttattagtg gtcctgagtg gtacgtcccg agtatacggg gcagcgatag taacgctaca
+      241 aatagctagg cgaggttgcg atacctgaat gaatatccaa cagtggcaac gagacgctta
+      301 gaaagggaaa ctacatacca gttcaatccg ggatgacttc aaaagggtat gtttgttttg
+      361 aagcgaagct ttggttgtca ttcagttcct agagtttacg gcgctgatat ggctctagga
+      421 gtccagtgaa ttcgtcagca taagccccac atcgtaggaa attgcccggt cgtcggtcta
+      481 gcaaatgctc ggtaaactgg gagtgtacta acaccatgtc gtggtaaccc ggtggaccgg
+      541 ctactagaga catatttatt catgctcagt tgaacctgtt tcgagggggc cgagttaaca
+      601 taaagtgatt agtcacagcg cattaagata gaacagggat atagctcgtt gcatccataa
+      661 attgcccacc gtagggagaa cgccgttgga aaatgagagt taggcgatga gcggttgtcg
+      721 cccgcacaga caaaggatgc ctttataaat agtagcggcc ttgtctgcac cagacgtttg
+      781 tgggtcgacg tgctattcta gccaaaagca aaatgtatca tactacaggc aataggccct
+      841 atgctgacca aacttgggga cccttgcgcc ttctctctta cgcataacat gcataggtac
+      901 ctctactcat caggcagggc ggcgtgaggt cactatggct caagatgtgt acgactaaag
+      961 aaaggtttat gctccttccc caaggacgca tttgggactg ctacttgccc ctagcgaatt
+     1021 cactaggatt tttgtagaac catgagcgcc ctatccgata gcacagagac aatgctacaa
+     1081 gcaactgtgc atgcgctcga tcgccgtgca ttaatacgta ttatagcgta tcgtgtacgc
+     1141 taatatctta gtgcaccgca cgctggttgg atacaattcc gtgaaataat tcctgcttac
+     1201 acaggggctt tctggcgc
+//
--- /dev/null	Thu Jan 01 00:00:00 1970 +0000
+++ b/test-data/init/gibson_assembly_simulation/construct_1/provided_parts_records/Frag_5.gb	Fri May 16 11:32:06 2025 +0000
@@ -0,0 +1,35 @@
+LOCUS       Frag_5                  1428 bp    DNA     circular UNK 01-JAN-1980
+DEFINITION  Frag_5.
+ACCESSION   Frag_5
+VERSION     Frag_5
+KEYWORDS    .
+SOURCE      .
+  ORGANISM  .
+            .
+FEATURES             Location/Qualifiers
+ORIGIN
+        1 acaggggctt tctggcgcat ggctgtgtct ggatgtttgt gataagaggc tccatgaacc
+       61 cggcgggaaa tgaggggaaa ccccggggag caacgacact aagcctggca gttgttcaga
+      121 taggacgctt ttgtcagtgg gcggttttgc atccactaac tatcataaac gacacaacgt
+      181 cgaatgatca tcggcggttt gcatgtagag acagctcctg caacaccata ccggctcgtg
+      241 gaattacgct gtgcgccggc cctcattcga ttgtgtccag cgtcggcgcg aatgatgatt
+      301 gagatgtgct tcggctcaga gcgtgcacag gtagttctcc ccccttacct agctgatcca
+      361 gcaattccac gctggcccgc gcgtccttgg gtaacactgg atctgtaccc aaatacaccg
+      421 tcgtgattgt taactaccgt atggcggtta cgatcgagtg acactattat tagaccgcta
+      481 ctccaagtcc caacttttca tcgccataca gaagagaacg agaaagtcga agagttatag
+      541 cgtgtacact tctgattagc taacgaatcg atgcgtacag catactcgag caactttatg
+      601 ggtcgtctgt ctccttgtac cccgcttgac gaggatgtgt ttgtaggcgg cttggatatc
+      661 ggcagtgtat ccgcatggtc aaacacttta gcccgaccgg tgctcaaggt cgaaatccta
+      721 atatagattg ggataggacc cgtccattac taggcgacat tcgcagtcac gagcccgcac
+      781 ggggtgcctc aacacggtga cactcaattc gccggcactg agtacgacga tcgtgattgc
+      841 cataccgtca tgttttgtgt tacccctgat aagaagcgca gatatggcac gggggcagag
+      901 ggcggagtag acccatgcaa aactctagcc tctgggcagc atgatcgacg tagaacgccg
+      961 ttgtgactca ctagtttcag ttatgatgtt cagccaagaa tcctccattt tgacgtgaac
+     1021 cttctccctt tacaccttga agctgcaata ttaagtcgac cctttaagtt gccttgtctt
+     1081 ggtctagagc ccgcagctca ccgataaaat gagcagtcaa ttttagcggc ggttgtccag
+     1141 gttacatgca ctttgggctg gaaccgcgtt acgtttggag tacttagaag tgtcgtaggc
+     1201 ataggagagc cgaaacttga tattgggtct agttagtgct ctaccccgct tcggatccgt
+     1261 aatagtgatg ttgcatgaga cgcttgcctc aaggcgacat acggtggcgg ttgctggaaa
+     1321 tgacgcccca ccccgtgata atttggggac gagccgcacg ataacttctg ccagcgaccg
+     1381 cccctcccac gtccgatggt gattccgaac tccacctgcg tctatcgt
+//
--- /dev/null	Thu Jan 01 00:00:00 1970 +0000
+++ b/test-data/init/gibson_assembly_simulation/construct_2/construct_2.gb	Fri May 16 11:32:06 2025 +0000
@@ -0,0 +1,191 @@
+LOCUS       construct_2             8000 bp    DNA     circular UNK 01-JAN-1980
+DEFINITION  .
+ACCESSION   construct_2
+VERSION     construct_2
+KEYWORDS    .
+SOURCE      .
+  ORGANISM  .
+            .
+FEATURES             Location/Qualifiers
+     homology        1781..1800
+                     /label="homology"
+                     /color="#f7e8f7"
+                     /ApEinfo_fwdcolor="#f7e8f7"
+     misc_feature    1781..3581
+                     /source="Frag_3"
+                     /indicates_part=True
+                     /note="From Frag_3"
+                     /color="white"
+                     /ApEinfo_fwdcolor="white"
+     homology        3582..3599
+                     /label="homology"
+                     /color="#f7e8f7"
+                     /ApEinfo_fwdcolor="#f7e8f7"
+     misc_feature    3582..4781
+                     /source="Frag_4b"
+                     /indicates_part=True
+                     /note="From Frag_4b"
+                     /color="white"
+                     /ApEinfo_fwdcolor="white"
+     homology        4782..4799
+                     /label="homology"
+                     /color="#f7e8f7"
+                     /ApEinfo_fwdcolor="#f7e8f7"
+     misc_feature    4782..6190
+                     /source="Frag_5"
+                     /indicates_part=True
+                     /note="From Frag_5"
+                     /color="white"
+                     /ApEinfo_fwdcolor="white"
+     misc_feature    6191..8000
+                     /source="Frag_1"
+                     /indicates_part=True
+                     /note="From Frag_1"
+                     /color="white"
+                     /ApEinfo_fwdcolor="white"
+     homology        6191..6209
+                     /label="homology"
+                     /color="#f7e8f7"
+                     /ApEinfo_fwdcolor="#f7e8f7"
+     misc_feature    8021..9800
+                     /source="Frag_2"
+                     /indicates_part=True
+                     /note="From Frag_2"
+                     /color="white"
+                     /ApEinfo_fwdcolor="white"
+ORIGIN
+        1 cccagatcgc agctcccttg acagtgtcag ttgaatcccc attctaggtt tcctgataaa
+       61 actaagtacg gggacgcatc agtcgaaagc aatcacagat aatagatatc ttgagcagaa
+      121 agacgtcttc acgaatcagg agcgagtgtc ccctttgaaa gtgcgggcaa caataggtgt
+      181 gaggtttcac ggttgcttga tcagtagctg ttcactctct cgcaggccta catagtgagg
+      241 tggtgagatt gttcaggtct gtctcctgcg cggttgtcga gccccgtcgg gcacgctaac
+      301 aaggacagga attcgggtcg tcaaataaca atttacgtca tcgcatccct caagggtaag
+      361 gcgtgatctc catctcggtt cccaattggt cattgtgata gccacactgc agttaccgaa
+      421 ggcgatttta tactaccctg ataagtgctc gcagcccctc ctccctaata atgtaacgac
+      481 gagcattaac ccaggagtat ttctcacgtt gctcgtgccc agccaaggcg atcaacgcag
+      541 accggatagc gttagctagc ccacgggtaa aagcgattgt tgtactcttt catatgaata
+      601 cagcactcgc gaatgcaagc ctacgtcggc tcgattctct tcctcaccac actggaggcg
+      661 atgatctagc ccgtctttca ccccgtacct ttatactcgg ccgcgtattt ctccaccggg
+      721 agctctgcct accaaagcgt cgtacgccca ggaagccgtt tcctttatcc tccctcatgt
+      781 ctcaacgcgc gagcatcgga gagtacgcga aatcgactgt ctggccaaca ctggacagac
+      841 gcgcgagacg ctgataaacc cccattttcg tggggttagt aaatcggtgg cttcaaacgg
+      901 ttcgatcgct cgcacgagca ttagtcagga gtatgattgc gcatcatctc tactccgtac
+      961 taggttctgt agctcaggat ctccgggggg atcaagcttt tatgtcccgc gggattagaa
+     1021 gatatccatc catatgttta ctttgatgcg ggtccgagct ctctatgatg ctgctttgac
+     1081 aaaatgtgga aagcctcagc gaccgctctg gggtcaaagc tctacgacac gttgatgcta
+     1141 aacaagttgg actactaagc aaatgaagcg gaagagatac tgagcgctct ctctatgact
+     1201 ttcgctatat ggcgacgtgc gaaaaacgcg atttggccga aatctcaaat aataatgcaa
+     1261 tgtgttggct aagctcgggc aaactcagga tgtgacctag taccctctgc cccgtgagta
+     1321 cccataccca atcaagccag cccaattcgc gataggtaca gataagcctt actcgtcccg
+     1381 atccttgact aaaacactca tcctcgatag tacgtgcctt gtagagtccg acggccatag
+     1441 gtaaacgacc agttagtgtc gtagggtcct ccactttagc tacgattgca actcccttac
+     1501 cttcgtgccg gcgcgctcct cttgctacca tcacgcttca aatcgggtgg aagaccaact
+     1561 gatgaatgag ggtgcagacc ccagtggagc ataatacgat gcgcccacga tactctagag
+     1621 ccacgcgtcg acgttcgtaa gatgtcccgg gcccgtgggt ggccacatcg gccgcccatc
+     1681 cttgtgtctt ccgataagta ctccctttca aggactctcc gataccggct tagaacacga
+     1741 acggacaacg ctttcagcgc tgagaaatga cggctgcttc aaccagaacg atacagcctt
+     1801 ctttgctaga tagcctctag tgtcagccac caagtccgcc acctaatcct tcgccgaggg
+     1861 tcaaagcttc tgaccatcca attgttaggc actcttggaa ccttgcaagt acctgatcat
+     1921 gcagaaaatg gacttgcccg gagcatattc attataagta ccattcacgg caggttatag
+     1981 tatgcgttga cgcggggtga tacggtaatg caagtaacca tcgggccgcg gtatgcacat
+     2041 agaagggtgt ttgacttggt ttcttacagt gcaactgcat atgtggaccg ccattccaag
+     2101 tgaaaggata cgaagggagg tttcggactg ctatccagag catggaaagc cttcaaggtg
+     2161 gtgcgcactg gaatagtgac tcggggattg tatgtcgagc cgcgtccagt ctttcctata
+     2221 cttatgcgag caaatagacc gagtggaact tgattgcatc agccgaatca cgatgaaaac
+     2281 tcagcttaca attcgtaagc acttcaaata tatgcccgga aaatcgccgt ccagtgactt
+     2341 gtaatagctc cagggtcagt agcgctgccc tggccgaacc aggtgacggt tacgtggacc
+     2401 tcacagtatc aatgttgcag tgcgccacca gattaagctg gccgtgtcat ggtgaacaac
+     2461 cgtgataaaa gaacgggagt atgagagtgc cacccaagag tggtactcca ggattcggaa
+     2521 aggggagggg gcttttcctg cttaacaacc ttcctcggca cggtctaagc gtctcactcg
+     2581 tcctaaactc taccatcatg cagctaggcg aaagtataac tttagggtct atcaggatga
+     2641 gctatctgta ccacggtgat gagataagta gggggtgcgc tagggtcgtt cgtgttttca
+     2701 tcgtctatag tacctatttc tcgtcttcca ttagcgcata cggccatctc gcggcggcta
+     2761 cgtcagccag cgtcaacccc aagtcactaa tttccgttat tataggtgta gctcataact
+     2821 tcttctgccg accaagccaa aagctttgcg gcagctgcaa ggccacgtta ggctctcgga
+     2881 cggcagatat ttattaataa caccactggg ttccagctct taacgcactt cccttcactg
+     2941 gatcacctgt acgcccataa gctaagcctg aagccacggc ctcaatcgtg gacattactc
+     3001 ttagcaaatc cacattacca tgtcaccaat ccccgaaccc cgcgccgacc taaggcgggg
+     3061 tacctcgtgc acggcagcat cgagggaaat atattacaaa agacgcggcg atccaacggt
+     3121 tgataaaaac agttccgtgg aaggcggacg tgtgcttagc gcatgcttct caccgagtga
+     3181 cagcaccgat tccatctcgc tagcacgccg atgagcctcg ctgtgggact atggtccagc
+     3241 ctatgcttaa ctaggcagaa cagagagtat ggtggtcctc ggtaaggtcg atttggtggc
+     3301 actcgcaaga tacgcgggtt attagtagag cgcagtcagg gcccatcgcc agcatttgca
+     3361 tgctcgccgt acgctatcct tgtactacgg ttcctcagtg gctataaagg aatgtcacaa
+     3421 ctccattagc cccttttgtt cagcgcttag tcatggtggg actgactcac cgagactaca
+     3481 tacggattgt gcccgcagag acatgccttt catgctgggg ttttgtaagc agctccacgg
+     3541 ggtagtgtca ccatgccttc gacctatgct tatgaaaccc gaggtaatgc ggcaggatcc
+     3601 cgtggatcct acgcttagcc tgttaccccc cccgttctcc tcggccccca gccagcgcgt
+     3661 attccgcgca ttcctccgag tgcgtatcgc gcaaaccaca agatacctct caacgactag
+     3721 cggtgaacca ccaagcttga catacgtgcc ccttcggaaa cgttattagt ggtcctgagt
+     3781 ggtacgtccc gagtatacgg ggcagcgata gtaacgctac aaatagctag accgacgaca
+     3841 aacacagcac tgaatatcca acagtggcaa cgagacgctt agaaagggaa actacatacc
+     3901 agttcaatcc gggatgactt caaaagggta tgtttgtttt gaagcgaagc tttggttgtc
+     3961 attcagttcc tagagtttac ggcgctgata tggctctagg agtccagtga attcgtcagc
+     4021 ataagcccca catcgtagga aattgcccgg tcgtcggtct agcaaatgct cggtaaactg
+     4081 ggagtgtact aacaccatgt cgtggtaacc cggtggaccg gctactagag acatatttat
+     4141 tcatgctcag ttgaacctgt ttcgaggggg ccgagttaac ataaagtgat tagtcacagc
+     4201 gcattaagat agaacaggga tatagctcgt tgcatccata aattgcccac cgtagggaga
+     4261 acgccgttgg aaaatgagag ttaggcgatg agcggttgtc gcccgcacag acaaaggatg
+     4321 cctttataaa tagtagcggc cttgtctgca ccagacgttt gtgggtcgac gtgctattct
+     4381 agccaaaagc aaaatgtatc atactacagg caataggccc tatgctgacc aaacttgggg
+     4441 acccttgcgc cttctctctt acgcataaca tgcataggta cctctactca tcaggcaggg
+     4501 cggcgtgagg tcactatggc tcaagatgtg tacgactaaa gaaaggttta tgctccttcc
+     4561 ccaaggacgc atttgggact gctacttgcc cctagcgaat tcactaggat ttttgtagaa
+     4621 ccatgagcgc cctatccgat agcacagaga caatgctaca agcaactgtg catgcgctcg
+     4681 atcgccgtgc attaatacgt attatagcgt atcgtgtacg ctaatatctt agtgcaccgc
+     4741 acgctggttg gatacaattc cgtgaaataa ttcctgctta cacaggggct ttctggcgca
+     4801 tggctgtgtc tggatgtttg tgataagagg ctccatgaac ccggcgggaa atgaggggaa
+     4861 accccgggga gcaacgacac taagcctggc agttgttcag ataggacgct tttgtcagtg
+     4921 ggcggttttg catccactaa ctatcataaa cgacacaacg tcgaatgatc atcggcggtt
+     4981 tgcatgtaga gacagctcct gcaacaccat accggctcgt ggaattacgc tgtgcgccgg
+     5041 ccctcattcg attgtgtcca gcgtcggcgc gaatgatgat tgagatgtgc ttcggctcag
+     5101 agcgtgcaca ggtagttctc cccccttacc tagctgatcc agcaattcca cgctggcccg
+     5161 cgcgtccttg ggtaacactg gatctgtacc caaatacacc gtcgtgattg ttaactaccg
+     5221 tatggcggtt acgatcgagt gacactatta ttagaccgct actccaagtc ccaacttttc
+     5281 atcgccatac agaagagaac gagaaagtcg aagagttata gcgtgtacac ttctgattag
+     5341 ctaacgaatc gatgcgtaca gcatactcga gcaactttat gggtcgtctg tctccttgta
+     5401 ccccgcttga cgaggatgtg tttgtaggcg gcttggatat cggcagtgta tccgcatggt
+     5461 caaacacttt agcccgaccg gtgctcaagg tcgaaatcct aatatagatt gggataggac
+     5521 ccgtccatta ctaggcgaca ttcgcagtca cgagcccgca cggggtgcct caacacggtg
+     5581 acactcaatt cgccggcact gagtacgacg atcgtgattg ccataccgtc atgttttgtg
+     5641 ttacccctga taagaagcgc agatatggca cgggggcaga gggcggagta gacccatgca
+     5701 aaactctagc ctctgggcag catgatcgac gtagaacgcc gttgtgactc actagtttca
+     5761 gttatgatgt tcagccaaga atcctccatt ttgacgtgaa ccttctccct ttacaccttg
+     5821 aagctgcaat attaagtcga ccctttaagt tgccttgtct tggtctagag cccgcagctc
+     5881 accgataaaa tgagcagtca attttagcgg cggttgtcca ggttacatgc actttgggct
+     5941 ggaaccgcgt tacgtttgga gtacttagaa gtgtcgtagg cataggagag ccgaaacttg
+     6001 atattgggtc tagttagtgc tctaccccgc ttcggatccg taatagtgat gttgcatgag
+     6061 acgcttgcct caaggcgaca tacggtggcg gttgctggaa atgacgcccc accccgtgat
+     6121 aatttgggga cgagccgcac gataacttct gccagcgacc gcccctccca cgtccgatgg
+     6181 tgattccgaa ctccacctgc gtctatcgta cagtgctaaa atggcagcag atagtgaaac
+     6241 ttccgctaag ctagcccctc agggtacact gcaccgaggc gtgctgtcaa tacttgatta
+     6301 agtcgggttg tcggggacct gccgtcacgc ttccgagtgt atatccggat ttagttgacg
+     6361 tcatacagag gcactaagaa gaataaacgc ttacctccag caatcgtgta gtgtcaggtg
+     6421 tacgttctcc cttgcgccgt tcggcaagcg tccggtgtcg ggctgcaagg aataaatctt
+     6481 tatggaccag aggggcttgt ttcctcatat gggtgcgtgc acttatacga ttcaaaggtg
+     6541 gatatggccg cataacacgt agccaggcta tagtcccgcg gcctaattcc ttcgagtgcg
+     6601 ggtgcctgtt tttgtttttc ctttacgaca cgaaccgctc taacctgctc tatttcgcca
+     6661 cgttccagtg aacctcttag cctaccgccc acgtacggtg ggacgcgtcg agcagttaag
+     6721 gtactgtgga gaaatcgttc aatattagaa aacaggcggt gtacgaatta ctgtgtcccg
+     6781 gtgttgcccg tttaacggct gccgtggtca taccgtgagg caccacgagg ggatgctacg
+     6841 caacatgcga ggtgtaatca gcagggaaga tcccggggat cgaaagcggt ccgcgatttg
+     6901 cgaccgatat gcataaggtg tcatttatat tacacctacg acactggtac cggctcacag
+     6961 ccaaatgcac agtctcaaga tagaattcgc aaaaattagg cttatcgggc gcttactctt
+     7021 tgttacactt ctggtctgtg agtgacgccc tgtgtcccat cactgcatgt gaggatgcgt
+     7081 gtactgcacc tgtgaattac agacgtttcc ctaccagggc gctacgttat aatgttcggt
+     7141 tgcaaccctc tatagggtga tctcgacata ccactatggt ttgcgcgtct cgggtgcttt
+     7201 tggcgagggc caggtacggc ggtgagacag cgtattttgc gaatagggta ttcggacgca
+     7261 cggtgtatag ctcttggaaa acgactcttc gacgggcgtg tagaagtagc caagcagttc
+     7321 ggttgttatc actaaatgcg gaccatgtgc agccgtttag gagaggagtc tgcaatggat
+     7381 cagctggtca gattgtacca ctcggttgag cctaaggcac ttcaggtgct cggattgtaa
+     7441 tgaaccctca ggttacgccg ttgcgctgag atcccacaag ccataagcaa tgagaatcga
+     7501 gcagctatcg aattacgcag cacttgctga tgaactgggt gcacctaaag cgcccgataa
+     7561 aacggaggga gtgaggtaac tactacattg cgagtagtgc gaggggcctc cgagactaca
+     7621 ttagagcagc catgccgaat acgacaaaat ctatagcctt gcgaacgtag gggactgatt
+     7681 tatggacaac aggaccgaaa caagttggag ccacaacgga gctatggacg ttttcactat
+     7741 tgatgggtgg cttgcgtccg catcccaggt ttctctggtt aattttcatg acgattcttt
+     7801 gtggtacgat ccaggcataa gatagggcac ctaacccgat actgtgaact tatatgacgg
+     7861 ctgaacatgc cctaatagtc tgccaaaagg gaaacctata acggctctaa acgggccccg
+     7921 ggtacgtaac agcaatgttc ctgtccacca aggcgttttt agtaaccgcc gatcgatctc
+     7981 gatcgaattc cgttttacgc
+//
Binary file test-data/init/gibson_assembly_simulation/construct_2/construct_2.pdf has changed
Binary file test-data/init/gibson_assembly_simulation/construct_2/construct_2_connections_graph.pdf has changed
--- /dev/null	Thu Jan 01 00:00:00 1970 +0000
+++ b/test-data/init/gibson_assembly_simulation/construct_2/construct_2_summary.csv	Fri May 16 11:32:06 2025 +0000
@@ -0,0 +1,2 @@
+assembly_name,construct_id,assembly_level,construct_size,number_of_parts,depends_on,homology_condition,used_in,parts
+construct_2,construct_2,1,8000,5,,"15-80bp, 0.0-+C Tm",,Frag_2 & Frag_3 & Frag_4b & Frag_5 & Frag_1
--- /dev/null	Thu Jan 01 00:00:00 1970 +0000
+++ b/test-data/init/gibson_assembly_simulation/construct_2/provided_parts_records/Frag_1.gb	Fri May 16 11:32:06 2025 +0000
@@ -0,0 +1,42 @@
+LOCUS       Frag_1                  1810 bp    DNA     circular UNK 01-JAN-1980
+DEFINITION  Frag_1.
+ACCESSION   Frag_1
+VERSION     Frag_1
+KEYWORDS    .
+SOURCE      .
+  ORGANISM  .
+            .
+FEATURES             Location/Qualifiers
+ORIGIN
+        1 ctccacctgc gtctatcgta cagtgctaaa atggcagcag atagtgaaac ttccgctaag
+       61 ctagcccctc agggtacact gcaccgaggc gtgctgtcaa tacttgatta agtcgggttg
+      121 tcggggacct gccgtcacgc ttccgagtgt atatccggat ttagttgacg tcatacagag
+      181 gcactaagaa gaataaacgc ttacctccag caatcgtgta gtgtcaggtg tacgttctcc
+      241 cttgcgccgt tcggcaagcg tccggtgtcg ggctgcaagg aataaatctt tatggaccag
+      301 aggggcttgt ttcctcatat gggtgcgtgc acttatacga ttcaaaggtg gatatggccg
+      361 cataacacgt agccaggcta tagtcccgcg gcctaattcc ttcgagtgcg ggtgcctgtt
+      421 tttgtttttc ctttacgaca cgaaccgctc taacctgctc tatttcgcca cgttccagtg
+      481 aacctcttag cctaccgccc acgtacggtg ggacgcgtcg agcagttaag gtactgtgga
+      541 gaaatcgttc aatattagaa aacaggcggt gtacgaatta ctgtgtcccg gtgttgcccg
+      601 tttaacggct gccgtggtca taccgtgagg caccacgagg ggatgctacg caacatgcga
+      661 ggtgtaatca gcagggaaga tcccggggat cgaaagcggt ccgcgatttg cgaccgatat
+      721 gcataaggtg tcatttatat tacacctacg acactggtac cggctcacag ccaaatgcac
+      781 agtctcaaga tagaattcgc aaaaattagg cttatcgggc gcttactctt tgttacactt
+      841 ctggtctgtg agtgacgccc tgtgtcccat cactgcatgt gaggatgcgt gtactgcacc
+      901 tgtgaattac agacgtttcc ctaccagggc gctacgttat aatgttcggt tgcaaccctc
+      961 tatagggtga tctcgacata ccactatggt ttgcgcgtct cgggtgcttt tggcgagggc
+     1021 caggtacggc ggtgagacag cgtattttgc gaatagggta ttcggacgca cggtgtatag
+     1081 ctcttggaaa acgactcttc gacgggcgtg tagaagtagc caagcagttc ggttgttatc
+     1141 actaaatgcg gaccatgtgc agccgtttag gagaggagtc tgcaatggat cagctggtca
+     1201 gattgtacca ctcggttgag cctaaggcac ttcaggtgct cggattgtaa tgaaccctca
+     1261 ggttacgccg ttgcgctgag atcccacaag ccataagcaa tgagaatcga gcagctatcg
+     1321 aattacgcag cacttgctga tgaactgggt gcacctaaag cgcccgataa aacggaggga
+     1381 gtgaggtaac tactacattg cgagtagtgc gaggggcctc cgagactaca ttagagcagc
+     1441 catgccgaat acgacaaaat ctatagcctt gcgaacgtag gggactgatt tatggacaac
+     1501 aggaccgaaa caagttggag ccacaacgga gctatggacg ttttcactat tgatgggtgg
+     1561 cttgcgtccg catcccaggt ttctctggtt aattttcatg acgattcttt gtggtacgat
+     1621 ccaggcataa gatagggcac ctaacccgat actgtgaact tatatgacgg ctgaacatgc
+     1681 cctaatagtc tgccaaaagg gaaacctata acggctctaa acgggccccg ggtacgtaac
+     1741 agcaatgttc ctgtccacca aggcgttttt agtaaccgcc gatcgatctc gatcgaattc
+     1801 cgttttacgc
+//
--- /dev/null	Thu Jan 01 00:00:00 1970 +0000
+++ b/test-data/init/gibson_assembly_simulation/construct_2/provided_parts_records/Frag_2.gb	Fri May 16 11:32:06 2025 +0000
@@ -0,0 +1,42 @@
+LOCUS       Frag_2                  1820 bp    DNA     circular UNK 01-JAN-1980
+DEFINITION  Frag_2.
+ACCESSION   Frag_2
+VERSION     Frag_2
+KEYWORDS    .
+SOURCE      .
+  ORGANISM  .
+            .
+FEATURES             Location/Qualifiers
+ORIGIN
+        1 gatcgaattc cgttttacgc cccagatcgc agctcccttg acagtgtcag ttgaatcccc
+       61 attctaggtt tcctgataaa actaagtacg gggacgcatc agtcgaaagc aatcacagat
+      121 aatagatatc ttgagcagaa agacgtcttc acgaatcagg agcgagtgtc ccctttgaaa
+      181 gtgcgggcaa caataggtgt gaggtttcac ggttgcttga tcagtagctg ttcactctct
+      241 cgcaggccta catagtgagg tggtgagatt gttcaggtct gtctcctgcg cggttgtcga
+      301 gccccgtcgg gcacgctaac aaggacagga attcgggtcg tcaaataaca atttacgtca
+      361 tcgcatccct caagggtaag gcgtgatctc catctcggtt cccaattggt cattgtgata
+      421 gccacactgc agttaccgaa ggcgatttta tactaccctg ataagtgctc gcagcccctc
+      481 ctccctaata atgtaacgac gagcattaac ccaggagtat ttctcacgtt gctcgtgccc
+      541 agccaaggcg atcaacgcag accggatagc gttagctagc ccacgggtaa aagcgattgt
+      601 tgtactcttt catatgaata cagcactcgc gaatgcaagc ctacgtcggc tcgattctct
+      661 tcctcaccac actggaggcg atgatctagc ccgtctttca ccccgtacct ttatactcgg
+      721 ccgcgtattt ctccaccggg agctctgcct accaaagcgt cgtacgccca ggaagccgtt
+      781 tcctttatcc tccctcatgt ctcaacgcgc gagcatcgga gagtacgcga aatcgactgt
+      841 ctggccaaca ctggacagac gcgcgagacg ctgataaacc cccattttcg tggggttagt
+      901 aaatcggtgg cttcaaacgg ttcgatcgct cgcacgagca ttagtcagga gtatgattgc
+      961 gcatcatctc tactccgtac taggttctgt agctcaggat ctccgggggg atcaagcttt
+     1021 tatgtcccgc gggattagaa gatatccatc catatgttta ctttgatgcg ggtccgagct
+     1081 ctctatgatg ctgctttgac aaaatgtgga aagcctcagc gaccgctctg gggtcaaagc
+     1141 tctacgacac gttgatgcta aacaagttgg actactaagc aaatgaagcg gaagagatac
+     1201 tgagcgctct ctctatgact ttcgctatat ggcgacgtgc gaaaaacgcg atttggccga
+     1261 aatctcaaat aataatgcaa tgtgttggct aagctcgggc aaactcagga tgtgacctag
+     1321 taccctctgc cccgtgagta cccataccca atcaagccag cccaattcgc gataggtaca
+     1381 gataagcctt actcgtcccg atccttgact aaaacactca tcctcgatag tacgtgcctt
+     1441 gtagagtccg acggccatag gtaaacgacc agttagtgtc gtagggtcct ccactttagc
+     1501 tacgattgca actcccttac cttcgtgccg gcgcgctcct cttgctacca tcacgcttca
+     1561 aatcgggtgg aagaccaact gatgaatgag ggtgcagacc ccagtggagc ataatacgat
+     1621 gcgcccacga tactctagag ccacgcgtcg acgttcgtaa gatgtcccgg gcccgtgggt
+     1681 ggccacatcg gccgcccatc cttgtgtctt ccgataagta ctccctttca aggactctcc
+     1741 gataccggct tagaacacga acggacaacg ctttcagcgc tgagaaatga cggctgcttc
+     1801 aaccagaacg atacagcctt
+//
--- /dev/null	Thu Jan 01 00:00:00 1970 +0000
+++ b/test-data/init/gibson_assembly_simulation/construct_2/provided_parts_records/Frag_3.gb	Fri May 16 11:32:06 2025 +0000
@@ -0,0 +1,42 @@
+LOCUS       Frag_3                  1819 bp    DNA     circular UNK 01-JAN-1980
+DEFINITION  Frag_3.
+ACCESSION   Frag_3
+VERSION     Frag_3
+KEYWORDS    .
+SOURCE      .
+  ORGANISM  .
+            .
+FEATURES             Location/Qualifiers
+ORIGIN
+        1 aaccagaacg atacagcctt ctttgctaga tagcctctag tgtcagccac caagtccgcc
+       61 acctaatcct tcgccgaggg tcaaagcttc tgaccatcca attgttaggc actcttggaa
+      121 ccttgcaagt acctgatcat gcagaaaatg gacttgcccg gagcatattc attataagta
+      181 ccattcacgg caggttatag tatgcgttga cgcggggtga tacggtaatg caagtaacca
+      241 tcgggccgcg gtatgcacat agaagggtgt ttgacttggt ttcttacagt gcaactgcat
+      301 atgtggaccg ccattccaag tgaaaggata cgaagggagg tttcggactg ctatccagag
+      361 catggaaagc cttcaaggtg gtgcgcactg gaatagtgac tcggggattg tatgtcgagc
+      421 cgcgtccagt ctttcctata cttatgcgag caaatagacc gagtggaact tgattgcatc
+      481 agccgaatca cgatgaaaac tcagcttaca attcgtaagc acttcaaata tatgcccgga
+      541 aaatcgccgt ccagtgactt gtaatagctc cagggtcagt agcgctgccc tggccgaacc
+      601 aggtgacggt tacgtggacc tcacagtatc aatgttgcag tgcgccacca gattaagctg
+      661 gccgtgtcat ggtgaacaac cgtgataaaa gaacgggagt atgagagtgc cacccaagag
+      721 tggtactcca ggattcggaa aggggagggg gcttttcctg cttaacaacc ttcctcggca
+      781 cggtctaagc gtctcactcg tcctaaactc taccatcatg cagctaggcg aaagtataac
+      841 tttagggtct atcaggatga gctatctgta ccacggtgat gagataagta gggggtgcgc
+      901 tagggtcgtt cgtgttttca tcgtctatag tacctatttc tcgtcttcca ttagcgcata
+      961 cggccatctc gcggcggcta cgtcagccag cgtcaacccc aagtcactaa tttccgttat
+     1021 tataggtgta gctcataact tcttctgccg accaagccaa aagctttgcg gcagctgcaa
+     1081 ggccacgtta ggctctcgga cggcagatat ttattaataa caccactggg ttccagctct
+     1141 taacgcactt cccttcactg gatcacctgt acgcccataa gctaagcctg aagccacggc
+     1201 ctcaatcgtg gacattactc ttagcaaatc cacattacca tgtcaccaat ccccgaaccc
+     1261 cgcgccgacc taaggcgggg tacctcgtgc acggcagcat cgagggaaat atattacaaa
+     1321 agacgcggcg atccaacggt tgataaaaac agttccgtgg aaggcggacg tgtgcttagc
+     1381 gcatgcttct caccgagtga cagcaccgat tccatctcgc tagcacgccg atgagcctcg
+     1441 ctgtgggact atggtccagc ctatgcttaa ctaggcagaa cagagagtat ggtggtcctc
+     1501 ggtaaggtcg atttggtggc actcgcaaga tacgcgggtt attagtagag cgcagtcagg
+     1561 gcccatcgcc agcatttgca tgctcgccgt acgctatcct tgtactacgg ttcctcagtg
+     1621 gctataaagg aatgtcacaa ctccattagc cccttttgtt cagcgcttag tcatggtggg
+     1681 actgactcac cgagactaca tacggattgt gcccgcagag acatgccttt catgctgggg
+     1741 ttttgtaagc agctccacgg ggtagtgtca ccatgccttc gacctatgct tatgaaaccc
+     1801 gaggtaatgc ggcaggatc
+//
--- /dev/null	Thu Jan 01 00:00:00 1970 +0000
+++ b/test-data/init/gibson_assembly_simulation/construct_2/provided_parts_records/Frag_4b.gb	Fri May 16 11:32:06 2025 +0000
@@ -0,0 +1,32 @@
+LOCUS       Frag_4b                 1218 bp    DNA     circular UNK 01-JAN-1980
+DEFINITION  Frag_4b.
+ACCESSION   Frag_4b
+VERSION     Frag_4b
+KEYWORDS    .
+SOURCE      .
+  ORGANISM  .
+            .
