annotate maus.xml @ 6:28df10f22b51 draft default tip

planemo upload commit 72cee9103c0ae4acb5794afaed179bea2c729f2c-dirty
author stevecassidy
date Sat, 11 Mar 2017 21:38:41 -0500
parents 7095d483ca4a
children
Ignore whitespace changes - Everywhere: Within whitespace: At end of lines:
rev   line source
0
d4c27fdc928b planemo upload commit 7b5663b41b2dc11f9e375b8f386bc31855800bcf-dirty
stevecassidy
parents:
diff changeset
1 <tool id="maus_bpf" name="MAUS Align" version="0.01" force_history_refresh="True">
d4c27fdc928b planemo upload commit 7b5663b41b2dc11f9e375b8f386bc31855800bcf-dirty
stevecassidy
parents:
diff changeset
2 <description>from BPF transcription</description>
d4c27fdc928b planemo upload commit 7b5663b41b2dc11f9e375b8f386bc31855800bcf-dirty
stevecassidy
parents:
diff changeset
3
d4c27fdc928b planemo upload commit 7b5663b41b2dc11f9e375b8f386bc31855800bcf-dirty
stevecassidy
parents:
diff changeset
4 <requirements>
d4c27fdc928b planemo upload commit 7b5663b41b2dc11f9e375b8f386bc31855800bcf-dirty
stevecassidy
parents:
diff changeset
5 <container type="docker">stevecassidy/maus</container>
d4c27fdc928b planemo upload commit 7b5663b41b2dc11f9e375b8f386bc31855800bcf-dirty
stevecassidy
parents:
diff changeset
6 </requirements>
d4c27fdc928b planemo upload commit 7b5663b41b2dc11f9e375b8f386bc31855800bcf-dirty
stevecassidy
parents:
diff changeset
7
d4c27fdc928b planemo upload commit 7b5663b41b2dc11f9e375b8f386bc31855800bcf-dirty
stevecassidy
parents:
diff changeset
8 <command>
d4c27fdc928b planemo upload commit 7b5663b41b2dc11f9e375b8f386bc31855800bcf-dirty
stevecassidy
parents:
diff changeset
9 ln -s "${signal}" input.wav &amp;&amp;
2
c87ee3aec57b planemo upload commit e7b3a927f5f798f0a9c9a51b62bc8afa5f2c1dab-dirty
stevecassidy
parents: 0
diff changeset
10 /home/maus/maus OUTFORMAT=TextGrid LANGUAGE=$language
0
d4c27fdc928b planemo upload commit 7b5663b41b2dc11f9e375b8f386bc31855800bcf-dirty
stevecassidy
parents:
diff changeset
11 BPF=$bpf INSKANTEXTGRID=$inskantextgrid INSORTTEXTGRID=$insorttextgrid
d4c27fdc928b planemo upload commit 7b5663b41b2dc11f9e375b8f386bc31855800bcf-dirty
stevecassidy
parents:
diff changeset
12 MODUS=$modus MAUSSHIFT=$mausshift MINPAUSLEN=$minpauslen WEIGHT=$weight
d4c27fdc928b planemo upload commit 7b5663b41b2dc11f9e375b8f386bc31855800bcf-dirty
stevecassidy
parents:
diff changeset
13 INSPROB=$insprob NOINITIALFINALSILENCE=$noinitialfinalsilence OUTSYMBOL=$outsymbol
d4c27fdc928b planemo upload commit 7b5663b41b2dc11f9e375b8f386bc31855800bcf-dirty
stevecassidy
parents:
diff changeset
14 OUT=$output SIGNAL=input.wav
d4c27fdc928b planemo upload commit 7b5663b41b2dc11f9e375b8f386bc31855800bcf-dirty
stevecassidy
parents:
diff changeset
15 </command>
d4c27fdc928b planemo upload commit 7b5663b41b2dc11f9e375b8f386bc31855800bcf-dirty
stevecassidy
parents:
diff changeset
16
d4c27fdc928b planemo upload commit 7b5663b41b2dc11f9e375b8f386bc31855800bcf-dirty
stevecassidy
parents:
diff changeset
17 <inputs>
d4c27fdc928b planemo upload commit 7b5663b41b2dc11f9e375b8f386bc31855800bcf-dirty
stevecassidy
parents:
diff changeset
18 <param name="signal" type="data" format="wav" label="Audio File"/>
d4c27fdc928b planemo upload commit 7b5663b41b2dc11f9e375b8f386bc31855800bcf-dirty
stevecassidy
parents:
diff changeset
19 <param name="bpf" type="data" format="par" label="BPF File" help="Orthographic Transcript as BPF"/>
