comparison cloning_simulation.py @ 3:044d36066cb3 draft

planemo upload for repository https://github.com/Edinburgh-Genome-Foundry/DnaCauldron/tree/master commit 6ae809b563b40bcdb6be2e74fe2a84ddad5484ae

2:3171db614963

                arcname = os.path.relpath(full_path, outdir_simulation)
                zipf.write(full_path, arcname)
        #print("Files in the zip archive:")
        #for info in zipf.infolist():
            #print(info.filename)
    with zipfile.ZipFile(output_simulation, 'r') as zipf:
        for member in zipf.namelist():
            # Only extract actual files inside 'all_construct_records/' (not subfolders)
            if member.startswith("all_construct_records/") and not member.endswith("/"):
                # Get the file name only (strip folder path)
                filename = os.path.basename(member)
                if not filename:
                    continue  # skip any edge cases

3:044d36066cb3

                arcname = os.path.relpath(full_path, outdir_simulation)
                zipf.write(full_path, arcname)
        #print("Files in the zip archive:")
        #for info in zipf.infolist():
            #print(info.filename)
        for member in zipf.namelist():
            # Only extract actual files inside 'all_construct_records/' (not subfolders)
            if member.startswith("assambly_simulation/all_construct_records/") and not member.endswith("/"):
                # Get the file name only (strip folder path)
                filename = os.path.basename(member)
                if not filename:
                    continue  # skip any edge cases