+FEATURES             Location/Qualifiers
+ORIGIN
+        1 aggtaatgcg gcaggatccc gtggatccta cgcttagcct gttacccccc ccgttctcct
+       61 cggcccccag ccagcgcgta ttccgcgcat tcctccgagt gcgtatcgcg caaaccacaa
+      121 gatacctctc aacgactagc ggtgaaccac caagcttgac atacgtgccc cttcggaaac
+      181 gttattagtg gtcctgagtg gtacgtcccg agtatacggg gcagcgatag taacgctaca
+      241 aatagctaga ccgacgacaa acacagcact gaatatccaa cagtggcaac gagacgctta
+      301 gaaagggaaa ctacatacca gttcaatccg ggatgacttc aaaagggtat gtttgttttg
+      361 aagcgaagct ttggttgtca ttcagttcct agagtttacg gcgctgatat ggctctagga
+      421 gtccagtgaa ttcgtcagca taagccccac atcgtaggaa attgcccggt cgtcggtcta
+      481 gcaaatgctc ggtaaactgg gagtgtacta acaccatgtc gtggtaaccc ggtggaccgg
+      541 ctactagaga catatttatt catgctcagt tgaacctgtt tcgagggggc cgagttaaca
+      601 taaagtgatt agtcacagcg cattaagata gaacagggat atagctcgtt gcatccataa
+      661 attgcccacc gtagggagaa cgccgttgga aaatgagagt taggcgatga gcggttgtcg
+      721 cccgcacaga caaaggatgc ctttataaat agtagcggcc ttgtctgcac cagacgtttg
+      781 tgggtcgacg tgctattcta gccaaaagca aaatgtatca tactacaggc aataggccct
+      841 atgctgacca aacttgggga cccttgcgcc ttctctctta cgcataacat gcataggtac
+      901 ctctactcat caggcagggc ggcgtgaggt cactatggct caagatgtgt acgactaaag
+      961 aaaggtttat gctccttccc caaggacgca tttgggactg ctacttgccc ctagcgaatt
+     1021 cactaggatt tttgtagaac catgagcgcc ctatccgata gcacagagac aatgctacaa
+     1081 gcaactgtgc atgcgctcga tcgccgtgca ttaatacgta ttatagcgta tcgtgtacgc
+     1141 taatatctta gtgcaccgca cgctggttgg atacaattcc gtgaaataat tcctgcttac
+     1201 acaggggctt tctggcgc
+//
--- /dev/null	Thu Jan 01 00:00:00 1970 +0000
+++ b/test-data/init/gibson_assembly_simulation/construct_2/provided_parts_records/Frag_5.gb	Fri May 16 11:32:06 2025 +0000
@@ -0,0 +1,35 @@
+LOCUS       Frag_5                  1428 bp    DNA     circular UNK 01-JAN-1980
+DEFINITION  Frag_5.
+ACCESSION   Frag_5
+VERSION     Frag_5
+KEYWORDS    .
+SOURCE      .
+  ORGANISM  .
+            .
+FEATURES             Location/Qualifiers
+ORIGIN
+        1 acaggggctt tctggcgcat ggctgtgtct ggatgtttgt gataagaggc tccatgaacc
+       61 cggcgggaaa tgaggggaaa ccccggggag caacgacact aagcctggca gttgttcaga
+      121 taggacgctt ttgtcagtgg gcggttttgc atccactaac tatcataaac gacacaacgt
+      181 cgaatgatca tcggcggttt gcatgtagag acagctcctg caacaccata ccggctcgtg
+      241 gaattacgct gtgcgccggc cctcattcga ttgtgtccag cgtcggcgcg aatgatgatt
+      301 gagatgtgct tcggctcaga gcgtgcacag gtagttctcc ccccttacct agctgatcca
+      361 gcaattccac gctggcccgc gcgtccttgg gtaacactgg atctgtaccc aaatacaccg
+      421 tcgtgattgt taactaccgt atggcggtta cgatcgagtg acactattat tagaccgcta
+      481 ctccaagtcc caacttttca tcgccataca gaagagaacg agaaagtcga agagttatag
+      541 cgtgtacact tctgattagc taacgaatcg atgcgtacag catactcgag caactttatg
+      601 ggtcgtctgt ctccttgtac cccgcttgac gaggatgtgt ttgtaggcgg cttggatatc
+      661 ggcagtgtat ccgcatggtc aaacacttta gcccgaccgg tgctcaaggt cgaaatccta
+      721 atatagattg ggataggacc cgtccattac taggcgacat tcgcagtcac gagcccgcac
+      781 ggggtgcctc aacacggtga cactcaattc gccggcactg agtacgacga tcgtgattgc
+      841 cataccgtca tgttttgtgt tacccctgat aagaagcgca gatatggcac gggggcagag
+      901 ggcggagtag acccatgcaa aactctagcc tctgggcagc atgatcgacg tagaacgccg
+      961 ttgtgactca ctagtttcag ttatgatgtt cagccaagaa tcctccattt tgacgtgaac
+     1021 cttctccctt tacaccttga agctgcaata ttaagtcgac cctttaagtt gccttgtctt
+     1081 ggtctagagc ccgcagctca ccgataaaat gagcagtcaa ttttagcggc ggttgtccag
+     1141 gttacatgca ctttgggctg gaaccgcgtt acgtttggag tacttagaag tgtcgtaggc
+     1201 ataggagagc cgaaacttga tattgggtct agttagtgct ctaccccgct tcggatccgt
+     1261 aatagtgatg ttgcatgaga cgcttgcctc aaggcgacat acggtggcgg ttgctggaaa
+     1321 tgacgcccca ccccgtgata atttggggac gagccgcacg ataacttctg ccagcgaccg
+     1381 cccctcccac gtccgatggt gattccgaac tccacctgcg tctatcgt
+//
--- /dev/null	Thu Jan 01 00:00:00 1970 +0000
+++ b/test-data/init/gibson_assembly_simulation/construct_3/construct_3.gb	Fri May 16 11:32:06 2025 +0000
@@ -0,0 +1,191 @@
+LOCUS       construct_3             8000 bp    DNA     circular UNK 01-JAN-1980
+DEFINITION  .
+ACCESSION   construct_3
+VERSION     construct_3
+KEYWORDS    .
+SOURCE      .
+  ORGANISM  .
+            .
+FEATURES             Location/Qualifiers
+     homology        1781..1800
+                     /label="homology"
+                     /color="#f7e8f7"
+                     /ApEinfo_fwdcolor="#f7e8f7"
+     misc_feature    1781..3581
+                     /source="Frag_3"
+                     /indicates_part=True
+                     /note="From Frag_3"
+                     /color="white"
+                     /ApEinfo_fwdcolor="white"
+     homology        3582..3599
+                     /label="homology"
+                     /color="#f7e8f7"
+                     /ApEinfo_fwdcolor="#f7e8f7"
+     misc_feature    3582..4781
+                     /source="Frag_4c"
+                     /indicates_part=True
+                     /note="From Frag_4c"
+                     /color="white"
+                     /ApEinfo_fwdcolor="white"
+     homology        4782..4799
+                     /label="homology"
+                     /color="#f7e8f7"
+                     /ApEinfo_fwdcolor="#f7e8f7"
+     misc_feature    4782..6190
+                     /source="Frag_5b"
+                     /indicates_part=True
+                     /note="From Frag_5b"
+                     /color="white"
+                     /ApEinfo_fwdcolor="white"
+     misc_feature    6191..8000
+                     /source="Frag_1"
+                     /indicates_part=True
+                     /note="From Frag_1"
+                     /color="white"
+                     /ApEinfo_fwdcolor="white"
+     homology        6191..6209
+                     /label="homology"
+                     /color="#f7e8f7"
+                     /ApEinfo_fwdcolor="#f7e8f7"
+     misc_feature    8021..9800
+                     /source="Frag_2"
+                     /indicates_part=True
+                     /note="From Frag_2"
+                     /color="white"
+                     /ApEinfo_fwdcolor="white"
+ORIGIN
+        1 cccagatcgc agctcccttg acagtgtcag ttgaatcccc attctaggtt tcctgataaa
+       61 actaagtacg gggacgcatc agtcgaaagc aatcacagat aatagatatc ttgagcagaa
+      121 agacgtcttc acgaatcagg agcgagtgtc ccctttgaaa gtgcgggcaa caataggtgt
+      181 gaggtttcac ggttgcttga tcagtagctg ttcactctct cgcaggccta catagtgagg
+      241 tggtgagatt gttcaggtct gtctcctgcg cggttgtcga gccccgtcgg gcacgctaac
+      301 aaggacagga attcgggtcg tcaaataaca atttacgtca tcgcatccct caagggtaag
+      361 gcgtgatctc catctcggtt cccaattggt cattgtgata gccacactgc agttaccgaa
+      421 ggcgatttta tactaccctg ataagtgctc gcagcccctc ctccctaata atgtaacgac
+      481 gagcattaac ccaggagtat ttctcacgtt gctcgtgccc agccaaggcg atcaacgcag
+      541 accggatagc gttagctagc ccacgggtaa aagcgattgt tgtactcttt catatgaata
+      601 cagcactcgc gaatgcaagc ctacgtcggc tcgattctct tcctcaccac actggaggcg
+      661 atgatctagc ccgtctttca ccccgtacct ttatactcgg ccgcgtattt ctccaccggg
+      721 agctctgcct accaaagcgt cgtacgccca ggaagccgtt tcctttatcc tccctcatgt
+      781 ctcaacgcgc gagcatcgga gagtacgcga aatcgactgt ctggccaaca ctggacagac
+      841 gcgcgagacg ctgataaacc cccattttcg tggggttagt aaatcggtgg cttcaaacgg
+      901 ttcgatcgct cgcacgagca ttagtcagga gtatgattgc gcatcatctc tactccgtac
+      961 taggttctgt agctcaggat ctccgggggg atcaagcttt tatgtcccgc gggattagaa
+     1021 gatatccatc catatgttta ctttgatgcg ggtccgagct ctctatgatg ctgctttgac
+     1081 aaaatgtgga aagcctcagc gaccgctctg gggtcaaagc tctacgacac gttgatgcta
+     1141 aacaagttgg actactaagc aaatgaagcg gaagagatac tgagcgctct ctctatgact
+     1201 ttcgctatat ggcgacgtgc gaaaaacgcg atttggccga aatctcaaat aataatgcaa
+     1261 tgtgttggct aagctcgggc aaactcagga tgtgacctag taccctctgc cccgtgagta
+     1321 cccataccca atcaagccag cccaattcgc gataggtaca gataagcctt actcgtcccg
+     1381 atccttgact aaaacactca tcctcgatag tacgtgcctt gtagagtccg acggccatag
+     1441 gtaaacgacc agttagtgtc gtagggtcct ccactttagc tacgattgca actcccttac
+     1501 cttcgtgccg gcgcgctcct cttgctacca tcacgcttca aatcgggtgg aagaccaact
+     1561 gatgaatgag ggtgcagacc ccagtggagc ataatacgat gcgcccacga tactctagag
+     1621 ccacgcgtcg acgttcgtaa gatgtcccgg gcccgtgggt ggccacatcg gccgcccatc
+     1681 cttgtgtctt ccgataagta ctccctttca aggactctcc gataccggct tagaacacga
+     1741 acggacaacg ctttcagcgc tgagaaatga cggctgcttc aaccagaacg atacagcctt
+     1801 ctttgctaga tagcctctag tgtcagccac caagtccgcc acctaatcct tcgccgaggg
+     1861 tcaaagcttc tgaccatcca attgttaggc actcttggaa ccttgcaagt acctgatcat
+     1921 gcagaaaatg gacttgcccg gagcatattc attataagta ccattcacgg caggttatag
+     1981 tatgcgttga cgcggggtga tacggtaatg caagtaacca tcgggccgcg gtatgcacat
+     2041 agaagggtgt ttgacttggt ttcttacagt gcaactgcat atgtggaccg ccattccaag
+     2101 tgaaaggata cgaagggagg tttcggactg ctatccagag catggaaagc cttcaaggtg
+     2161 gtgcgcactg gaatagtgac tcggggattg tatgtcgagc cgcgtccagt ctttcctata
+     2221 cttatgcgag caaatagacc gagtggaact tgattgcatc agccgaatca cgatgaaaac
+     2281 tcagcttaca attcgtaagc acttcaaata tatgcccgga aaatcgccgt ccagtgactt
+     2341 gtaatagctc cagggtcagt agcgctgccc tggccgaacc aggtgacggt tacgtggacc
+     2401 tcacagtatc aatgttgcag tgcgccacca gattaagctg gccgtgtcat ggtgaacaac
+     2461 cgtgataaaa gaacgggagt atgagagtgc cacccaagag tggtactcca ggattcggaa
+     2521 aggggagggg gcttttcctg cttaacaacc ttcctcggca cggtctaagc gtctcactcg
+     2581 tcctaaactc taccatcatg cagctaggcg aaagtataac tttagggtct atcaggatga
+     2641 gctatctgta ccacggtgat gagataagta gggggtgcgc tagggtcgtt cgtgttttca
+     2701 tcgtctatag tacctatttc tcgtcttcca ttagcgcata cggccatctc gcggcggcta
+     2761 cgtcagccag cgtcaacccc aagtcactaa tttccgttat tataggtgta gctcataact
+     2821 tcttctgccg accaagccaa aagctttgcg gcagctgcaa ggccacgtta ggctctcgga
+     2881 cggcagatat ttattaataa caccactggg ttccagctct taacgcactt cccttcactg
+     2941 gatcacctgt acgcccataa gctaagcctg aagccacggc ctcaatcgtg gacattactc
+     3001 ttagcaaatc cacattacca tgtcaccaat ccccgaaccc cgcgccgacc taaggcgggg
+     3061 tacctcgtgc acggcagcat cgagggaaat atattacaaa agacgcggcg atccaacggt
+     3121 tgataaaaac agttccgtgg aaggcggacg tgtgcttagc gcatgcttct caccgagtga
+     3181 cagcaccgat tccatctcgc tagcacgccg atgagcctcg ctgtgggact atggtccagc
+     3241 ctatgcttaa ctaggcagaa cagagagtat ggtggtcctc ggtaaggtcg atttggtggc
+     3301 actcgcaaga tacgcgggtt attagtagag cgcagtcagg gcccatcgcc agcatttgca
+     3361 tgctcgccgt acgctatcct tgtactacgg ttcctcagtg gctataaagg aatgtcacaa
+     3421 ctccattagc cccttttgtt cagcgcttag tcatggtggg actgactcac cgagactaca
+     3481 tacggattgt gcccgcagag acatgccttt catgctgggg ttttgtaagc agctccacgg
+     3541 ggtagtgtca ccatgccttc gacctatgct tatgaaaccc gaggtaatgc ggcaggatcc
+     3601 cgtggatcct acgcttagcc tgttaggggg ggggttctcc tcggccccca gccagcgcgt
+     3661 attccgcgca ttcctccgag tgcgtatcgc gcaaaccaca agatacctct caacgactag
+     3721 cggtgaacca ccaagcttga catacgtgcc ccttcggaaa cgttattagt ggtcctgagt
+     3781 ggtacgtccc gagtatacgg ggcagcgata gtaacgctac aaatagctag accgacgaca
+     3841 aacacagcac tgaatatcca acagtggcaa cgagacgctt agaaagggaa actacatacc
+     3901 agttcaatcc gggatgactt caaaagggta tgtttgtttt gaagcgaagc tttggttgtc
+     3961 attcagttcc tagagtttac ggcgctgata tggctctagg agtccagtga attcgtcagc
+     4021 ataagcccca catcgtagga aattgcccgg tcgtcggtct agcaaatgct cggtaaactg
+     4081 ggagtgtact aacaccatgt cgtggtaacc cggtggaccg gctactagag acatatttat
+     4141 tcatgctcag ttgaacctgt ttcgaggggg ccgagttaac ataaagtgat tagtcacagc
+     4201 gcattaagat agaacaggga tatagctcgt tgcatccata aattgcccac cgtagggaga
+     4261 acgccgttgg aaaatgagag ttaggcgatg agcggttgtc gcccgcacag acaaaggatg
+     4321 cctttataaa tagtagcggc cttgtctgca ccagacgttt gtgggtcgac gtgctattct
+     4381 agccaaaagc aaaatgtatc atactacagg caataggccc tatgctgacc aaacttgggg
+     4441 acccttgcgc cttctctctt acgcataaca tgcataggta cctctactca tcaggcaggg
+     4501 cggcgtgagg tcactatggc tcaagatgtg tacgactaaa gaaaggttta tgctccttcc
+     4561 ccaaggacgc atttgggact gctacttgcc cctagcgaat tcactaggat ttttgtagaa
+     4621 ccatgagcgc cctatccgat agcacagaga caatgctaca agcaactgtg catgcgctcg
+     4681 atcgccgtgc attaatacgt attatagcgt atcgtgtacg ctaatatctt agtgcaccgc
+     4741 acgctggttg gatacaattc cgtgaaataa ttcctgctta cacaggggct ttctggcgca
+     4801 tggctgtgtc tggaaaaaaa aaaaaaaaaa aaacatgaac ccggcgggaa atgaggggaa
+     4861 accccgggga gcaacgacac taagcctggc agttgttcag ataggacgct tttgtcagtg
+     4921 ggcggttttg catccactaa ctatcataaa cgacacaacg tcgaatgatc atcggcggtt
+     4981 tgcatgtaga gacagctcct gcaacaccat accggctcgt ggaattacgc tgtgcgccgg
+     5041 ccctcattcg attgtgtcca gcgtcggcgc gaatgatgat tgagatgtgc ttcggctcag
+     5101 agcgtgcaca ggtagttctc cccccttacc tagctgatcc agcaattcca cgctggcccg
+     5161 cgcgtccttg ggtaacactg gatctgtacc caaatacacc gtcgtgattg ttaactaccg
+     5221 tatggcggtt acgatcgagt gacactatta ttagaccgct actccaagtc ccaacttttc
+     5281 atcgccatac agaagagaac gagaaagtcg aagagttata gcgtgtacac ttctgattag
+     5341 ctaacgaatc gatgcgtaca gcatactcga gcaactttat gggtcgtctg tctccttgta
+     5401 ccccgcttga cgaggatgtg tttgtaggcg gcttggatat cggcagtgta tccgcatggt
+     5461 caaacacttt agcccgaccg gtgctcaagg tcgaaatcct aatatagatt gggataggac
+     5521 ccgtccatta ctaggcgaca ttcgcagtca cgagcccgca cggggtgcct caacacggtg
+     5581 acactcaatt cgccggcact gagtacgacg atcgtgattg ccataccgtc atgttttgtg
+     5641 ttacccctga taagaagcgc agatatggca cgggggcaga gggcggagta gacccatgca
+     5701 aaactctagc ctctgggcag catgatcgac gtagaacgcc gttgtgactc actagtttca
+     5761 gttatgatgt tcagccaaga atcctccatt ttgacgtgaa ccttctccct ttacaccttg
+     5821 aagctgcaat attaagtcga ccctttaagt tgccttgtct tggtctagag cccgcagctc
+     5881 accgataaaa tgagcagtca attttagcgg cggttgtcca ggttacatgc actttgggct
+     5941 ggaaccgcgt tacgtttgga gtacttagaa gtgtcgtagg cataggagag ccgaaacttg
+     6001 atattgggtc tagttagtgc tctaccccgc ttcggatccg taatagtgat gttgcatgag
+     6061 acgcttgcct caaggcgaca tacggtggcg gttgctggaa atgacgcccc accccgtgat
+     6121 aatttgggga cgagccgcac gataacttct gccagcgacc gcccctccca cgtccgatgg
+     6181 tgattccgaa ctccacctgc gtctatcgta cagtgctaaa atggcagcag atagtgaaac
+     6241 ttccgctaag ctagcccctc agggtacact gcaccgaggc gtgctgtcaa tacttgatta
+     6301 agtcgggttg tcggggacct gccgtcacgc ttccgagtgt atatccggat ttagttgacg
+     6361 tcatacagag gcactaagaa gaataaacgc ttacctccag caatcgtgta gtgtcaggtg
+     6421 tacgttctcc cttgcgccgt tcggcaagcg tccggtgtcg ggctgcaagg aataaatctt
+     6481 tatggaccag aggggcttgt ttcctcatat gggtgcgtgc acttatacga ttcaaaggtg
+     6541 gatatggccg cataacacgt agccaggcta tagtcccgcg gcctaattcc ttcgagtgcg
+     6601 ggtgcctgtt tttgtttttc ctttacgaca cgaaccgctc taacctgctc tatttcgcca
+     6661 cgttccagtg aacctcttag cctaccgccc acgtacggtg ggacgcgtcg agcagttaag
+     6721 gtactgtgga gaaatcgttc aatattagaa aacaggcggt gtacgaatta ctgtgtcccg
+     6781 gtgttgcccg tttaacggct gccgtggtca taccgtgagg caccacgagg ggatgctacg
+     6841 caacatgcga ggtgtaatca gcagggaaga tcccggggat cgaaagcggt ccgcgatttg
+     6901 cgaccgatat gcataaggtg tcatttatat tacacctacg acactggtac cggctcacag
+     6961 ccaaatgcac agtctcaaga tagaattcgc aaaaattagg cttatcgggc gcttactctt
+     7021 tgttacactt ctggtctgtg agtgacgccc tgtgtcccat cactgcatgt gaggatgcgt
+     7081 gtactgcacc tgtgaattac agacgtttcc ctaccagggc gctacgttat aatgttcggt
+     7141 tgcaaccctc tatagggtga tctcgacata ccactatggt ttgcgcgtct cgggtgcttt
+     7201 tggcgagggc caggtacggc ggtgagacag cgtattttgc gaatagggta ttcggacgca
+     7261 cggtgtatag ctcttggaaa acgactcttc gacgggcgtg tagaagtagc caagcagttc
+     7321 ggttgttatc actaaatgcg gaccatgtgc agccgtttag gagaggagtc tgcaatggat
+     7381 cagctggtca gattgtacca ctcggttgag cctaaggcac ttcaggtgct cggattgtaa
+     7441 tgaaccctca ggttacgccg ttgcgctgag atcccacaag ccataagcaa tgagaatcga
+     7501 gcagctatcg aattacgcag cacttgctga tgaactgggt gcacctaaag cgcccgataa
+     7561 aacggaggga gtgaggtaac tactacattg cgagtagtgc gaggggcctc cgagactaca
+     7621 ttagagcagc catgccgaat acgacaaaat ctatagcctt gcgaacgtag gggactgatt
+     7681 tatggacaac aggaccgaaa caagttggag ccacaacgga gctatggacg ttttcactat
+     7741 tgatgggtgg cttgcgtccg catcccaggt ttctctggtt aattttcatg acgattcttt
+     7801 gtggtacgat ccaggcataa gatagggcac ctaacccgat actgtgaact tatatgacgg
+     7861 ctgaacatgc cctaatagtc tgccaaaagg gaaacctata acggctctaa acgggccccg
+     7921 ggtacgtaac agcaatgttc ctgtccacca aggcgttttt agtaaccgcc gatcgatctc
+     7981 gatcgaattc cgttttacgc
+//
Binary file test-data/init/gibson_assembly_simulation/construct_3/construct_3.pdf has changed
Binary file test-data/init/gibson_assembly_simulation/construct_3/construct_3_connections_graph.pdf has changed
--- /dev/null	Thu Jan 01 00:00:00 1970 +0000
+++ b/test-data/init/gibson_assembly_simulation/construct_3/construct_3_summary.csv	Fri May 16 11:32:06 2025 +0000
@@ -0,0 +1,2 @@
+assembly_name,construct_id,assembly_level,construct_size,number_of_parts,depends_on,homology_condition,used_in,parts
+construct_3,construct_3,1,8000,5,,"15-80bp, 0.0-+C Tm",,Frag_2 & Frag_3 & Frag_4c & Frag_5b & Frag_1
--- /dev/null	Thu Jan 01 00:00:00 1970 +0000
+++ b/test-data/init/gibson_assembly_simulation/construct_3/provided_parts_records/Frag_1.gb	Fri May 16 11:32:06 2025 +0000
@@ -0,0 +1,42 @@
+LOCUS       Frag_1                  1810 bp    DNA     circular UNK 01-JAN-1980
+DEFINITION  Frag_1.
+ACCESSION   Frag_1
+VERSION     Frag_1
+KEYWORDS    .
+SOURCE      .
+  ORGANISM  .
+            .
+FEATURES             Location/Qualifiers
+ORIGIN
+        1 ctccacctgc gtctatcgta cagtgctaaa atggcagcag atagtgaaac ttccgctaag
+       61 ctagcccctc agggtacact gcaccgaggc gtgctgtcaa tacttgatta agtcgggttg
+      121 tcggggacct gccgtcacgc ttccgagtgt atatccggat ttagttgacg tcatacagag
+      181 gcactaagaa gaataaacgc ttacctccag caatcgtgta gtgtcaggtg tacgttctcc
+      241 cttgcgccgt tcggcaagcg tccggtgtcg ggctgcaagg aataaatctt tatggaccag
+      301 aggggcttgt ttcctcatat gggtgcgtgc acttatacga ttcaaaggtg gatatggccg
+      361 cataacacgt agccaggcta tagtcccgcg gcctaattcc ttcgagtgcg ggtgcctgtt
+      421 tttgtttttc ctttacgaca cgaaccgctc taacctgctc tatttcgcca cgttccagtg
+      481 aacctcttag cctaccgccc acgtacggtg ggacgcgtcg agcagttaag gtactgtgga
+      541 gaaatcgttc aatattagaa aacaggcggt gtacgaatta ctgtgtcccg gtgttgcccg
+      601 tttaacggct gccgtggtca taccgtgagg caccacgagg ggatgctacg caacatgcga
+      661 ggtgtaatca gcagggaaga tcccggggat cgaaagcggt ccgcgatttg cgaccgatat
+      721 gcataaggtg tcatttatat tacacctacg acactggtac cggctcacag ccaaatgcac
+      781 agtctcaaga tagaattcgc aaaaattagg cttatcgggc gcttactctt tgttacactt
+      841 ctggtctgtg agtgacgccc tgtgtcccat cactgcatgt gaggatgcgt gtactgcacc
+      901 tgtgaattac agacgtttcc ctaccagggc gctacgttat aatgttcggt tgcaaccctc
+      961 tatagggtga tctcgacata ccactatggt ttgcgcgtct cgggtgcttt tggcgagggc
+     1021 caggtacggc ggtgagacag cgtattttgc gaatagggta ttcggacgca cggtgtatag
+     1081 ctcttggaaa acgactcttc gacgggcgtg tagaagtagc caagcagttc ggttgttatc
+     1141 actaaatgcg gaccatgtgc agccgtttag gagaggagtc tgcaatggat cagctggtca
+     1201 gattgtacca ctcggttgag cctaaggcac ttcaggtgct cggattgtaa tgaaccctca
+     1261 ggttacgccg ttgcgctgag atcccacaag ccataagcaa tgagaatcga gcagctatcg
+     1321 aattacgcag cacttgctga tgaactgggt gcacctaaag cgcccgataa aacggaggga
+     1381 gtgaggtaac tactacattg cgagtagtgc gaggggcctc cgagactaca ttagagcagc
+     1441 catgccgaat acgacaaaat ctatagcctt gcgaacgtag gggactgatt tatggacaac
+     1501 aggaccgaaa caagttggag ccacaacgga gctatggacg ttttcactat tgatgggtgg
+     1561 cttgcgtccg catcccaggt ttctctggtt aattttcatg acgattcttt gtggtacgat
+     1621 ccaggcataa gatagggcac ctaacccgat actgtgaact tatatgacgg ctgaacatgc
+     1681 cctaatagtc tgccaaaagg gaaacctata acggctctaa acgggccccg ggtacgtaac
+     1741 agcaatgttc ctgtccacca aggcgttttt agtaaccgcc gatcgatctc gatcgaattc
+     1801 cgttttacgc
+//
--- /dev/null	Thu Jan 01 00:00:00 1970 +0000
+++ b/test-data/init/gibson_assembly_simulation/construct_3/provided_parts_records/Frag_2.gb	Fri May 16 11:32:06 2025 +0000
@@ -0,0 +1,42 @@
+LOCUS       Frag_2                  1820 bp    DNA     circular UNK 01-JAN-1980
+DEFINITION  Frag_2.
+ACCESSION   Frag_2
+VERSION     Frag_2
+KEYWORDS    .
+SOURCE      .
+  ORGANISM  .
+            .
+FEATURES             Location/Qualifiers
+ORIGIN
+        1 gatcgaattc cgttttacgc cccagatcgc agctcccttg acagtgtcag ttgaatcccc
+       61 attctaggtt tcctgataaa actaagtacg gggacgcatc agtcgaaagc aatcacagat
+      121 aatagatatc ttgagcagaa agacgtcttc acgaatcagg agcgagtgtc ccctttgaaa
+      181 gtgcgggcaa caataggtgt gaggtttcac ggttgcttga tcagtagctg ttcactctct
+      241 cgcaggccta catagtgagg tggtgagatt gttcaggtct gtctcctgcg cggttgtcga
+      301 gccccgtcgg gcacgctaac aaggacagga attcgggtcg tcaaataaca atttacgtca
+      361 tcgcatccct caagggtaag gcgtgatctc catctcggtt cccaattggt cattgtgata
+      421 gccacactgc agttaccgaa ggcgatttta tactaccctg ataagtgctc gcagcccctc
+      481 ctccctaata atgtaacgac gagcattaac ccaggagtat ttctcacgtt gctcgtgccc
+      541 agccaaggcg atcaacgcag accggatagc gttagctagc ccacgggtaa aagcgattgt
+      601 tgtactcttt catatgaata cagcactcgc gaatgcaagc ctacgtcggc tcgattctct
+      661 tcctcaccac actggaggcg atgatctagc ccgtctttca ccccgtacct ttatactcgg
+      721 ccgcgtattt ctccaccggg agctctgcct accaaagcgt cgtacgccca ggaagccgtt
+      781 tcctttatcc tccctcatgt ctcaacgcgc gagcatcgga gagtacgcga aatcgactgt
+      841 ctggccaaca ctggacagac gcgcgagacg ctgataaacc cccattttcg tggggttagt
+      901 aaatcggtgg cttcaaacgg ttcgatcgct cgcacgagca ttagtcagga gtatgattgc
+      961 gcatcatctc tactccgtac taggttctgt agctcaggat ctccgggggg atcaagcttt
+     1021 tatgtcccgc gggattagaa gatatccatc catatgttta ctttgatgcg ggtccgagct
+     1081 ctctatgatg ctgctttgac aaaatgtgga aagcctcagc gaccgctctg gggtcaaagc
+     1141 tctacgacac gttgatgcta aacaagttgg actactaagc aaatgaagcg gaagagatac
+     1201 tgagcgctct ctctatgact ttcgctatat ggcgacgtgc gaaaaacgcg atttggccga
+     1261 aatctcaaat aataatgcaa tgtgttggct aagctcgggc aaactcagga tgtgacctag
+     1321 taccctctgc cccgtgagta cccataccca atcaagccag cccaattcgc gataggtaca
+     1381 gataagcctt actcgtcccg atccttgact aaaacactca tcctcgatag tacgtgcctt
+     1441 gtagagtccg acggccatag gtaaacgacc agttagtgtc gtagggtcct ccactttagc
+     1501 tacgattgca actcccttac cttcgtgccg gcgcgctcct cttgctacca tcacgcttca
+     1561 aatcgggtgg aagaccaact gatgaatgag ggtgcagacc ccagtggagc ataatacgat
+     1621 gcgcccacga tactctagag ccacgcgtcg acgttcgtaa gatgtcccgg gcccgtgggt
+     1681 ggccacatcg gccgcccatc cttgtgtctt ccgataagta ctccctttca aggactctcc
+     1741 gataccggct tagaacacga acggacaacg ctttcagcgc tgagaaatga cggctgcttc
+     1801 aaccagaacg atacagcctt
+//
--- /dev/null	Thu Jan 01 00:00:00 1970 +0000
+++ b/test-data/init/gibson_assembly_simulation/construct_3/provided_parts_records/Frag_3.gb	Fri May 16 11:32:06 2025 +0000
@@ -0,0 +1,42 @@
+LOCUS       Frag_3                  1819 bp    DNA     circular UNK 01-JAN-1980
+DEFINITION  Frag_3.
+ACCESSION   Frag_3
+VERSION     Frag_3
+KEYWORDS    .
+SOURCE      .
+  ORGANISM  .
+            .
+FEATURES             Location/Qualifiers
+ORIGIN
+        1 aaccagaacg atacagcctt ctttgctaga tagcctctag tgtcagccac caagtccgcc
+       61 acctaatcct tcgccgaggg tcaaagcttc tgaccatcca attgttaggc actcttggaa
+      121 ccttgcaagt acctgatcat gcagaaaatg gacttgcccg gagcatattc attataagta
+      181 ccattcacgg caggttatag tatgcgttga cgcggggtga tacggtaatg caagtaacca
+      241 tcgggccgcg gtatgcacat agaagggtgt ttgacttggt ttcttacagt gcaactgcat
+      301 atgtggaccg ccattccaag tgaaaggata cgaagggagg tttcggactg ctatccagag
+      361 catggaaagc cttcaaggtg gtgcgcactg gaatagtgac tcggggattg tatgtcgagc
+      421 cgcgtccagt ctttcctata cttatgcgag caaatagacc gagtggaact tgattgcatc
+      481 agccgaatca cgatgaaaac tcagcttaca attcgtaagc acttcaaata tatgcccgga
+      541 aaatcgccgt ccagtgactt gtaatagctc cagggtcagt agcgctgccc tggccgaacc
+      601 aggtgacggt tacgtggacc tcacagtatc aatgttgcag tgcgccacca gattaagctg
+      661 gccgtgtcat ggtgaacaac cgtgataaaa gaacgggagt atgagagtgc cacccaagag
+      721 tggtactcca ggattcggaa aggggagggg gcttttcctg cttaacaacc ttcctcggca
+      781 cggtctaagc gtctcactcg tcctaaactc taccatcatg cagctaggcg aaagtataac
+      841 tttagggtct atcaggatga gctatctgta ccacggtgat gagataagta gggggtgcgc
+      901 tagggtcgtt cgtgttttca tcgtctatag tacctatttc tcgtcttcca ttagcgcata
+      961 cggccatctc gcggcggcta cgtcagccag cgtcaacccc aagtcactaa tttccgttat
+     1021 tataggtgta gctcataact tcttctgccg accaagccaa aagctttgcg gcagctgcaa
+     1081 ggccacgtta ggctctcgga cggcagatat ttattaataa caccactggg ttccagctct
+     1141 taacgcactt cccttcactg gatcacctgt acgcccataa gctaagcctg aagccacggc
+     1201 ctcaatcgtg gacattactc ttagcaaatc cacattacca tgtcaccaat ccccgaaccc
+     1261 cgcgccgacc taaggcgggg tacctcgtgc acggcagcat cgagggaaat atattacaaa
+     1321 agacgcggcg atccaacggt tgataaaaac agttccgtgg aaggcggacg tgtgcttagc
+     1381 gcatgcttct caccgagtga cagcaccgat tccatctcgc tagcacgccg atgagcctcg
+     1441 ctgtgggact atggtccagc ctatgcttaa ctaggcagaa cagagagtat ggtggtcctc
+     1501 ggtaaggtcg atttggtggc actcgcaaga tacgcgggtt attagtagag cgcagtcagg
+     1561 gcccatcgcc agcatttgca tgctcgccgt acgctatcct tgtactacgg ttcctcagtg
+     1621 gctataaagg aatgtcacaa ctccattagc cccttttgtt cagcgcttag tcatggtggg
+     1681 actgactcac cgagactaca tacggattgt gcccgcagag acatgccttt catgctgggg
+     1741 ttttgtaagc agctccacgg ggtagtgtca ccatgccttc gacctatgct tatgaaaccc
+     1801 gaggtaatgc ggcaggatc
+//
--- /dev/null	Thu Jan 01 00:00:00 1970 +0000
+++ b/test-data/init/gibson_assembly_simulation/construct_3/provided_parts_records/Frag_4c.gb	Fri May 16 11:32:06 2025 +0000
@@ -0,0 +1,32 @@
+LOCUS       Frag_4c                 1218 bp    DNA     circular UNK 01-JAN-1980
+DEFINITION  Frag_4c.
+ACCESSION   Frag_4c
+VERSION     Frag_4c
+KEYWORDS    .
+SOURCE      .
+  ORGANISM  .
+            .
