comparison cloning_simulation.py @ 12:556649b3f9bb draft

planemo upload for repository https://github.com/Edinburgh-Genome-Foundry/DnaCauldron/tree/master commit 6ae809b563b40bcdb6be2e74fe2a84ddad5484ae

11:be6889ab2df8

    else:
        raise ValueError(f"Unsupported assembly type: {assembly_type}")
    
    new_csvname = "assambly.csv"
    os.rename(csv_file, new_csvname)

    assembly_plan = dnacauldron.AssemblyPlan.from_spreadsheet(
        name="auto_from_filename",
        path=new_csvname,
        dataframe=None,
        header=[0],
        assembly_class=assembly_class
    )
    if enzyme != 'auto':
        for assembly in assembly_plan.assemblies:
            assembly.enzyme = enzyme

12:556649b3f9bb

    else:
        raise ValueError(f"Unsupported assembly type: {assembly_type}")
    
    new_csvname = "assambly.csv"
    os.rename(csv_file, new_csvname)
    print (df)

    assembly_plan = dnacauldron.AssemblyPlan.from_spreadsheet(
        name="auto_from_filename",
        path=new_csvname,
        dataframe=None,
        header=None,
        assembly_class=assembly_class
    )
    if enzyme != 'auto':
        for assembly in assembly_plan.assemblies:
            assembly.enzyme = enzyme