d4c27fdc928b planemo upload commit 7b5663b41b2dc11f9e375b8f386bc31855800bcf-dirty
stevecassidy
parents:
diff changeset
20 <param name="language" type="select" label="Language">
d4c27fdc928b planemo upload commit 7b5663b41b2dc11f9e375b8f386bc31855800bcf-dirty
stevecassidy
parents:
diff changeset
21 <option value="aus">Australian English</option>
d4c27fdc928b planemo upload commit 7b5663b41b2dc11f9e375b8f386bc31855800bcf-dirty
stevecassidy
parents:
diff changeset
22 <option value="sampa">SAMPA</option>
d4c27fdc928b planemo upload commit 7b5663b41b2dc11f9e375b8f386bc31855800bcf-dirty
stevecassidy
parents:
diff changeset
23 <option value="deu">Germa</option>
d4c27fdc928b planemo upload commit 7b5663b41b2dc11f9e375b8f386bc31855800bcf-dirty
stevecassidy
parents:
diff changeset
24 <option value="gsw-CH">Swiss German</option>
d4c27fdc928b planemo upload commit 7b5663b41b2dc11f9e375b8f386bc31855800bcf-dirty
stevecassidy
parents:
diff changeset
25 <option value="eng">British English</option>
d4c27fdc928b planemo upload commit 7b5663b41b2dc11f9e375b8f386bc31855800bcf-dirty
stevecassidy
parents:
diff changeset
26 <option value="fin">Finnish</option>
d4c27fdc928b planemo upload commit 7b5663b41b2dc11f9e375b8f386bc31855800bcf-dirty
stevecassidy
parents:
diff changeset
27 <option value="fra">French</option>
d4c27fdc928b planemo upload commit 7b5663b41b2dc11f9e375b8f386bc31855800bcf-dirty
stevecassidy
parents:
diff changeset
28 <option value="eng-US">US English</option>
d4c27fdc928b planemo upload commit 7b5663b41b2dc11f9e375b8f386bc31855800bcf-dirty
stevecassidy
parents:
diff changeset
29 <option value="nld">Dutch</option>
d4c27fdc928b planemo upload commit 7b5663b41b2dc11f9e375b8f386bc31855800bcf-dirty
stevecassidy
parents:
diff changeset
30 <option value="spa">Spanish</option>
d4c27fdc928b planemo upload commit 7b5663b41b2dc11f9e375b8f386bc31855800bcf-dirty
stevecassidy
parents:
diff changeset
31 <option value="ita">Italian</option>
d4c27fdc928b planemo upload commit 7b5663b41b2dc11f9e375b8f386bc31855800bcf-dirty
stevecassidy
parents:
diff changeset
32 <option value="por">Portugese</option>
d4c27fdc928b planemo upload commit 7b5663b41b2dc11f9e375b8f386bc31855800bcf-dirty
stevecassidy
parents:
diff changeset
33 <option value="hun">Hungarian</option>
d4c27fdc928b planemo upload commit 7b5663b41b2dc11f9e375b8f386bc31855800bcf-dirty
stevecassidy
parents:
diff changeset
34 <option value="ekk">Estonian</option>
d4c27fdc928b planemo upload commit 7b5663b41b2dc11f9e375b8f386bc31855800bcf-dirty
stevecassidy
parents:
diff changeset
35 <option value="pol">Polish</option>
d4c27fdc928b planemo upload commit 7b5663b41b2dc11f9e375b8f386bc31855800bcf-dirty
stevecassidy
parents:
diff changeset
36 <option value="nze">NZ English</option>
d4c27fdc928b planemo upload commit 7b5663b41b2dc11f9e375b8f386bc31855800bcf-dirty
stevecassidy
parents:
diff changeset
37 <option value="kat">Georgian</option>
d4c27fdc928b planemo upload commit 7b5663b41b2dc11f9e375b8f386bc31855800bcf-dirty
stevecassidy
parents:
diff changeset
38 <option value="rus">Russian</option>
d4c27fdc928b planemo upload commit 7b5663b41b2dc11f9e375b8f386bc31855800bcf-dirty
stevecassidy
parents:
diff changeset
39 </param>
d4c27fdc928b planemo upload commit 7b5663b41b2dc11f9e375b8f386bc31855800bcf-dirty
stevecassidy
parents:
diff changeset
40 <param name="insorttextgrid" type="boolean" value="true" label="Add Orthography to TextGrid output"/>
d4c27fdc928b planemo upload commit 7b5663b41b2dc11f9e375b8f386bc31855800bcf-dirty
stevecassidy
parents:
diff changeset
41 <param name="inskantextgrid" type="boolean" value="true" label="Add canonical phonemic transcription to TextGrid output"/>
d4c27fdc928b planemo upload commit 7b5663b41b2dc11f9e375b8f386bc31855800bcf-dirty
stevecassidy
parents:
diff changeset
42 <param name="modus" type="select" label="Mode">
d4c27fdc928b planemo upload commit 7b5663b41b2dc11f9e375b8f386bc31855800bcf-dirty
stevecassidy
parents:
diff changeset
43 <option value="standard">Normal MAUS technique</option>
d4c27fdc928b planemo upload commit 7b5663b41b2dc11f9e375b8f386bc31855800bcf-dirty
stevecassidy
parents:
diff changeset
44 <option value="align">Do not model pronunciation, align the given phonemic transcript</option>
d4c27fdc928b planemo upload commit 7b5663b41b2dc11f9e375b8f386bc31855800bcf-dirty
stevecassidy
parents:
diff changeset
45 <option value="bigram">Use phone recognition constrained by a Bigram model</option>
d4c27fdc928b planemo upload commit 7b5663b41b2dc11f9e375b8f386bc31855800bcf-dirty
stevecassidy
parents:
diff changeset
46 </param>
d4c27fdc928b planemo upload commit 7b5663b41b2dc11f9e375b8f386bc31855800bcf-dirty
stevecassidy
parents:
diff changeset
47 <param name="mausshift" type="integer" value="10" label="Shift found segment boundaries by this many milliseconds"/>
d4c27fdc928b planemo upload commit 7b5663b41b2dc11f9e375b8f386bc31855800bcf-dirty
stevecassidy
parents:
diff changeset
48 <param name="minpauslen" type="integer" label="supress inter-word silence less than n*10ms, ie. enter 5 here to suppress silence less than 50ms" value='5'/>
d4c27fdc928b planemo upload commit 7b5663b41b2dc11f9e375b8f386bc31855800bcf-dirty
stevecassidy
parents:
diff changeset
49 <param name="weight" type="float" value="7.0" label="relative weight given to statistical model, higher values will favour the canonical pronunciation"/>
d4c27fdc928b planemo upload commit 7b5663b41b2dc11f9e375b8f386bc31855800bcf-dirty
stevecassidy
parents:
diff changeset
50 <param name="insprob" type="float" value="0.0" label="Insertion probability - higher values will reduce the probability of deletions of phonemic segments"/>
d4c27fdc928b planemo upload commit 7b5663b41b2dc11f9e375b8f386bc31855800bcf-dirty
stevecassidy
parents:
diff changeset
51 <param name="noinitialfinalsilence" type="select" label="Suppress initial and final silence">
d4c27fdc928b planemo upload commit 7b5663b41b2dc11f9e375b8f386bc31855800bcf-dirty
stevecassidy
parents:
diff changeset
52 <option value="no">No</option>
d4c27fdc928b planemo upload commit 7b5663b41b2dc11f9e375b8f386bc31855800bcf-dirty
stevecassidy
parents:
diff changeset
53 <option value="yes">Yes</option>
d4c27fdc928b planemo upload commit 7b5663b41b2dc11f9e375b8f386bc31855800bcf-dirty
stevecassidy
parents:
diff changeset
54 </param>
d4c27fdc928b planemo upload commit 7b5663b41b2dc11f9e375b8f386bc31855800bcf-dirty
stevecassidy
parents:
diff changeset
55 <param name="outsymbol" type="select" label="Output symbols">
d4c27fdc928b planemo upload commit 7b5663b41b2dc11f9e375b8f386bc31855800bcf-dirty
stevecassidy
parents:
diff changeset
56 <option value="sampa">SAMPA</option>
d4c27fdc928b planemo upload commit 7b5663b41b2dc11f9e375b8f386bc31855800bcf-dirty
stevecassidy
parents:
diff changeset
57 <option value="ipa">IPA (utf-8)</option>
d4c27fdc928b planemo upload commit 7b5663b41b2dc11f9e375b8f386bc31855800bcf-dirty
stevecassidy
parents:
diff changeset
58 <option value="manner">IPA manner class</option>
d4c27fdc928b planemo upload commit 7b5663b41b2dc11f9e375b8f386bc31855800bcf-dirty
stevecassidy
parents:
diff changeset
59 <option value="place">IPA place of articulation</option>
d4c27fdc928b planemo upload commit 7b5663b41b2dc11f9e375b8f386bc31855800bcf-dirty
stevecassidy
parents:
diff changeset
60 </param>
d4c27fdc928b planemo upload commit 7b5663b41b2dc11f9e375b8f386bc31855800bcf-dirty
stevecassidy
parents:
diff changeset
61 </inputs>
d4c27fdc928b planemo upload commit 7b5663b41b2dc11f9e375b8f386bc31855800bcf-dirty
stevecassidy
parents:
diff changeset
62
d4c27fdc928b planemo upload commit 7b5663b41b2dc11f9e375b8f386bc31855800bcf-dirty
stevecassidy
parents:
diff changeset
63 <outputs>
6
28df10f22b51 planemo upload commit 72cee9103c0ae4acb5794afaed179bea2c729f2c-dirty
stevecassidy
parents: 5
diff changeset
64 <data name="output" format="textgrid" label="#echo $signal.element_identifier.replace('.wav', '.TextGrid') #" />
0
d4c27fdc928b planemo upload commit 7b5663b41b2dc11f9e375b8f386bc31855800bcf-dirty
stevecassidy
parents:
diff changeset
65 </outputs>
d4c27fdc928b planemo upload commit 7b5663b41b2dc11f9e375b8f386bc31855800bcf-dirty
stevecassidy
parents:
diff changeset
66
d4c27fdc928b planemo upload commit 7b5663b41b2dc11f9e375b8f386bc31855800bcf-dirty
stevecassidy
parents:
diff changeset
67
d4c27fdc928b planemo upload commit 7b5663b41b2dc11f9e375b8f386bc31855800bcf-dirty
stevecassidy
parents:
diff changeset
68 <tests>
d4c27fdc928b planemo upload commit 7b5663b41b2dc11f9e375b8f386bc31855800bcf-dirty
stevecassidy
parents:
diff changeset
69 <test>
d4c27fdc928b planemo upload commit 7b5663b41b2dc11f9e375b8f386bc31855800bcf-dirty
stevecassidy
parents:
diff changeset
70 <param name="signal" type="wav" value="1_1119_2_22_001-ch6-speaker16.wav"/>
2
c87ee3aec57b planemo upload commit e7b3a927f5f798f0a9c9a51b62bc8afa5f2c1dab-dirty
stevecassidy
parents: 0
diff changeset
71 <param name="bpf" value="1_1119_2_22_001.par"/>
0
d4c27fdc928b planemo upload commit 7b5663b41b2dc11f9e375b8f386bc31855800bcf-dirty
stevecassidy
parents:
diff changeset
72 <param name="language" value="aus"/>
d4c27fdc928b planemo upload commit 7b5663b41b2dc11f9e375b8f386bc31855800bcf-dirty
stevecassidy
parents:
diff changeset
73 <param name="insorttextgrid" value="true" />
d4c27fdc928b planemo upload commit 7b5663b41b2dc11f9e375b8f386bc31855800bcf-dirty
stevecassidy
parents:
diff changeset
74 <param name="inskantextgrid" value="true" />
d4c27fdc928b planemo upload commit 7b5663b41b2dc11f9e375b8f386bc31855800bcf-dirty
stevecassidy
parents:
diff changeset
75 <output name="output" file="1_1119_2_22_001.TextGrid"/>
d4c27fdc928b planemo upload commit 7b5663b41b2dc11f9e375b8f386bc31855800bcf-dirty
stevecassidy
parents:
diff changeset
76 </test>
d4c27fdc928b planemo upload commit 7b5663b41b2dc11f9e375b8f386bc31855800bcf-dirty
stevecassidy
parents:
diff changeset
77 </tests>
d4c27fdc928b planemo upload commit 7b5663b41b2dc11f9e375b8f386bc31855800bcf-dirty
stevecassidy
parents:
diff changeset
78
d4c27fdc928b planemo upload commit 7b5663b41b2dc11f9e375b8f386bc31855800bcf-dirty
stevecassidy
parents:
diff changeset
79 <help>Run the MAUS forced aligner on an audio file given a transcription in BPF format.