+FEATURES             Location/Qualifiers
+ORIGIN
+        1 aggtaatgcg gcaggatccc gtggatccta cgcttagcct gttagggggg gggttctcct
+       61 cggcccccag ccagcgcgta ttccgcgcat tcctccgagt gcgtatcgcg caaaccacaa
+      121 gatacctctc aacgactagc ggtgaaccac caagcttgac atacgtgccc cttcggaaac
+      181 gttattagtg gtcctgagtg gtacgtcccg agtatacggg gcagcgatag taacgctaca
+      241 aatagctaga ccgacgacaa acacagcact gaatatccaa cagtggcaac gagacgctta
+      301 gaaagggaaa ctacatacca gttcaatccg ggatgacttc aaaagggtat gtttgttttg
+      361 aagcgaagct ttggttgtca ttcagttcct agagtttacg gcgctgatat ggctctagga
+      421 gtccagtgaa ttcgtcagca taagccccac atcgtaggaa attgcccggt cgtcggtcta
+      481 gcaaatgctc ggtaaactgg gagtgtacta acaccatgtc gtggtaaccc ggtggaccgg
+      541 ctactagaga catatttatt catgctcagt tgaacctgtt tcgagggggc cgagttaaca
+      601 taaagtgatt agtcacagcg cattaagata gaacagggat atagctcgtt gcatccataa
+      661 attgcccacc gtagggagaa cgccgttgga aaatgagagt taggcgatga gcggttgtcg
+      721 cccgcacaga caaaggatgc ctttataaat agtagcggcc ttgtctgcac cagacgtttg
+      781 tgggtcgacg tgctattcta gccaaaagca aaatgtatca tactacaggc aataggccct
+      841 atgctgacca aacttgggga cccttgcgcc ttctctctta cgcataacat gcataggtac
+      901 ctctactcat caggcagggc ggcgtgaggt cactatggct caagatgtgt acgactaaag
+      961 aaaggtttat gctccttccc caaggacgca tttgggactg ctacttgccc ctagcgaatt
+     1021 cactaggatt tttgtagaac catgagcgcc ctatccgata gcacagagac aatgctacaa
+     1081 gcaactgtgc atgcgctcga tcgccgtgca ttaatacgta ttatagcgta tcgtgtacgc
+     1141 taatatctta gtgcaccgca cgctggttgg atacaattcc gtgaaataat tcctgcttac
+     1201 acaggggctt tctggcgc
+//
--- /dev/null	Thu Jan 01 00:00:00 1970 +0000
+++ b/test-data/init/gibson_assembly_simulation/construct_3/provided_parts_records/Frag_5b.gb	Fri May 16 11:32:06 2025 +0000
@@ -0,0 +1,35 @@
+LOCUS       Frag_5b                 1428 bp    DNA     circular UNK 01-JAN-1980
+DEFINITION  Frag_5b.
+ACCESSION   Frag_5b
+VERSION     Frag_5b
+KEYWORDS    .
+SOURCE      .
+  ORGANISM  .
+            .
+FEATURES             Location/Qualifiers
+ORIGIN
+        1 acaggggctt tctggcgcat ggctgtgtct ggaaaaaaaa aaaaaaaaaa aacatgaacc
+       61 cggcgggaaa tgaggggaaa ccccggggag caacgacact aagcctggca gttgttcaga
+      121 taggacgctt ttgtcagtgg gcggttttgc atccactaac tatcataaac gacacaacgt
+      181 cgaatgatca tcggcggttt gcatgtagag acagctcctg caacaccata ccggctcgtg
+      241 gaattacgct gtgcgccggc cctcattcga ttgtgtccag cgtcggcgcg aatgatgatt
+      301 gagatgtgct tcggctcaga gcgtgcacag gtagttctcc ccccttacct agctgatcca
+      361 gcaattccac gctggcccgc gcgtccttgg gtaacactgg atctgtaccc aaatacaccg
+      421 tcgtgattgt taactaccgt atggcggtta cgatcgagtg acactattat tagaccgcta
+      481 ctccaagtcc caacttttca tcgccataca gaagagaacg agaaagtcga agagttatag
+      541 cgtgtacact tctgattagc taacgaatcg atgcgtacag catactcgag caactttatg
+      601 ggtcgtctgt ctccttgtac cccgcttgac gaggatgtgt ttgtaggcgg cttggatatc
+      661 ggcagtgtat ccgcatggtc aaacacttta gcccgaccgg tgctcaaggt cgaaatccta
+      721 atatagattg ggataggacc cgtccattac taggcgacat tcgcagtcac gagcccgcac
+      781 ggggtgcctc aacacggtga cactcaattc gccggcactg agtacgacga tcgtgattgc
+      841 cataccgtca tgttttgtgt tacccctgat aagaagcgca gatatggcac gggggcagag
+      901 ggcggagtag acccatgcaa aactctagcc tctgggcagc atgatcgacg tagaacgccg
+      961 ttgtgactca ctagtttcag ttatgatgtt cagccaagaa tcctccattt tgacgtgaac
+     1021 cttctccctt tacaccttga agctgcaata ttaagtcgac cctttaagtt gccttgtctt
+     1081 ggtctagagc ccgcagctca ccgataaaat gagcagtcaa ttttagcggc ggttgtccag
+     1141 gttacatgca ctttgggctg gaaccgcgtt acgtttggag tacttagaag tgtcgtaggc
+     1201 ataggagagc cgaaacttga tattgggtct agttagtgct ctaccccgct tcggatccgt
+     1261 aatagtgatg ttgcatgaga cgcttgcctc aaggcgacat acggtggcgg ttgctggaaa
+     1321 tgacgcccca ccccgtgata atttggggac gagccgcacg ataacttctg ccagcgaccg
+     1381 cccctcccac gtccgatggt gattccgaac tccacctgcg tctatcgt
+//
Binary file test-data/init/gibson_assembly_simulation/construct_4/construct_4_connections_graph.pdf has changed
--- /dev/null	Thu Jan 01 00:00:00 1970 +0000
+++ b/test-data/init/gibson_assembly_simulation/construct_4/error.csv	Fri May 16 11:32:06 2025 +0000
@@ -0,0 +1,3 @@
+assembly_name;message;suggestion;data
+construct_4;Wrong number of constructs;expected_: 1,found: 0
+construct_4;Some parts are unused;unused_parts: Frag_1 & Frag_2 & Frag_3 & Frag_4
\ No newline at end of file
Binary file test-data/init/gibson_assembly_simulation/construct_4/fragments_in_construct_4_homology_mix/Frag_1_01.pdf has changed
Binary file test-data/init/gibson_assembly_simulation/construct_4/fragments_in_construct_4_homology_mix/Frag_2_01.pdf has changed
Binary file test-data/init/gibson_assembly_simulation/construct_4/fragments_in_construct_4_homology_mix/Frag_3_01.pdf has changed
Binary file test-data/init/gibson_assembly_simulation/construct_4/fragments_in_construct_4_homology_mix/Frag_4_01.pdf has changed
Binary file test-data/init/gibson_assembly_simulation/construct_4/provided_parts_plots/Frag_1.pdf has changed
Binary file test-data/init/gibson_assembly_simulation/construct_4/provided_parts_plots/Frag_2.pdf has changed
Binary file test-data/init/gibson_assembly_simulation/construct_4/provided_parts_plots/Frag_3.pdf has changed
Binary file test-data/init/gibson_assembly_simulation/construct_4/provided_parts_plots/Frag_4.pdf has changed
--- /dev/null	Thu Jan 01 00:00:00 1970 +0000
+++ b/test-data/init/gibson_assembly_simulation/construct_4/provided_parts_records/Frag_1.gb	Fri May 16 11:32:06 2025 +0000
@@ -0,0 +1,42 @@
+LOCUS       Frag_1                  1810 bp    DNA     circular UNK 01-JAN-1980
+DEFINITION  Frag_1.
+ACCESSION   Frag_1
+VERSION     Frag_1
+KEYWORDS    .
+SOURCE      .
+  ORGANISM  .
+            .
+FEATURES             Location/Qualifiers
+ORIGIN
+        1 ctccacctgc gtctatcgta cagtgctaaa atggcagcag atagtgaaac ttccgctaag
+       61 ctagcccctc agggtacact gcaccgaggc gtgctgtcaa tacttgatta agtcgggttg
+      121 tcggggacct gccgtcacgc ttccgagtgt atatccggat ttagttgacg tcatacagag
+      181 gcactaagaa gaataaacgc ttacctccag caatcgtgta gtgtcaggtg tacgttctcc
+      241 cttgcgccgt tcggcaagcg tccggtgtcg ggctgcaagg aataaatctt tatggaccag
+      301 aggggcttgt ttcctcatat gggtgcgtgc acttatacga ttcaaaggtg gatatggccg
+      361 cataacacgt agccaggcta tagtcccgcg gcctaattcc ttcgagtgcg ggtgcctgtt
+      421 tttgtttttc ctttacgaca cgaaccgctc taacctgctc tatttcgcca cgttccagtg
+      481 aacctcttag cctaccgccc acgtacggtg ggacgcgtcg agcagttaag gtactgtgga
+      541 gaaatcgttc aatattagaa aacaggcggt gtacgaatta ctgtgtcccg gtgttgcccg
+      601 tttaacggct gccgtggtca taccgtgagg caccacgagg ggatgctacg caacatgcga
+      661 ggtgtaatca gcagggaaga tcccggggat cgaaagcggt ccgcgatttg cgaccgatat
+      721 gcataaggtg tcatttatat tacacctacg acactggtac cggctcacag ccaaatgcac
+      781 agtctcaaga tagaattcgc aaaaattagg cttatcgggc gcttactctt tgttacactt
+      841 ctggtctgtg agtgacgccc tgtgtcccat cactgcatgt gaggatgcgt gtactgcacc
+      901 tgtgaattac agacgtttcc ctaccagggc gctacgttat aatgttcggt tgcaaccctc
+      961 tatagggtga tctcgacata ccactatggt ttgcgcgtct cgggtgcttt tggcgagggc
+     1021 caggtacggc ggtgagacag cgtattttgc gaatagggta ttcggacgca cggtgtatag
+     1081 ctcttggaaa acgactcttc gacgggcgtg tagaagtagc caagcagttc ggttgttatc
+     1141 actaaatgcg gaccatgtgc agccgtttag gagaggagtc tgcaatggat cagctggtca
+     1201 gattgtacca ctcggttgag cctaaggcac ttcaggtgct cggattgtaa tgaaccctca
+     1261 ggttacgccg ttgcgctgag atcccacaag ccataagcaa tgagaatcga gcagctatcg
+     1321 aattacgcag cacttgctga tgaactgggt gcacctaaag cgcccgataa aacggaggga
+     1381 gtgaggtaac tactacattg cgagtagtgc gaggggcctc cgagactaca ttagagcagc
+     1441 catgccgaat acgacaaaat ctatagcctt gcgaacgtag gggactgatt tatggacaac
+     1501 aggaccgaaa caagttggag ccacaacgga gctatggacg ttttcactat tgatgggtgg
+     1561 cttgcgtccg catcccaggt ttctctggtt aattttcatg acgattcttt gtggtacgat
+     1621 ccaggcataa gatagggcac ctaacccgat actgtgaact tatatgacgg ctgaacatgc
+     1681 cctaatagtc tgccaaaagg gaaacctata acggctctaa acgggccccg ggtacgtaac
+     1741 agcaatgttc ctgtccacca aggcgttttt agtaaccgcc gatcgatctc gatcgaattc
+     1801 cgttttacgc
+//
--- /dev/null	Thu Jan 01 00:00:00 1970 +0000
+++ b/test-data/init/gibson_assembly_simulation/construct_4/provided_parts_records/Frag_2.gb	Fri May 16 11:32:06 2025 +0000
@@ -0,0 +1,42 @@
+LOCUS       Frag_2                  1820 bp    DNA     circular UNK 01-JAN-1980
+DEFINITION  Frag_2.
+ACCESSION   Frag_2
+VERSION     Frag_2
+KEYWORDS    .
+SOURCE      .
+  ORGANISM  .
+            .
+FEATURES             Location/Qualifiers
+ORIGIN
+        1 gatcgaattc cgttttacgc cccagatcgc agctcccttg acagtgtcag ttgaatcccc
+       61 attctaggtt tcctgataaa actaagtacg gggacgcatc agtcgaaagc aatcacagat
+      121 aatagatatc ttgagcagaa agacgtcttc acgaatcagg agcgagtgtc ccctttgaaa
+      181 gtgcgggcaa caataggtgt gaggtttcac ggttgcttga tcagtagctg ttcactctct
+      241 cgcaggccta catagtgagg tggtgagatt gttcaggtct gtctcctgcg cggttgtcga
+      301 gccccgtcgg gcacgctaac aaggacagga attcgggtcg tcaaataaca atttacgtca
+      361 tcgcatccct caagggtaag gcgtgatctc catctcggtt cccaattggt cattgtgata
+      421 gccacactgc agttaccgaa ggcgatttta tactaccctg ataagtgctc gcagcccctc
+      481 ctccctaata atgtaacgac gagcattaac ccaggagtat ttctcacgtt gctcgtgccc
+      541 agccaaggcg atcaacgcag accggatagc gttagctagc ccacgggtaa aagcgattgt
+      601 tgtactcttt catatgaata cagcactcgc gaatgcaagc ctacgtcggc tcgattctct
+      661 tcctcaccac actggaggcg atgatctagc ccgtctttca ccccgtacct ttatactcgg
+      721 ccgcgtattt ctccaccggg agctctgcct accaaagcgt cgtacgccca ggaagccgtt
+      781 tcctttatcc tccctcatgt ctcaacgcgc gagcatcgga gagtacgcga aatcgactgt
+      841 ctggccaaca ctggacagac gcgcgagacg ctgataaacc cccattttcg tggggttagt
+      901 aaatcggtgg cttcaaacgg ttcgatcgct cgcacgagca ttagtcagga gtatgattgc
+      961 gcatcatctc tactccgtac taggttctgt agctcaggat ctccgggggg atcaagcttt
+     1021 tatgtcccgc gggattagaa gatatccatc catatgttta ctttgatgcg ggtccgagct
+     1081 ctctatgatg ctgctttgac aaaatgtgga aagcctcagc gaccgctctg gggtcaaagc
+     1141 tctacgacac gttgatgcta aacaagttgg actactaagc aaatgaagcg gaagagatac
+     1201 tgagcgctct ctctatgact ttcgctatat ggcgacgtgc gaaaaacgcg atttggccga
+     1261 aatctcaaat aataatgcaa tgtgttggct aagctcgggc aaactcagga tgtgacctag
+     1321 taccctctgc cccgtgagta cccataccca atcaagccag cccaattcgc gataggtaca
+     1381 gataagcctt actcgtcccg atccttgact aaaacactca tcctcgatag tacgtgcctt
+     1441 gtagagtccg acggccatag gtaaacgacc agttagtgtc gtagggtcct ccactttagc
+     1501 tacgattgca actcccttac cttcgtgccg gcgcgctcct cttgctacca tcacgcttca
+     1561 aatcgggtgg aagaccaact gatgaatgag ggtgcagacc ccagtggagc ataatacgat
+     1621 gcgcccacga tactctagag ccacgcgtcg acgttcgtaa gatgtcccgg gcccgtgggt
+     1681 ggccacatcg gccgcccatc cttgtgtctt ccgataagta ctccctttca aggactctcc
+     1741 gataccggct tagaacacga acggacaacg ctttcagcgc tgagaaatga cggctgcttc
+     1801 aaccagaacg atacagcctt
+//
--- /dev/null	Thu Jan 01 00:00:00 1970 +0000
+++ b/test-data/init/gibson_assembly_simulation/construct_4/provided_parts_records/Frag_3.gb	Fri May 16 11:32:06 2025 +0000
@@ -0,0 +1,42 @@
+LOCUS       Frag_3                  1819 bp    DNA     circular UNK 01-JAN-1980
+DEFINITION  Frag_3.
+ACCESSION   Frag_3
+VERSION     Frag_3
+KEYWORDS    .
+SOURCE      .
+  ORGANISM  .
+            .
+FEATURES             Location/Qualifiers
+ORIGIN
+        1 aaccagaacg atacagcctt ctttgctaga tagcctctag tgtcagccac caagtccgcc
+       61 acctaatcct tcgccgaggg tcaaagcttc tgaccatcca attgttaggc actcttggaa
+      121 ccttgcaagt acctgatcat gcagaaaatg gacttgcccg gagcatattc attataagta
+      181 ccattcacgg caggttatag tatgcgttga cgcggggtga tacggtaatg caagtaacca
+      241 tcgggccgcg gtatgcacat agaagggtgt ttgacttggt ttcttacagt gcaactgcat
+      301 atgtggaccg ccattccaag tgaaaggata cgaagggagg tttcggactg ctatccagag
+      361 catggaaagc cttcaaggtg gtgcgcactg gaatagtgac tcggggattg tatgtcgagc
+      421 cgcgtccagt ctttcctata cttatgcgag caaatagacc gagtggaact tgattgcatc
+      481 agccgaatca cgatgaaaac tcagcttaca attcgtaagc acttcaaata tatgcccgga
+      541 aaatcgccgt ccagtgactt gtaatagctc cagggtcagt agcgctgccc tggccgaacc
+      601 aggtgacggt tacgtggacc tcacagtatc aatgttgcag tgcgccacca gattaagctg
+      661 gccgtgtcat ggtgaacaac cgtgataaaa gaacgggagt atgagagtgc cacccaagag
+      721 tggtactcca ggattcggaa aggggagggg gcttttcctg cttaacaacc ttcctcggca
+      781 cggtctaagc gtctcactcg tcctaaactc taccatcatg cagctaggcg aaagtataac
+      841 tttagggtct atcaggatga gctatctgta ccacggtgat gagataagta gggggtgcgc
+      901 tagggtcgtt cgtgttttca tcgtctatag tacctatttc tcgtcttcca ttagcgcata
+      961 cggccatctc gcggcggcta cgtcagccag cgtcaacccc aagtcactaa tttccgttat
+     1021 tataggtgta gctcataact tcttctgccg accaagccaa aagctttgcg gcagctgcaa
+     1081 ggccacgtta ggctctcgga cggcagatat ttattaataa caccactggg ttccagctct
+     1141 taacgcactt cccttcactg gatcacctgt acgcccataa gctaagcctg aagccacggc
+     1201 ctcaatcgtg gacattactc ttagcaaatc cacattacca tgtcaccaat ccccgaaccc
+     1261 cgcgccgacc taaggcgggg tacctcgtgc acggcagcat cgagggaaat atattacaaa
+     1321 agacgcggcg atccaacggt tgataaaaac agttccgtgg aaggcggacg tgtgcttagc
+     1381 gcatgcttct caccgagtga cagcaccgat tccatctcgc tagcacgccg atgagcctcg
+     1441 ctgtgggact atggtccagc ctatgcttaa ctaggcagaa cagagagtat ggtggtcctc
+     1501 ggtaaggtcg atttggtggc actcgcaaga tacgcgggtt attagtagag cgcagtcagg
+     1561 gcccatcgcc agcatttgca tgctcgccgt acgctatcct tgtactacgg ttcctcagtg
+     1621 gctataaagg aatgtcacaa ctccattagc cccttttgtt cagcgcttag tcatggtggg
+     1681 actgactcac cgagactaca tacggattgt gcccgcagag acatgccttt catgctgggg
+     1741 ttttgtaagc agctccacgg ggtagtgtca ccatgccttc gacctatgct tatgaaaccc
+     1801 gaggtaatgc ggcaggatc
+//
--- /dev/null	Thu Jan 01 00:00:00 1970 +0000
+++ b/test-data/init/gibson_assembly_simulation/construct_4/provided_parts_records/Frag_4.gb	Fri May 16 11:32:06 2025 +0000
@@ -0,0 +1,32 @@
+LOCUS       Frag_4                  1218 bp    DNA     circular UNK 01-JAN-1980
+DEFINITION  Frag_4.
