diff cloning_simulation.py @ 3:044d36066cb3 draft

planemo upload for repository https://github.com/Edinburgh-Genome-Foundry/DnaCauldron/tree/master commit 6ae809b563b40bcdb6be2e74fe2a84ddad5484ae

--- a/cloning_simulation.py	Fri May 16 11:32:06 2025 +0000
+++ b/cloning_simulation.py	Fri May 16 12:40:59 2025 +0000
@@ -111,10 +111,9 @@
         #print("Files in the zip archive:")
         #for info in zipf.infolist():
             #print(info.filename)
-    with zipfile.ZipFile(output_simulation, 'r') as zipf:
         for member in zipf.namelist():
             # Only extract actual files inside 'all_construct_records/' (not subfolders)
-            if member.startswith("all_construct_records/") and not member.endswith("/"):
+            if member.startswith("assambly_simulation/all_construct_records/") and not member.endswith("/"):
                 # Get the file name only (strip folder path)
                 filename = os.path.basename(member)
                 if not filename: