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<tool id="query_textgrids" name="Search TextGrid" version="0.01" force_history_refresh="True">
    <description>to find matching segments</description>

    <requirements>
        <requirement type="package" version="1.4.2">tgt</requirement>
    </requirements>

    <command interpreter="python">
        query_textgrids.py --textgrid "${",".join(map(str, $textgrid))}" --identifier "${",".join(map(str, [t.element_identifier for t in $textgrid]))}" --tier $tier --regex '$regex' --output_path $output
    </command>

    <inputs>
        <param name="textgrid" type="data" multiple="true" format="textgrid" label="TextGrid" help="The TextGrid file"/>
        <param name="tier" type="text" label="Tier name" help="e.g MAU, ORT"/>
        <param name="regex" type="text" label="Regular Expressoion to match segments">
            <sanitizer>
              <valid initial="string.printable">
               <remove value="&apos;"/>
              </valid>
              <mapping initial="none">
                <add source="&apos;" target="__sq__"/>
              </mapping>
            </sanitizer>
        </param>
    </inputs>

    <outputs>
        <data format="tabular" name="output" label="Query Results" />
    </outputs>


    <tests>
        <test>
            <param name="tier" value="MAU"/>
            <param name="regex" value=".*"/>
            <param name="textgrid" value="textgrids/1_1308_2_22_020-ch6-speaker16.TextGrid_TextGrid"/>
            <output name="output">
                <assert_contents>
                    <has_text text="start"/>
                    <has_text text="3:"/>
                    <has_text text="0.55"/>
                    <has_text text="1_1308_2_22_020-ch6-speaker16.TextGrid_TextGrid"/>
                </assert_contents>
            </output>
        </test>
        <test>
            <param name="tier" value="MAU"/>
            <param name="regex" value="(a|e|{|}|6|3|i|U|O|I)"/>
            <param name="textgrid" value="textgrids/1_1308_2_22_020-ch6-speaker16.TextGrid_TextGrid"/>
            <output name="output">
                <assert_contents>
                    <has_text text="start"/>
                    <has_text text="3:"/>
                    <has_text text="0.81"/>
                    <has_text text="1_1308_2_22_020-ch6-speaker16.TextGrid_TextGrid"/>
                </assert_contents>
            </output>
        </test>
    </tests>

    <help>Search for segments within a TextGrid file. Outputs a table with start, end, duration,
    label and filename.  Use a regular expression to match segments, eg. to match a or O or I
    use (a|O|I), for any SAMPA-AU short vowel try (a|e|{|}|6|3|i|U|O|I) .</help>

    <citations>
        <citation type='bibtex'>
            @inproceedings{Buschmeir2013,
            author = {{Hendrik Buschmeier}, Marcin Wlodarczak},
            booktitle = {Tagungsband der 24. Konferenz zur Elektronischen Sprachsignalverarbeitung (ESSV 2013)},
            pages = {152--157},
            title = {{TextGridTools: A TextGrid Processing and Analysis Toolkit for Python}},
            year = {2013}
            }
        </citation>
    </citations>
</tool>