+ACCESSION   Frag_4
+VERSION     Frag_4
+KEYWORDS    .
+SOURCE      .
+  ORGANISM  .
+            .
+FEATURES             Location/Qualifiers
+ORIGIN
+        1 aggtaatgcg gcaggatccc gtggatccta cgcttagcct gtttaagcca tcgttctcct
+       61 cggcccccag ccagcgcgta ttccgcgcat tcctccgagt gcgtatcgcg caaaccacaa
+      121 gatacctctc aacgactagc ggtgaaccac caagcttgac atacgtgccc cttcggaaac
+      181 gttattagtg gtcctgagtg gtacgtcccg agtatacggg gcagcgatag taacgctaca
+      241 aatagctagg cgaggttgcg atacctgaat gaatatccaa cagtggcaac gagacgctta
+      301 gaaagggaaa ctacatacca gttcaatccg ggatgacttc aaaagggtat gtttgttttg
+      361 aagcgaagct ttggttgtca ttcagttcct agagtttacg gcgctgatat ggctctagga
+      421 gtccagtgaa ttcgtcagca taagccccac atcgtaggaa attgcccggt cgtcggtcta
+      481 gcaaatgctc ggtaaactgg gagtgtacta acaccatgtc gtggtaaccc ggtggaccgg
+      541 ctactagaga catatttatt catgctcagt tgaacctgtt tcgagggggc cgagttaaca
+      601 taaagtgatt agtcacagcg cattaagata gaacagggat atagctcgtt gcatccataa
+      661 attgcccacc gtagggagaa cgccgttgga aaatgagagt taggcgatga gcggttgtcg
+      721 cccgcacaga caaaggatgc ctttataaat agtagcggcc ttgtctgcac cagacgtttg
+      781 tgggtcgacg tgctattcta gccaaaagca aaatgtatca tactacaggc aataggccct
+      841 atgctgacca aacttgggga cccttgcgcc ttctctctta cgcataacat gcataggtac
+      901 ctctactcat caggcagggc ggcgtgaggt cactatggct caagatgtgt acgactaaag
+      961 aaaggtttat gctccttccc caaggacgca tttgggactg ctacttgccc ctagcgaatt
+     1021 cactaggatt tttgtagaac catgagcgcc ctatccgata gcacagagac aatgctacaa
+     1081 gcaactgtgc atgcgctcga tcgccgtgca ttaatacgta ttatagcgta tcgtgtacgc
+     1141 taatatctta gtgcaccgca cgctggttgg atacaattcc gtgaaataat tcctgcttac
+     1201 acaggggctt tctggcgc
+//
--- /dev/null	Thu Jan 01 00:00:00 1970 +0000
+++ b/test-data/init/gibson_assembly_simulation/construct_4/warnings.csv	Fri May 16 11:32:06 2025 +0000
@@ -0,0 +1,2 @@
+assembly_name;message;suggestion;data
+construct_4;Part(s) with single-sided sticky end;parts: Frag_1 & Frag_4
\ No newline at end of file
Binary file test-data/init/gibson_assembly_simulation/construct_5/construct_5_connections_graph.pdf has changed
--- /dev/null	Thu Jan 01 00:00:00 1970 +0000
+++ b/test-data/init/gibson_assembly_simulation/construct_5/error.csv	Fri May 16 11:32:06 2025 +0000
@@ -0,0 +1,3 @@
+assembly_name;message;suggestion;data
+construct_5;Wrong number of constructs;expected_: 1,found: 0
+construct_5;Some parts are unused;unused_parts: Frag_1 & Frag_2 & Frag_3 & Frag_4 & Frag_4b
\ No newline at end of file
Binary file test-data/init/gibson_assembly_simulation/construct_5/fragments_in_construct_5_homology_mix/Frag_1_01.pdf has changed
Binary file test-data/init/gibson_assembly_simulation/construct_5/fragments_in_construct_5_homology_mix/Frag_2_01.pdf has changed
Binary file test-data/init/gibson_assembly_simulation/construct_5/fragments_in_construct_5_homology_mix/Frag_3_01.pdf has changed
Binary file test-data/init/gibson_assembly_simulation/construct_5/fragments_in_construct_5_homology_mix/Frag_4_01.pdf has changed
Binary file test-data/init/gibson_assembly_simulation/construct_5/fragments_in_construct_5_homology_mix/Frag_4b_01.pdf has changed
Binary file test-data/init/gibson_assembly_simulation/construct_5/provided_parts_plots/Frag_1.pdf has changed
Binary file test-data/init/gibson_assembly_simulation/construct_5/provided_parts_plots/Frag_2.pdf has changed
Binary file test-data/init/gibson_assembly_simulation/construct_5/provided_parts_plots/Frag_3.pdf has changed
Binary file test-data/init/gibson_assembly_simulation/construct_5/provided_parts_plots/Frag_4.pdf has changed
Binary file test-data/init/gibson_assembly_simulation/construct_5/provided_parts_plots/Frag_4b.pdf has changed
--- /dev/null	Thu Jan 01 00:00:00 1970 +0000
+++ b/test-data/init/gibson_assembly_simulation/construct_5/provided_parts_records/Frag_1.gb	Fri May 16 11:32:06 2025 +0000
@@ -0,0 +1,42 @@
+LOCUS       Frag_1                  1810 bp    DNA     circular UNK 01-JAN-1980
+DEFINITION  Frag_1.
+ACCESSION   Frag_1
+VERSION     Frag_1
+KEYWORDS    .
+SOURCE      .
+  ORGANISM  .
+            .
+FEATURES             Location/Qualifiers
+ORIGIN
+        1 ctccacctgc gtctatcgta cagtgctaaa atggcagcag atagtgaaac ttccgctaag
+       61 ctagcccctc agggtacact gcaccgaggc gtgctgtcaa tacttgatta agtcgggttg
+      121 tcggggacct gccgtcacgc ttccgagtgt atatccggat ttagttgacg tcatacagag
+      181 gcactaagaa gaataaacgc ttacctccag caatcgtgta gtgtcaggtg tacgttctcc
+      241 cttgcgccgt tcggcaagcg tccggtgtcg ggctgcaagg aataaatctt tatggaccag
+      301 aggggcttgt ttcctcatat gggtgcgtgc acttatacga ttcaaaggtg gatatggccg
+      361 cataacacgt agccaggcta tagtcccgcg gcctaattcc ttcgagtgcg ggtgcctgtt
+      421 tttgtttttc ctttacgaca cgaaccgctc taacctgctc tatttcgcca cgttccagtg
+      481 aacctcttag cctaccgccc acgtacggtg ggacgcgtcg agcagttaag gtactgtgga
+      541 gaaatcgttc aatattagaa aacaggcggt gtacgaatta ctgtgtcccg gtgttgcccg
+      601 tttaacggct gccgtggtca taccgtgagg caccacgagg ggatgctacg caacatgcga
+      661 ggtgtaatca gcagggaaga tcccggggat cgaaagcggt ccgcgatttg cgaccgatat
+      721 gcataaggtg tcatttatat tacacctacg acactggtac cggctcacag ccaaatgcac
+      781 agtctcaaga tagaattcgc aaaaattagg cttatcgggc gcttactctt tgttacactt
+      841 ctggtctgtg agtgacgccc tgtgtcccat cactgcatgt gaggatgcgt gtactgcacc
+      901 tgtgaattac agacgtttcc ctaccagggc gctacgttat aatgttcggt tgcaaccctc
+      961 tatagggtga tctcgacata ccactatggt ttgcgcgtct cgggtgcttt tggcgagggc
+     1021 caggtacggc ggtgagacag cgtattttgc gaatagggta ttcggacgca cggtgtatag
+     1081 ctcttggaaa acgactcttc gacgggcgtg tagaagtagc caagcagttc ggttgttatc
+     1141 actaaatgcg gaccatgtgc agccgtttag gagaggagtc tgcaatggat cagctggtca
+     1201 gattgtacca ctcggttgag cctaaggcac ttcaggtgct cggattgtaa tgaaccctca
+     1261 ggttacgccg ttgcgctgag atcccacaag ccataagcaa tgagaatcga gcagctatcg
+     1321 aattacgcag cacttgctga tgaactgggt gcacctaaag cgcccgataa aacggaggga
+     1381 gtgaggtaac tactacattg cgagtagtgc gaggggcctc cgagactaca ttagagcagc
+     1441 catgccgaat acgacaaaat ctatagcctt gcgaacgtag gggactgatt tatggacaac
+     1501 aggaccgaaa caagttggag ccacaacgga gctatggacg ttttcactat tgatgggtgg
+     1561 cttgcgtccg catcccaggt ttctctggtt aattttcatg acgattcttt gtggtacgat
+     1621 ccaggcataa gatagggcac ctaacccgat actgtgaact tatatgacgg ctgaacatgc
+     1681 cctaatagtc tgccaaaagg gaaacctata acggctctaa acgggccccg ggtacgtaac
+     1741 agcaatgttc ctgtccacca aggcgttttt agtaaccgcc gatcgatctc gatcgaattc
+     1801 cgttttacgc
+//
--- /dev/null	Thu Jan 01 00:00:00 1970 +0000
+++ b/test-data/init/gibson_assembly_simulation/construct_5/provided_parts_records/Frag_2.gb	Fri May 16 11:32:06 2025 +0000
@@ -0,0 +1,42 @@
+LOCUS       Frag_2                  1820 bp    DNA     circular UNK 01-JAN-1980
+DEFINITION  Frag_2.
+ACCESSION   Frag_2
+VERSION     Frag_2
+KEYWORDS    .
+SOURCE      .
+  ORGANISM  .
+            .
+FEATURES             Location/Qualifiers
+ORIGIN
+        1 gatcgaattc cgttttacgc cccagatcgc agctcccttg acagtgtcag ttgaatcccc
+       61 attctaggtt tcctgataaa actaagtacg gggacgcatc agtcgaaagc aatcacagat
+      121 aatagatatc ttgagcagaa agacgtcttc acgaatcagg agcgagtgtc ccctttgaaa
+      181 gtgcgggcaa caataggtgt gaggtttcac ggttgcttga tcagtagctg ttcactctct
+      241 cgcaggccta catagtgagg tggtgagatt gttcaggtct gtctcctgcg cggttgtcga
+      301 gccccgtcgg gcacgctaac aaggacagga attcgggtcg tcaaataaca atttacgtca
+      361 tcgcatccct caagggtaag gcgtgatctc catctcggtt cccaattggt cattgtgata
+      421 gccacactgc agttaccgaa ggcgatttta tactaccctg ataagtgctc gcagcccctc
+      481 ctccctaata atgtaacgac gagcattaac ccaggagtat ttctcacgtt gctcgtgccc
+      541 agccaaggcg atcaacgcag accggatagc gttagctagc ccacgggtaa aagcgattgt
+      601 tgtactcttt catatgaata cagcactcgc gaatgcaagc ctacgtcggc tcgattctct
+      661 tcctcaccac actggaggcg atgatctagc ccgtctttca ccccgtacct ttatactcgg
+      721 ccgcgtattt ctccaccggg agctctgcct accaaagcgt cgtacgccca ggaagccgtt
+      781 tcctttatcc tccctcatgt ctcaacgcgc gagcatcgga gagtacgcga aatcgactgt
+      841 ctggccaaca ctggacagac gcgcgagacg ctgataaacc cccattttcg tggggttagt
+      901 aaatcggtgg cttcaaacgg ttcgatcgct cgcacgagca ttagtcagga gtatgattgc
+      961 gcatcatctc tactccgtac taggttctgt agctcaggat ctccgggggg atcaagcttt
+     1021 tatgtcccgc gggattagaa gatatccatc catatgttta ctttgatgcg ggtccgagct
+     1081 ctctatgatg ctgctttgac aaaatgtgga aagcctcagc gaccgctctg gggtcaaagc
+     1141 tctacgacac gttgatgcta aacaagttgg actactaagc aaatgaagcg gaagagatac
+     1201 tgagcgctct ctctatgact ttcgctatat ggcgacgtgc gaaaaacgcg atttggccga
+     1261 aatctcaaat aataatgcaa tgtgttggct aagctcgggc aaactcagga tgtgacctag
+     1321 taccctctgc cccgtgagta cccataccca atcaagccag cccaattcgc gataggtaca
+     1381 gataagcctt actcgtcccg atccttgact aaaacactca tcctcgatag tacgtgcctt
+     1441 gtagagtccg acggccatag gtaaacgacc agttagtgtc gtagggtcct ccactttagc
+     1501 tacgattgca actcccttac cttcgtgccg gcgcgctcct cttgctacca tcacgcttca
+     1561 aatcgggtgg aagaccaact gatgaatgag ggtgcagacc ccagtggagc ataatacgat
+     1621 gcgcccacga tactctagag ccacgcgtcg acgttcgtaa gatgtcccgg gcccgtgggt
+     1681 ggccacatcg gccgcccatc cttgtgtctt ccgataagta ctccctttca aggactctcc
+     1741 gataccggct tagaacacga acggacaacg ctttcagcgc tgagaaatga cggctgcttc
+     1801 aaccagaacg atacagcctt
+//
--- /dev/null	Thu Jan 01 00:00:00 1970 +0000
+++ b/test-data/init/gibson_assembly_simulation/construct_5/provided_parts_records/Frag_3.gb	Fri May 16 11:32:06 2025 +0000
@@ -0,0 +1,42 @@
+LOCUS       Frag_3                  1819 bp    DNA     circular UNK 01-JAN-1980
+DEFINITION  Frag_3.
+ACCESSION   Frag_3
+VERSION     Frag_3
+KEYWORDS    .
+SOURCE      .
+  ORGANISM  .
+            .
+FEATURES             Location/Qualifiers
+ORIGIN
+        1 aaccagaacg atacagcctt ctttgctaga tagcctctag tgtcagccac caagtccgcc
+       61 acctaatcct tcgccgaggg tcaaagcttc tgaccatcca attgttaggc actcttggaa
+      121 ccttgcaagt acctgatcat gcagaaaatg gacttgcccg gagcatattc attataagta
+      181 ccattcacgg caggttatag tatgcgttga cgcggggtga tacggtaatg caagtaacca
+      241 tcgggccgcg gtatgcacat agaagggtgt ttgacttggt ttcttacagt gcaactgcat
+      301 atgtggaccg ccattccaag tgaaaggata cgaagggagg tttcggactg ctatccagag
+      361 catggaaagc cttcaaggtg gtgcgcactg gaatagtgac tcggggattg tatgtcgagc
+      421 cgcgtccagt ctttcctata cttatgcgag caaatagacc gagtggaact tgattgcatc
+      481 agccgaatca cgatgaaaac tcagcttaca attcgtaagc acttcaaata tatgcccgga
+      541 aaatcgccgt ccagtgactt gtaatagctc cagggtcagt agcgctgccc tggccgaacc
+      601 aggtgacggt tacgtggacc tcacagtatc aatgttgcag tgcgccacca gattaagctg
+      661 gccgtgtcat ggtgaacaac cgtgataaaa gaacgggagt atgagagtgc cacccaagag
+      721 tggtactcca ggattcggaa aggggagggg gcttttcctg cttaacaacc ttcctcggca
+      781 cggtctaagc gtctcactcg tcctaaactc taccatcatg cagctaggcg aaagtataac
+      841 tttagggtct atcaggatga gctatctgta ccacggtgat gagataagta gggggtgcgc
+      901 tagggtcgtt cgtgttttca tcgtctatag tacctatttc tcgtcttcca ttagcgcata
+      961 cggccatctc gcggcggcta cgtcagccag cgtcaacccc aagtcactaa tttccgttat
+     1021 tataggtgta gctcataact tcttctgccg accaagccaa aagctttgcg gcagctgcaa
+     1081 ggccacgtta ggctctcgga cggcagatat ttattaataa caccactggg ttccagctct
+     1141 taacgcactt cccttcactg gatcacctgt acgcccataa gctaagcctg aagccacggc
+     1201 ctcaatcgtg gacattactc ttagcaaatc cacattacca tgtcaccaat ccccgaaccc
+     1261 cgcgccgacc taaggcgggg tacctcgtgc acggcagcat cgagggaaat atattacaaa
+     1321 agacgcggcg atccaacggt tgataaaaac agttccgtgg aaggcggacg tgtgcttagc
+     1381 gcatgcttct caccgagtga cagcaccgat tccatctcgc tagcacgccg atgagcctcg
+     1441 ctgtgggact atggtccagc ctatgcttaa ctaggcagaa cagagagtat ggtggtcctc
+     1501 ggtaaggtcg atttggtggc actcgcaaga tacgcgggtt attagtagag cgcagtcagg
+     1561 gcccatcgcc agcatttgca tgctcgccgt acgctatcct tgtactacgg ttcctcagtg
+     1621 gctataaagg aatgtcacaa ctccattagc cccttttgtt cagcgcttag tcatggtggg
+     1681 actgactcac cgagactaca tacggattgt gcccgcagag acatgccttt catgctgggg
+     1741 ttttgtaagc agctccacgg ggtagtgtca ccatgccttc gacctatgct tatgaaaccc
+     1801 gaggtaatgc ggcaggatc
+//
--- /dev/null	Thu Jan 01 00:00:00 1970 +0000
+++ b/test-data/init/gibson_assembly_simulation/construct_5/provided_parts_records/Frag_4.gb	Fri May 16 11:32:06 2025 +0000
@@ -0,0 +1,32 @@
+LOCUS       Frag_4                  1218 bp    DNA     circular UNK 01-JAN-1980
+DEFINITION  Frag_4.
+ACCESSION   Frag_4
+VERSION     Frag_4
+KEYWORDS    .
+SOURCE      .