d4c27fdc928b planemo upload commit 7b5663b41b2dc11f9e375b8f386bc31855800bcf-dirty
stevecassidy
parents:
diff changeset
80 Output is a TextGrid file containing the phonemic annotation with start/end times for each
d4c27fdc928b planemo upload commit 7b5663b41b2dc11f9e375b8f386bc31855800bcf-dirty
stevecassidy
parents:
diff changeset
81 segment.</help>
d4c27fdc928b planemo upload commit 7b5663b41b2dc11f9e375b8f386bc31855800bcf-dirty
stevecassidy
parents:
diff changeset
82
d4c27fdc928b planemo upload commit 7b5663b41b2dc11f9e375b8f386bc31855800bcf-dirty
stevecassidy
parents:
diff changeset
83 <citations>
d4c27fdc928b planemo upload commit 7b5663b41b2dc11f9e375b8f386bc31855800bcf-dirty
stevecassidy
parents:
diff changeset
84 <citation type='bibtex'>
d4c27fdc928b planemo upload commit 7b5663b41b2dc11f9e375b8f386bc31855800bcf-dirty
stevecassidy
parents:
diff changeset
85 @inproceedings{Strunk2011,
d4c27fdc928b planemo upload commit 7b5663b41b2dc11f9e375b8f386bc31855800bcf-dirty
stevecassidy
parents:
diff changeset
86 booktitle = {Proceedings of the Ninth International Conference on Language Resources and Evaluation},
d4c27fdc928b planemo upload commit 7b5663b41b2dc11f9e375b8f386bc31855800bcf-dirty
stevecassidy
parents:
diff changeset
87 publisher = {European Language Resources Association (ELRA)},
d4c27fdc928b planemo upload commit 7b5663b41b2dc11f9e375b8f386bc31855800bcf-dirty
stevecassidy
parents:
diff changeset
88 isbn = {978-2-9517408-8-4},
d4c27fdc928b planemo upload commit 7b5663b41b2dc11f9e375b8f386bc31855800bcf-dirty
stevecassidy
parents:
diff changeset
89 keywords = {forced alignment,language documentation corpora,word times},
d4c27fdc928b planemo upload commit 7b5663b41b2dc11f9e375b8f386bc31855800bcf-dirty
stevecassidy
parents:
diff changeset
90 title = {{Untrained Forced Alignment of Transcriptions and Audio for Language Documentation Corpora using WebMAUS}},
d4c27fdc928b planemo upload commit 7b5663b41b2dc11f9e375b8f386bc31855800bcf-dirty
stevecassidy
parents:
diff changeset
91 url = {http://www.bas.uni-muenchen.de/forschung/publikationen/Schiel-LREC2014.pdf},
d4c27fdc928b planemo upload commit 7b5663b41b2dc11f9e375b8f386bc31855800bcf-dirty
stevecassidy
parents:
diff changeset
92 year = {2014}
d4c27fdc928b planemo upload commit 7b5663b41b2dc11f9e375b8f386bc31855800bcf-dirty
stevecassidy
parents:
diff changeset
93 }
d4c27fdc928b planemo upload commit 7b5663b41b2dc11f9e375b8f386bc31855800bcf-dirty
stevecassidy
parents:
diff changeset
94 </citation>
d4c27fdc928b planemo upload commit 7b5663b41b2dc11f9e375b8f386bc31855800bcf-dirty
stevecassidy
parents:
diff changeset
95 </citations>
d4c27fdc928b planemo upload commit 7b5663b41b2dc11f9e375b8f386bc31855800bcf-dirty
stevecassidy
parents:
diff changeset
96 </tool>