annotate g_stemmer.xml @ 3:0df72a8ab095 draft default tip

planemo upload for repository https://github.com/Alveo/alveo-galaxy-tools commit f2432aaedd36ae7662873623d8861d0982dffdd2
author stevecassidy
date Mon, 20 Nov 2017 22:52:11 -0500
parents e991d4e60c17
children
Ignore whitespace changes - Everywhere: Within whitespace: At end of lines:
rev   line source
0
e991d4e60c17 planemo upload commit 0203cb3a0b40d9348674b2b098af805e2986abca-dirty
stevecassidy
parents:
diff changeset
1 <tool id="Stemmer" name="Stemmer" version="1.0">
e991d4e60c17 planemo upload commit 0203cb3a0b40d9348674b2b098af805e2986abca-dirty
stevecassidy
parents:
diff changeset
2 <description>Takes a list of tokens and generates a list of word stems using one of the stemming algorithms</description>
e991d4e60c17 planemo upload commit 0203cb3a0b40d9348674b2b098af805e2986abca-dirty
stevecassidy
parents:
diff changeset
3
e991d4e60c17 planemo upload commit 0203cb3a0b40d9348674b2b098af805e2986abca-dirty
stevecassidy
parents:
diff changeset
4 <requirements>
e991d4e60c17 planemo upload commit 0203cb3a0b40d9348674b2b098af805e2986abca-dirty
stevecassidy
parents:
diff changeset
5 <requirement type="package" version="3.2.1">nltk</requirement>
e991d4e60c17 planemo upload commit 0203cb3a0b40d9348674b2b098af805e2986abca-dirty
stevecassidy
parents:
diff changeset
6 </requirements>
e991d4e60c17 planemo upload commit 0203cb3a0b40d9348674b2b098af805e2986abca-dirty
stevecassidy
parents:
diff changeset
7
e991d4e60c17 planemo upload commit 0203cb3a0b40d9348674b2b098af805e2986abca-dirty
stevecassidy
parents:
diff changeset
8 <command interpreter="python">
e991d4e60c17 planemo upload commit 0203cb3a0b40d9348674b2b098af805e2986abca-dirty
stevecassidy
parents:
diff changeset
9 g_stemmer.py --input $input1 --output $tab_file --stemmer $stemming_algorithm
e991d4e60c17 planemo upload commit 0203cb3a0b40d9348674b2b098af805e2986abca-dirty
stevecassidy
parents:
diff changeset
10 </command>
e991d4e60c17 planemo upload commit 0203cb3a0b40d9348674b2b098af805e2986abca-dirty
stevecassidy
parents:
diff changeset
11
e991d4e60c17 planemo upload commit 0203cb3a0b40d9348674b2b098af805e2986abca-dirty
stevecassidy
parents:
diff changeset
12 <inputs>
e991d4e60c17 planemo upload commit 0203cb3a0b40d9348674b2b098af805e2986abca-dirty
stevecassidy
parents:
diff changeset
13 <param name="input1" type="data" format="txt" label="Select a suitable input file from your history"/>
e991d4e60c17 planemo upload commit 0203cb3a0b40d9348674b2b098af805e2986abca-dirty
stevecassidy
parents:
diff changeset
14 <param name="stemming_algorithm" type="select" label="Select the stemming algorithm to be used">
e991d4e60c17 planemo upload commit 0203cb3a0b40d9348674b2b098af805e2986abca-dirty
stevecassidy
parents:
diff changeset
15 <option value="lancaster">Lancaster Stemmer</option>
e991d4e60c17 planemo upload commit 0203cb3a0b40d9348674b2b098af805e2986abca-dirty
stevecassidy
parents:
diff changeset
16 <option value="porter">Porter Stemmer</option>
e991d4e60c17 planemo upload commit 0203cb3a0b40d9348674b2b098af805e2986abca-dirty
stevecassidy
parents:
diff changeset
17 <option value="snowball">Snowball English Stemmer</option>
e991d4e60c17 planemo upload commit 0203cb3a0b40d9348674b2b098af805e2986abca-dirty
stevecassidy
parents:
diff changeset
18 </param>
e991d4e60c17 planemo upload commit 0203cb3a0b40d9348674b2b098af805e2986abca-dirty
stevecassidy
parents:
diff changeset
19 <param name="job_name" type="text" size="25"
e991d4e60c17 planemo upload commit 0203cb3a0b40d9348674b2b098af805e2986abca-dirty
stevecassidy
parents:
diff changeset
20 label="Supply a name for the outputs to remind you what they contain" value="Stemmer"/>
e991d4e60c17 planemo upload commit 0203cb3a0b40d9348674b2b098af805e2986abca-dirty
stevecassidy
parents:
diff changeset
21
e991d4e60c17 planemo upload commit 0203cb3a0b40d9348674b2b098af805e2986abca-dirty
stevecassidy
parents:
diff changeset
22 </inputs>
e991d4e60c17 planemo upload commit 0203cb3a0b40d9348674b2b098af805e2986abca-dirty
stevecassidy
parents:
diff changeset
23 <outputs>
e991d4e60c17 planemo upload commit 0203cb3a0b40d9348674b2b098af805e2986abca-dirty
stevecassidy
parents:
diff changeset
24 <data format="tabular" name="tab_file" label="${job_name}"/>
e991d4e60c17 planemo upload commit 0203cb3a0b40d9348674b2b098af805e2986abca-dirty
stevecassidy
parents:
diff changeset
25
e991d4e60c17 planemo upload commit 0203cb3a0b40d9348674b2b098af805e2986abca-dirty
stevecassidy
parents:
diff changeset
26 </outputs>
e991d4e60c17 planemo upload commit 0203cb3a0b40d9348674b2b098af805e2986abca-dirty
stevecassidy
parents:
diff changeset
27 <options refresh="True"/>
e991d4e60c17 planemo upload commit 0203cb3a0b40d9348674b2b098af805e2986abca-dirty
stevecassidy
parents:
diff changeset
28 <help>
e991d4e60c17 planemo upload commit 0203cb3a0b40d9348674b2b098af805e2986abca-dirty
stevecassidy
parents:
diff changeset
29 <![CDATA[
e991d4e60c17 planemo upload commit 0203cb3a0b40d9348674b2b098af805e2986abca-dirty
stevecassidy
parents:
diff changeset
30
e991d4e60c17 planemo upload commit 0203cb3a0b40d9348674b2b098af805e2986abca-dirty
stevecassidy
parents:
diff changeset
31 Input is a list of tokens, uses one of the NLTK stemming algorithms to generate a list of word stems.
e991d4e60c17 planemo upload commit 0203cb3a0b40d9348674b2b098af805e2986abca-dirty
stevecassidy
parents:
diff changeset
32
e991d4e60c17 planemo upload commit 0203cb3a0b40d9348674b2b098af805e2986abca-dirty
stevecassidy
parents:
diff changeset
33 ]]>
e991d4e60c17 planemo upload commit 0203cb3a0b40d9348674b2b098af805e2986abca-dirty
stevecassidy
parents:
diff changeset
34
e991d4e60c17 planemo upload commit 0203cb3a0b40d9348674b2b098af805e2986abca-dirty
stevecassidy
parents:
diff changeset
35 </help>
e991d4e60c17 planemo upload commit 0203cb3a0b40d9348674b2b098af805e2986abca-dirty
stevecassidy
parents:
diff changeset
36 </tool>