+  ORGANISM  .
+            .
+FEATURES             Location/Qualifiers
+ORIGIN
+        1 aggtaatgcg gcaggatccc gtggatccta cgcttagcct gtttaagcca tcgttctcct
+       61 cggcccccag ccagcgcgta ttccgcgcat tcctccgagt gcgtatcgcg caaaccacaa
+      121 gatacctctc aacgactagc ggtgaaccac caagcttgac atacgtgccc cttcggaaac
+      181 gttattagtg gtcctgagtg gtacgtcccg agtatacggg gcagcgatag taacgctaca
+      241 aatagctagg cgaggttgcg atacctgaat gaatatccaa cagtggcaac gagacgctta
+      301 gaaagggaaa ctacatacca gttcaatccg ggatgacttc aaaagggtat gtttgttttg
+      361 aagcgaagct ttggttgtca ttcagttcct agagtttacg gcgctgatat ggctctagga
+      421 gtccagtgaa ttcgtcagca taagccccac atcgtaggaa attgcccggt cgtcggtcta
+      481 gcaaatgctc ggtaaactgg gagtgtacta acaccatgtc gtggtaaccc ggtggaccgg
+      541 ctactagaga catatttatt catgctcagt tgaacctgtt tcgagggggc cgagttaaca
+      601 taaagtgatt agtcacagcg cattaagata gaacagggat atagctcgtt gcatccataa
+      661 attgcccacc gtagggagaa cgccgttgga aaatgagagt taggcgatga gcggttgtcg
+      721 cccgcacaga caaaggatgc ctttataaat agtagcggcc ttgtctgcac cagacgtttg
+      781 tgggtcgacg tgctattcta gccaaaagca aaatgtatca tactacaggc aataggccct
+      841 atgctgacca aacttgggga cccttgcgcc ttctctctta cgcataacat gcataggtac
+      901 ctctactcat caggcagggc ggcgtgaggt cactatggct caagatgtgt acgactaaag
+      961 aaaggtttat gctccttccc caaggacgca tttgggactg ctacttgccc ctagcgaatt
+     1021 cactaggatt tttgtagaac catgagcgcc ctatccgata gcacagagac aatgctacaa
+     1081 gcaactgtgc atgcgctcga tcgccgtgca ttaatacgta ttatagcgta tcgtgtacgc
+     1141 taatatctta gtgcaccgca cgctggttgg atacaattcc gtgaaataat tcctgcttac
+     1201 acaggggctt tctggcgc
+//
--- /dev/null	Thu Jan 01 00:00:00 1970 +0000
+++ b/test-data/init/gibson_assembly_simulation/construct_5/provided_parts_records/Frag_4b.gb	Fri May 16 11:32:06 2025 +0000
@@ -0,0 +1,32 @@
+LOCUS       Frag_4b                 1218 bp    DNA     circular UNK 01-JAN-1980
+DEFINITION  Frag_4b.
+ACCESSION   Frag_4b
+VERSION     Frag_4b
+KEYWORDS    .
+SOURCE      .
+  ORGANISM  .
+            .
+FEATURES             Location/Qualifiers
+ORIGIN
+        1 aggtaatgcg gcaggatccc gtggatccta cgcttagcct gttacccccc ccgttctcct
+       61 cggcccccag ccagcgcgta ttccgcgcat tcctccgagt gcgtatcgcg caaaccacaa
+      121 gatacctctc aacgactagc ggtgaaccac caagcttgac atacgtgccc cttcggaaac
+      181 gttattagtg gtcctgagtg gtacgtcccg agtatacggg gcagcgatag taacgctaca
+      241 aatagctaga ccgacgacaa acacagcact gaatatccaa cagtggcaac gagacgctta
+      301 gaaagggaaa ctacatacca gttcaatccg ggatgacttc aaaagggtat gtttgttttg
+      361 aagcgaagct ttggttgtca ttcagttcct agagtttacg gcgctgatat ggctctagga
+      421 gtccagtgaa ttcgtcagca taagccccac atcgtaggaa attgcccggt cgtcggtcta
+      481 gcaaatgctc ggtaaactgg gagtgtacta acaccatgtc gtggtaaccc ggtggaccgg
+      541 ctactagaga catatttatt catgctcagt tgaacctgtt tcgagggggc cgagttaaca
+      601 taaagtgatt agtcacagcg cattaagata gaacagggat atagctcgtt gcatccataa
+      661 attgcccacc gtagggagaa cgccgttgga aaatgagagt taggcgatga gcggttgtcg
+      721 cccgcacaga caaaggatgc ctttataaat agtagcggcc ttgtctgcac cagacgtttg
+      781 tgggtcgacg tgctattcta gccaaaagca aaatgtatca tactacaggc aataggccct
+      841 atgctgacca aacttgggga cccttgcgcc ttctctctta cgcataacat gcataggtac
+      901 ctctactcat caggcagggc ggcgtgaggt cactatggct caagatgtgt acgactaaag
+      961 aaaggtttat gctccttccc caaggacgca tttgggactg ctacttgccc ctagcgaatt
+     1021 cactaggatt tttgtagaac catgagcgcc ctatccgata gcacagagac aatgctacaa
+     1081 gcaactgtgc atgcgctcga tcgccgtgca ttaatacgta ttatagcgta tcgtgtacgc
+     1141 taatatctta gtgcaccgca cgctggttgg atacaattcc gtgaaataat tcctgcttac
+     1201 acaggggctt tctggcgc
+//
--- /dev/null	Thu Jan 01 00:00:00 1970 +0000
+++ b/test-data/init/gibson_assembly_simulation/construct_5/warnings.csv	Fri May 16 11:32:06 2025 +0000
@@ -0,0 +1,3 @@
+assembly_name;message;suggestion;data
+construct_5;Part(s) with single-sided sticky end;parts: Frag_1 & Frag_4 & Frag_4b
+construct_5;Warning: parts at graph forking positions;parts: Frag_3
\ No newline at end of file
--- /dev/null	Thu Jan 01 00:00:00 1970 +0000
+++ b/test-data/init/gibson_assembly_simulation/gibson_assembly_all_required_parts.txt	Fri May 16 11:32:06 2025 +0000
@@ -0,0 +1,8 @@
+Frag_1
+Frag_2
+Frag_3
+Frag_4
+Frag_4b
+Frag_4c
+Frag_5
+Frag_5b
\ No newline at end of file
--- /dev/null	Thu Jan 01 00:00:00 1970 +0000
+++ b/test-data/init/gibson_assembly_simulation/gibson_assembly_assembly_plan.csv	Fri May 16 11:32:06 2025 +0000
@@ -0,0 +1,4 @@
+construct,parts
+construct_1,Frag_2,Frag_3,Frag_4,Frag_5,Frag_1
+construct_2,Frag_2,Frag_3,Frag_4b,Frag_5,Frag_1
+construct_3,Frag_2,Frag_3,Frag_4c,Frag_5b,Frag_1
\ No newline at end of file
--- /dev/null	Thu Jan 01 00:00:00 1970 +0000
+++ b/test-data/init/gibson_assembly_simulation/gibson_assembly_errors.csv	Fri May 16 11:32:06 2025 +0000
@@ -0,0 +1,5 @@
+assembly_name;message;suggestion;data;used_in
+construct_4;Wrong number of constructs;expected_: 1,found: 0;
+construct_4;Some parts are unused;unused_parts: Frag_1 & Frag_2 & Frag_3 & Frag_4;
+construct_5;Wrong number of constructs;expected_: 1,found: 0;
+construct_5;Some parts are unused;unused_parts: Frag_1 & Frag_2 & Frag_3 & Frag_4 & Frag_4b;
\ No newline at end of file
--- /dev/null	Thu Jan 01 00:00:00 1970 +0000
+++ b/test-data/init/gibson_assembly_simulation/gibson_assembly_simulation_stats.csv	Fri May 16 11:32:06 2025 +0000
@@ -0,0 +1,3 @@
+cancelled_assemblies: 0
+errored_assemblies: 2
+valid_assemblies: 3
\ No newline at end of file
--- /dev/null	Thu Jan 01 00:00:00 1970 +0000
+++ b/test-data/init/gibson_assembly_simulation/gibson_assembly_summary.csv	Fri May 16 11:32:06 2025 +0000
@@ -0,0 +1,4 @@
+assembly_name,construct_id,assembly_level,construct_size,number_of_parts,depends_on,homology_condition,used_in,parts
+construct_1,construct_1,1,8000,5,,"15-80bp, 0.0-+C Tm",,Frag_2 & Frag_3 & Frag_4 & Frag_5 & Frag_1
+construct_2,construct_2,1,8000,5,,"15-80bp, 0.0-+C Tm",,Frag_2 & Frag_3 & Frag_4b & Frag_5 & Frag_1
+construct_3,construct_3,1,8000,5,,"15-80bp, 0.0-+C Tm",,Frag_2 & Frag_3 & Frag_4c & Frag_5b & Frag_1
--- /dev/null	Thu Jan 01 00:00:00 1970 +0000
+++ b/test-data/init/gibson_assembly_simulation/gibson_assembly_warnings.csv	Fri May 16 11:32:06 2025 +0000
@@ -0,0 +1,4 @@
+assembly_name;message;suggestion;data;used_in
+construct_4;Part(s) with single-sided sticky end;parts: Frag_1 & Frag_4;
+construct_5;Part(s) with single-sided sticky end;parts: Frag_1 & Frag_4 & Frag_4b;
+construct_5;Warning: parts at graph forking positions;parts: Frag_3;
\ No newline at end of file
--- /dev/null	Thu Jan 01 00:00:00 1970 +0000
+++ b/test-data/init/gibson_assembly_simulation/part_records/Frag_1.gb	Fri May 16 11:32:06 2025 +0000
@@ -0,0 +1,42 @@
+LOCUS       Frag_1                  1810 bp    DNA     circular UNK 01-JAN-1980
+DEFINITION  Frag_1.
+ACCESSION   Frag_1
+VERSION     Frag_1
+KEYWORDS    .
+SOURCE      .
+  ORGANISM  .
+            .
+FEATURES             Location/Qualifiers
+ORIGIN
+        1 ctccacctgc gtctatcgta cagtgctaaa atggcagcag atagtgaaac ttccgctaag
+       61 ctagcccctc agggtacact gcaccgaggc gtgctgtcaa tacttgatta agtcgggttg
+      121 tcggggacct gccgtcacgc ttccgagtgt atatccggat ttagttgacg tcatacagag
+      181 gcactaagaa gaataaacgc ttacctccag caatcgtgta gtgtcaggtg tacgttctcc
+      241 cttgcgccgt tcggcaagcg tccggtgtcg ggctgcaagg aataaatctt tatggaccag
+      301 aggggcttgt ttcctcatat gggtgcgtgc acttatacga ttcaaaggtg gatatggccg
+      361 cataacacgt agccaggcta tagtcccgcg gcctaattcc ttcgagtgcg ggtgcctgtt
+      421 tttgtttttc ctttacgaca cgaaccgctc taacctgctc tatttcgcca cgttccagtg
+      481 aacctcttag cctaccgccc acgtacggtg ggacgcgtcg agcagttaag gtactgtgga
+      541 gaaatcgttc aatattagaa aacaggcggt gtacgaatta ctgtgtcccg gtgttgcccg
+      601 tttaacggct gccgtggtca taccgtgagg caccacgagg ggatgctacg caacatgcga
+      661 ggtgtaatca gcagggaaga tcccggggat cgaaagcggt ccgcgatttg cgaccgatat
+      721 gcataaggtg tcatttatat tacacctacg acactggtac cggctcacag ccaaatgcac
+      781 agtctcaaga tagaattcgc aaaaattagg cttatcgggc gcttactctt tgttacactt
+      841 ctggtctgtg agtgacgccc tgtgtcccat cactgcatgt gaggatgcgt gtactgcacc
+      901 tgtgaattac agacgtttcc ctaccagggc gctacgttat aatgttcggt tgcaaccctc
+      961 tatagggtga tctcgacata ccactatggt ttgcgcgtct cgggtgcttt tggcgagggc
+     1021 caggtacggc ggtgagacag cgtattttgc gaatagggta ttcggacgca cggtgtatag
+     1081 ctcttggaaa acgactcttc gacgggcgtg tagaagtagc caagcagttc ggttgttatc
+     1141 actaaatgcg gaccatgtgc agccgtttag gagaggagtc tgcaatggat cagctggtca
+     1201 gattgtacca ctcggttgag cctaaggcac ttcaggtgct cggattgtaa tgaaccctca
+     1261 ggttacgccg ttgcgctgag atcccacaag ccataagcaa tgagaatcga gcagctatcg
+     1321 aattacgcag cacttgctga tgaactgggt gcacctaaag cgcccgataa aacggaggga
+     1381 gtgaggtaac tactacattg cgagtagtgc gaggggcctc cgagactaca ttagagcagc
+     1441 catgccgaat acgacaaaat ctatagcctt gcgaacgtag gggactgatt tatggacaac
+     1501 aggaccgaaa caagttggag ccacaacgga gctatggacg ttttcactat tgatgggtgg
+     1561 cttgcgtccg catcccaggt ttctctggtt aattttcatg acgattcttt gtggtacgat
+     1621 ccaggcataa gatagggcac ctaacccgat actgtgaact tatatgacgg ctgaacatgc
+     1681 cctaatagtc tgccaaaagg gaaacctata acggctctaa acgggccccg ggtacgtaac
+     1741 agcaatgttc ctgtccacca aggcgttttt agtaaccgcc gatcgatctc gatcgaattc
+     1801 cgttttacgc
+//
--- /dev/null	Thu Jan 01 00:00:00 1970 +0000
+++ b/test-data/init/gibson_assembly_simulation/part_records/Frag_2.gb	Fri May 16 11:32:06 2025 +0000
@@ -0,0 +1,42 @@
+LOCUS       Frag_2                  1820 bp    DNA     circular UNK 01-JAN-1980
+DEFINITION  Frag_2.
+ACCESSION   Frag_2
+VERSION     Frag_2
+KEYWORDS    .
+SOURCE      .
+  ORGANISM  .
+            .
+FEATURES             Location/Qualifiers
+ORIGIN
+        1 gatcgaattc cgttttacgc cccagatcgc agctcccttg acagtgtcag ttgaatcccc
+       61 attctaggtt tcctgataaa actaagtacg gggacgcatc agtcgaaagc aatcacagat
+      121 aatagatatc ttgagcagaa agacgtcttc acgaatcagg agcgagtgtc ccctttgaaa
+      181 gtgcgggcaa caataggtgt gaggtttcac ggttgcttga tcagtagctg ttcactctct
+      241 cgcaggccta catagtgagg tggtgagatt gttcaggtct gtctcctgcg cggttgtcga
+      301 gccccgtcgg gcacgctaac aaggacagga attcgggtcg tcaaataaca atttacgtca
+      361 tcgcatccct caagggtaag gcgtgatctc catctcggtt cccaattggt cattgtgata
+      421 gccacactgc agttaccgaa ggcgatttta tactaccctg ataagtgctc gcagcccctc
+      481 ctccctaata atgtaacgac gagcattaac ccaggagtat ttctcacgtt gctcgtgccc
+      541 agccaaggcg atcaacgcag accggatagc gttagctagc ccacgggtaa aagcgattgt
+      601 tgtactcttt catatgaata cagcactcgc gaatgcaagc ctacgtcggc tcgattctct
+      661 tcctcaccac actggaggcg atgatctagc ccgtctttca ccccgtacct ttatactcgg
+      721 ccgcgtattt ctccaccggg agctctgcct accaaagcgt cgtacgccca ggaagccgtt
+      781 tcctttatcc tccctcatgt ctcaacgcgc gagcatcgga gagtacgcga aatcgactgt
+      841 ctggccaaca ctggacagac gcgcgagacg ctgataaacc cccattttcg tggggttagt
+      901 aaatcggtgg cttcaaacgg ttcgatcgct cgcacgagca ttagtcagga gtatgattgc
+      961 gcatcatctc tactccgtac taggttctgt agctcaggat ctccgggggg atcaagcttt
+     1021 tatgtcccgc gggattagaa gatatccatc catatgttta ctttgatgcg ggtccgagct
+     1081 ctctatgatg ctgctttgac aaaatgtgga aagcctcagc gaccgctctg gggtcaaagc
+     1141 tctacgacac gttgatgcta aacaagttgg actactaagc aaatgaagcg gaagagatac
+     1201 tgagcgctct ctctatgact ttcgctatat ggcgacgtgc gaaaaacgcg atttggccga
+     1261 aatctcaaat aataatgcaa tgtgttggct aagctcgggc aaactcagga tgtgacctag
+     1321 taccctctgc cccgtgagta cccataccca atcaagccag cccaattcgc gataggtaca
+     1381 gataagcctt actcgtcccg atccttgact aaaacactca tcctcgatag tacgtgcctt
+     1441 gtagagtccg acggccatag gtaaacgacc agttagtgtc gtagggtcct ccactttagc
+     1501 tacgattgca actcccttac cttcgtgccg gcgcgctcct cttgctacca tcacgcttca
+     1561 aatcgggtgg aagaccaact gatgaatgag ggtgcagacc ccagtggagc ataatacgat
+     1621 gcgcccacga tactctagag ccacgcgtcg acgttcgtaa gatgtcccgg gcccgtgggt
+     1681 ggccacatcg gccgcccatc cttgtgtctt ccgataagta ctccctttca aggactctcc
+     1741 gataccggct tagaacacga acggacaacg ctttcagcgc tgagaaatga cggctgcttc
+     1801 aaccagaacg atacagcctt
+//
--- /dev/null	Thu Jan 01 00:00:00 1970 +0000
+++ b/test-data/init/gibson_assembly_simulation/part_records/Frag_3.gb	Fri May 16 11:32:06 2025 +0000
@@ -0,0 +1,42 @@
+LOCUS       Frag_3                  1819 bp    DNA     circular UNK 01-JAN-1980
+DEFINITION  Frag_3.
+ACCESSION   Frag_3
+VERSION     Frag_3
+KEYWORDS    .
+SOURCE      .
+  ORGANISM  .
+            .
