annotate g_f0.xml @ 5:0026cd452d0e draft default tip

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date Sat, 11 Mar 2017 21:37:57 -0500
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1 <tool id="g_f0" name="Compute Pitch" version="0.01">
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2 <description>using wrassp ksvF0 pitch tracker</description>
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3
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4 <requirements>
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5 <requirement type="package" version="0.1.4">r-wrassp</requirement>
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6 </requirements>
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7
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8 <command interpreter="bash">
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9 r_wrapper.sh $__tool_directory__/g_f0.R --args ${wavfile} ${output}
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10 ${beginTime} ${endTime} ${windowShift} ${gender} ${maxF} ${minF} ${minAmp} ${maxZCR}
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11 </command>
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12
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13 <stdio>
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14 <regex match="Linux: unexpected operator"
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15 source="stderr"
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16 level="warning"
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17 description="conda r-base bash bug" />
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18 </stdio>
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19
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20 <inputs>
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21 <param name="wavfile" type="data" format="wav" label="Audio File" help="Audio file in WAV format"/>
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22 <param name="beginTime" type="integer" value="0" label="Start time for analysis (s)"/>
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23 <param name="endTime" type="integer" value="0" label="End Time for analysis (s) 0 means end of signal"/>
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24 <param name="windowShift" type="integer" value="5" label="Window Shift (ms)" help="set analysis window shift to dur ms"/>
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25 <param name="gender" type="select" label="Speaker Gender">
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26 <option value="m" selected="true">Male</option>
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27 <option value="f">Female</option>
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28 <option value="u">Unknown</option>
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29 </param>
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30 <param name="maxF" type="integer" value="500" label="Maximum F0 Frequency (Hz)"/>
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31 <param name="minF" type="integer" value="50" label="Minimum F0 Frequency (Hz)"/>
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32 <param name="minAmp" type="integer" value="100" label="Amplitude threshold for voiced samples"/>
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33 <param name="maxZCR" type="integer" value="3000" label="Maximum zero crossing rate in Hz (for voicing detection)"/>
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34 </inputs>
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35
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36 <outputs>
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37 <data name="output" format="tabular" label="#echo $wavfile.element_identifier.replace('wav', 'f0') #" />
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38 </outputs>
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40
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41 <tests>
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42 <test>
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43 <param name="wavfile" value="1_1119_2_22_001-ch6-speaker16.wav"/>
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44 <output name="output" file="1_1119_2_22_001-F0.dat"/>
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45 </test>
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46 </tests>
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47
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48 <help>F0 analysis of the signal using the K. Schaefer-Vincent periodicity detection algortithm.
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49 </help>
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50
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51 <citations>
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52 <citation type='bibtex'>
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53 @Manual{,
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54 title = {wrassp: an R wrapper to the ASSP Library},
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55 author = {Lasse Bombien and Raphael Winkelmann and Michel
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56 Scheffers},
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57 year = {2016},
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58 note = {R package version 0.1.4},
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59 }
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60 </citation>
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61 </citations>
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62 </tool>