+FEATURES             Location/Qualifiers
+ORIGIN
+        1 aaccagaacg atacagcctt ctttgctaga tagcctctag tgtcagccac caagtccgcc
+       61 acctaatcct tcgccgaggg tcaaagcttc tgaccatcca attgttaggc actcttggaa
+      121 ccttgcaagt acctgatcat gcagaaaatg gacttgcccg gagcatattc attataagta
+      181 ccattcacgg caggttatag tatgcgttga cgcggggtga tacggtaatg caagtaacca
+      241 tcgggccgcg gtatgcacat agaagggtgt ttgacttggt ttcttacagt gcaactgcat
+      301 atgtggaccg ccattccaag tgaaaggata cgaagggagg tttcggactg ctatccagag
+      361 catggaaagc cttcaaggtg gtgcgcactg gaatagtgac tcggggattg tatgtcgagc
+      421 cgcgtccagt ctttcctata cttatgcgag caaatagacc gagtggaact tgattgcatc
+      481 agccgaatca cgatgaaaac tcagcttaca attcgtaagc acttcaaata tatgcccgga
+      541 aaatcgccgt ccagtgactt gtaatagctc cagggtcagt agcgctgccc tggccgaacc
+      601 aggtgacggt tacgtggacc tcacagtatc aatgttgcag tgcgccacca gattaagctg
+      661 gccgtgtcat ggtgaacaac cgtgataaaa gaacgggagt atgagagtgc cacccaagag
+      721 tggtactcca ggattcggaa aggggagggg gcttttcctg cttaacaacc ttcctcggca
+      781 cggtctaagc gtctcactcg tcctaaactc taccatcatg cagctaggcg aaagtataac
+      841 tttagggtct atcaggatga gctatctgta ccacggtgat gagataagta gggggtgcgc
+      901 tagggtcgtt cgtgttttca tcgtctatag tacctatttc tcgtcttcca ttagcgcata
+      961 cggccatctc gcggcggcta cgtcagccag cgtcaacccc aagtcactaa tttccgttat
+     1021 tataggtgta gctcataact tcttctgccg accaagccaa aagctttgcg gcagctgcaa
+     1081 ggccacgtta ggctctcgga cggcagatat ttattaataa caccactggg ttccagctct
+     1141 taacgcactt cccttcactg gatcacctgt acgcccataa gctaagcctg aagccacggc
+     1201 ctcaatcgtg gacattactc ttagcaaatc cacattacca tgtcaccaat ccccgaaccc
+     1261 cgcgccgacc taaggcgggg tacctcgtgc acggcagcat cgagggaaat atattacaaa
+     1321 agacgcggcg atccaacggt tgataaaaac agttccgtgg aaggcggacg tgtgcttagc
+     1381 gcatgcttct caccgagtga cagcaccgat tccatctcgc tagcacgccg atgagcctcg
+     1441 ctgtgggact atggtccagc ctatgcttaa ctaggcagaa cagagagtat ggtggtcctc
+     1501 ggtaaggtcg atttggtggc actcgcaaga tacgcgggtt attagtagag cgcagtcagg
+     1561 gcccatcgcc agcatttgca tgctcgccgt acgctatcct tgtactacgg ttcctcagtg
+     1621 gctataaagg aatgtcacaa ctccattagc cccttttgtt cagcgcttag tcatggtggg
+     1681 actgactcac cgagactaca tacggattgt gcccgcagag acatgccttt catgctgggg
+     1741 ttttgtaagc agctccacgg ggtagtgtca ccatgccttc gacctatgct tatgaaaccc
+     1801 gaggtaatgc ggcaggatc
+//
--- /dev/null	Thu Jan 01 00:00:00 1970 +0000
+++ b/test-data/init/gibson_assembly_simulation/part_records/Frag_4.gb	Fri May 16 11:32:06 2025 +0000
@@ -0,0 +1,32 @@
+LOCUS       Frag_4                  1218 bp    DNA     circular UNK 01-JAN-1980
+DEFINITION  Frag_4.
+ACCESSION   Frag_4
+VERSION     Frag_4
+KEYWORDS    .
+SOURCE      .
+  ORGANISM  .
+            .
+FEATURES             Location/Qualifiers
+ORIGIN
+        1 aggtaatgcg gcaggatccc gtggatccta cgcttagcct gtttaagcca tcgttctcct
+       61 cggcccccag ccagcgcgta ttccgcgcat tcctccgagt gcgtatcgcg caaaccacaa
+      121 gatacctctc aacgactagc ggtgaaccac caagcttgac atacgtgccc cttcggaaac
+      181 gttattagtg gtcctgagtg gtacgtcccg agtatacggg gcagcgatag taacgctaca
+      241 aatagctagg cgaggttgcg atacctgaat gaatatccaa cagtggcaac gagacgctta
+      301 gaaagggaaa ctacatacca gttcaatccg ggatgacttc aaaagggtat gtttgttttg
+      361 aagcgaagct ttggttgtca ttcagttcct agagtttacg gcgctgatat ggctctagga
+      421 gtccagtgaa ttcgtcagca taagccccac atcgtaggaa attgcccggt cgtcggtcta
+      481 gcaaatgctc ggtaaactgg gagtgtacta acaccatgtc gtggtaaccc ggtggaccgg
+      541 ctactagaga catatttatt catgctcagt tgaacctgtt tcgagggggc cgagttaaca
+      601 taaagtgatt agtcacagcg cattaagata gaacagggat atagctcgtt gcatccataa
+      661 attgcccacc gtagggagaa cgccgttgga aaatgagagt taggcgatga gcggttgtcg
+      721 cccgcacaga caaaggatgc ctttataaat agtagcggcc ttgtctgcac cagacgtttg
+      781 tgggtcgacg tgctattcta gccaaaagca aaatgtatca tactacaggc aataggccct
+      841 atgctgacca aacttgggga cccttgcgcc ttctctctta cgcataacat gcataggtac
+      901 ctctactcat caggcagggc ggcgtgaggt cactatggct caagatgtgt acgactaaag
+      961 aaaggtttat gctccttccc caaggacgca tttgggactg ctacttgccc ctagcgaatt
+     1021 cactaggatt tttgtagaac catgagcgcc ctatccgata gcacagagac aatgctacaa
+     1081 gcaactgtgc atgcgctcga tcgccgtgca ttaatacgta ttatagcgta tcgtgtacgc
+     1141 taatatctta gtgcaccgca cgctggttgg atacaattcc gtgaaataat tcctgcttac
+     1201 acaggggctt tctggcgc
+//
--- /dev/null	Thu Jan 01 00:00:00 1970 +0000
+++ b/test-data/init/gibson_assembly_simulation/part_records/Frag_4b.gb	Fri May 16 11:32:06 2025 +0000
@@ -0,0 +1,32 @@
+LOCUS       Frag_4b                 1218 bp    DNA     circular UNK 01-JAN-1980
+DEFINITION  Frag_4b.
+ACCESSION   Frag_4b
+VERSION     Frag_4b
+KEYWORDS    .
+SOURCE      .
+  ORGANISM  .
+            .
+FEATURES             Location/Qualifiers
+ORIGIN
+        1 aggtaatgcg gcaggatccc gtggatccta cgcttagcct gttacccccc ccgttctcct
+       61 cggcccccag ccagcgcgta ttccgcgcat tcctccgagt gcgtatcgcg caaaccacaa
+      121 gatacctctc aacgactagc ggtgaaccac caagcttgac atacgtgccc cttcggaaac
+      181 gttattagtg gtcctgagtg gtacgtcccg agtatacggg gcagcgatag taacgctaca
+      241 aatagctaga ccgacgacaa acacagcact gaatatccaa cagtggcaac gagacgctta
+      301 gaaagggaaa ctacatacca gttcaatccg ggatgacttc aaaagggtat gtttgttttg
+      361 aagcgaagct ttggttgtca ttcagttcct agagtttacg gcgctgatat ggctctagga
+      421 gtccagtgaa ttcgtcagca taagccccac atcgtaggaa attgcccggt cgtcggtcta
+      481 gcaaatgctc ggtaaactgg gagtgtacta acaccatgtc gtggtaaccc ggtggaccgg
+      541 ctactagaga catatttatt catgctcagt tgaacctgtt tcgagggggc cgagttaaca
+      601 taaagtgatt agtcacagcg cattaagata gaacagggat atagctcgtt gcatccataa
+      661 attgcccacc gtagggagaa cgccgttgga aaatgagagt taggcgatga gcggttgtcg
+      721 cccgcacaga caaaggatgc ctttataaat agtagcggcc ttgtctgcac cagacgtttg
+      781 tgggtcgacg tgctattcta gccaaaagca aaatgtatca tactacaggc aataggccct
+      841 atgctgacca aacttgggga cccttgcgcc ttctctctta cgcataacat gcataggtac
+      901 ctctactcat caggcagggc ggcgtgaggt cactatggct caagatgtgt acgactaaag
+      961 aaaggtttat gctccttccc caaggacgca tttgggactg ctacttgccc ctagcgaatt
+     1021 cactaggatt tttgtagaac catgagcgcc ctatccgata gcacagagac aatgctacaa
+     1081 gcaactgtgc atgcgctcga tcgccgtgca ttaatacgta ttatagcgta tcgtgtacgc
+     1141 taatatctta gtgcaccgca cgctggttgg atacaattcc gtgaaataat tcctgcttac
+     1201 acaggggctt tctggcgc
+//
--- /dev/null	Thu Jan 01 00:00:00 1970 +0000
+++ b/test-data/init/gibson_assembly_simulation/part_records/Frag_4c.gb	Fri May 16 11:32:06 2025 +0000
@@ -0,0 +1,32 @@
+LOCUS       Frag_4c                 1218 bp    DNA     circular UNK 01-JAN-1980
+DEFINITION  Frag_4c.
+ACCESSION   Frag_4c
+VERSION     Frag_4c
+KEYWORDS    .
+SOURCE      .
+  ORGANISM  .
+            .
+FEATURES             Location/Qualifiers
+ORIGIN
+        1 aggtaatgcg gcaggatccc gtggatccta cgcttagcct gttagggggg gggttctcct
+       61 cggcccccag ccagcgcgta ttccgcgcat tcctccgagt gcgtatcgcg caaaccacaa
+      121 gatacctctc aacgactagc ggtgaaccac caagcttgac atacgtgccc cttcggaaac
+      181 gttattagtg gtcctgagtg gtacgtcccg agtatacggg gcagcgatag taacgctaca
+      241 aatagctaga ccgacgacaa acacagcact gaatatccaa cagtggcaac gagacgctta
+      301 gaaagggaaa ctacatacca gttcaatccg ggatgacttc aaaagggtat gtttgttttg
+      361 aagcgaagct ttggttgtca ttcagttcct agagtttacg gcgctgatat ggctctagga
+      421 gtccagtgaa ttcgtcagca taagccccac atcgtaggaa attgcccggt cgtcggtcta
+      481 gcaaatgctc ggtaaactgg gagtgtacta acaccatgtc gtggtaaccc ggtggaccgg
+      541 ctactagaga catatttatt catgctcagt tgaacctgtt tcgagggggc cgagttaaca
+      601 taaagtgatt agtcacagcg cattaagata gaacagggat atagctcgtt gcatccataa
+      661 attgcccacc gtagggagaa cgccgttgga aaatgagagt taggcgatga gcggttgtcg
+      721 cccgcacaga caaaggatgc ctttataaat agtagcggcc ttgtctgcac cagacgtttg
+      781 tgggtcgacg tgctattcta gccaaaagca aaatgtatca tactacaggc aataggccct
+      841 atgctgacca aacttgggga cccttgcgcc ttctctctta cgcataacat gcataggtac
+      901 ctctactcat caggcagggc ggcgtgaggt cactatggct caagatgtgt acgactaaag
+      961 aaaggtttat gctccttccc caaggacgca tttgggactg ctacttgccc ctagcgaatt
+     1021 cactaggatt tttgtagaac catgagcgcc ctatccgata gcacagagac aatgctacaa
+     1081 gcaactgtgc atgcgctcga tcgccgtgca ttaatacgta ttatagcgta tcgtgtacgc
+     1141 taatatctta gtgcaccgca cgctggttgg atacaattcc gtgaaataat tcctgcttac
+     1201 acaggggctt tctggcgc
+//
--- /dev/null	Thu Jan 01 00:00:00 1970 +0000
+++ b/test-data/init/gibson_assembly_simulation/part_records/Frag_5.gb	Fri May 16 11:32:06 2025 +0000
@@ -0,0 +1,35 @@
+LOCUS       Frag_5                  1428 bp    DNA     circular UNK 01-JAN-1980
+DEFINITION  Frag_5.
+ACCESSION   Frag_5
+VERSION     Frag_5
+KEYWORDS    .
+SOURCE      .
+  ORGANISM  .
+            .
+FEATURES             Location/Qualifiers
+ORIGIN
+        1 acaggggctt tctggcgcat ggctgtgtct ggatgtttgt gataagaggc tccatgaacc
+       61 cggcgggaaa tgaggggaaa ccccggggag caacgacact aagcctggca gttgttcaga
+      121 taggacgctt ttgtcagtgg gcggttttgc atccactaac tatcataaac gacacaacgt
+      181 cgaatgatca tcggcggttt gcatgtagag acagctcctg caacaccata ccggctcgtg
+      241 gaattacgct gtgcgccggc cctcattcga ttgtgtccag cgtcggcgcg aatgatgatt
+      301 gagatgtgct tcggctcaga gcgtgcacag gtagttctcc ccccttacct agctgatcca
+      361 gcaattccac gctggcccgc gcgtccttgg gtaacactgg atctgtaccc aaatacaccg
+      421 tcgtgattgt taactaccgt atggcggtta cgatcgagtg acactattat tagaccgcta
+      481 ctccaagtcc caacttttca tcgccataca gaagagaacg agaaagtcga agagttatag
+      541 cgtgtacact tctgattagc taacgaatcg atgcgtacag catactcgag caactttatg
+      601 ggtcgtctgt ctccttgtac cccgcttgac gaggatgtgt ttgtaggcgg cttggatatc
+      661 ggcagtgtat ccgcatggtc aaacacttta gcccgaccgg tgctcaaggt cgaaatccta
+      721 atatagattg ggataggacc cgtccattac taggcgacat tcgcagtcac gagcccgcac
+      781 ggggtgcctc aacacggtga cactcaattc gccggcactg agtacgacga tcgtgattgc
+      841 cataccgtca tgttttgtgt tacccctgat aagaagcgca gatatggcac gggggcagag
+      901 ggcggagtag acccatgcaa aactctagcc tctgggcagc atgatcgacg tagaacgccg
+      961 ttgtgactca ctagtttcag ttatgatgtt cagccaagaa tcctccattt tgacgtgaac
+     1021 cttctccctt tacaccttga agctgcaata ttaagtcgac cctttaagtt gccttgtctt
+     1081 ggtctagagc ccgcagctca ccgataaaat gagcagtcaa ttttagcggc ggttgtccag
+     1141 gttacatgca ctttgggctg gaaccgcgtt acgtttggag tacttagaag tgtcgtaggc
+     1201 ataggagagc cgaaacttga tattgggtct agttagtgct ctaccccgct tcggatccgt
+     1261 aatagtgatg ttgcatgaga cgcttgcctc aaggcgacat acggtggcgg ttgctggaaa
+     1321 tgacgcccca ccccgtgata atttggggac gagccgcacg ataacttctg ccagcgaccg
+     1381 cccctcccac gtccgatggt gattccgaac tccacctgcg tctatcgt
+//
--- /dev/null	Thu Jan 01 00:00:00 1970 +0000
+++ b/test-data/init/gibson_assembly_simulation/part_records/Frag_5b.gb	Fri May 16 11:32:06 2025 +0000
@@ -0,0 +1,35 @@
+LOCUS       Frag_5b                 1428 bp    DNA     circular UNK 01-JAN-1980
+DEFINITION  Frag_5b.
+ACCESSION   Frag_5b
+VERSION     Frag_5b
+KEYWORDS    .
+SOURCE      .
+  ORGANISM  .
+            .
+FEATURES             Location/Qualifiers
+ORIGIN
+        1 acaggggctt tctggcgcat ggctgtgtct ggaaaaaaaa aaaaaaaaaa aacatgaacc
+       61 cggcgggaaa tgaggggaaa ccccggggag caacgacact aagcctggca gttgttcaga
+      121 taggacgctt ttgtcagtgg gcggttttgc atccactaac tatcataaac gacacaacgt
+      181 cgaatgatca tcggcggttt gcatgtagag acagctcctg caacaccata ccggctcgtg
+      241 gaattacgct gtgcgccggc cctcattcga ttgtgtccag cgtcggcgcg aatgatgatt
+      301 gagatgtgct tcggctcaga gcgtgcacag gtagttctcc ccccttacct agctgatcca
+      361 gcaattccac gctggcccgc gcgtccttgg gtaacactgg atctgtaccc aaatacaccg
+      421 tcgtgattgt taactaccgt atggcggtta cgatcgagtg acactattat tagaccgcta
+      481 ctccaagtcc caacttttca tcgccataca gaagagaacg agaaagtcga agagttatag
+      541 cgtgtacact tctgattagc taacgaatcg atgcgtacag catactcgag caactttatg
+      601 ggtcgtctgt ctccttgtac cccgcttgac gaggatgtgt ttgtaggcgg cttggatatc
+      661 ggcagtgtat ccgcatggtc aaacacttta gcccgaccgg tgctcaaggt cgaaatccta
+      721 atatagattg ggataggacc cgtccattac taggcgacat tcgcagtcac gagcccgcac
+      781 ggggtgcctc aacacggtga cactcaattc gccggcactg agtacgacga tcgtgattgc
+      841 cataccgtca tgttttgtgt tacccctgat aagaagcgca gatatggcac gggggcagag
+      901 ggcggagtag acccatgcaa aactctagcc tctgggcagc atgatcgacg tagaacgccg
+      961 ttgtgactca ctagtttcag ttatgatgtt cagccaagaa tcctccattt tgacgtgaac
+     1021 cttctccctt tacaccttga agctgcaata ttaagtcgac cctttaagtt gccttgtctt
+     1081 ggtctagagc ccgcagctca ccgataaaat gagcagtcaa ttttagcggc ggttgtccag
+     1141 gttacatgca ctttgggctg gaaccgcgtt acgtttggag tacttagaag tgtcgtaggc
+     1201 ataggagagc cgaaacttga tattgggtct agttagtgct ctaccccgct tcggatccgt
+     1261 aatagtgatg ttgcatgaga cgcttgcctc aaggcgacat acggtggcgg ttgctggaaa
+     1321 tgacgcccca ccccgtgata atttggggac gagccgcacg ataacttctg ccagcgaccg
+     1381 cccctcccac gtccgatggt gattccgaac tccacctgcg tctatcgt
+//