Mercurial > repos > stevecassidy > maus
annotate maus.xml @ 6:28df10f22b51 draft default tip
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| author | stevecassidy |
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| date | Sat, 11 Mar 2017 21:38:41 -0500 |
| parents | 7095d483ca4a |
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| rev | line source |
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1 <tool id="maus_bpf" name="MAUS Align" version="0.01" force_history_refresh="True"> |
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2 <description>from BPF transcription</description> |
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3 |
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4 <requirements> |
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5 <container type="docker">stevecassidy/maus</container> |
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6 </requirements> |
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7 |
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8 <command> |
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9 ln -s "${signal}" input.wav && |
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10 /home/maus/maus OUTFORMAT=TextGrid LANGUAGE=$language |
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11 BPF=$bpf INSKANTEXTGRID=$inskantextgrid INSORTTEXTGRID=$insorttextgrid |
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12 MODUS=$modus MAUSSHIFT=$mausshift MINPAUSLEN=$minpauslen WEIGHT=$weight |
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13 INSPROB=$insprob NOINITIALFINALSILENCE=$noinitialfinalsilence OUTSYMBOL=$outsymbol |
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14 OUT=$output SIGNAL=input.wav |
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15 </command> |
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16 |
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17 <inputs> |
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18 <param name="signal" type="data" format="wav" label="Audio File"/> |
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19 <param name="bpf" type="data" format="par" label="BPF File" help="Orthographic Transcript as BPF"/> |
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20 <param name="language" type="select" label="Language"> |
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21 <option value="aus">Australian English</option> |
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22 <option value="sampa">SAMPA</option> |
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23 <option value="deu">Germa</option> |
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24 <option value="gsw-CH">Swiss German</option> |
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25 <option value="eng">British English</option> |
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26 <option value="fin">Finnish</option> |
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27 <option value="fra">French</option> |
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28 <option value="eng-US">US English</option> |
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29 <option value="nld">Dutch</option> |
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30 <option value="spa">Spanish</option> |
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31 <option value="ita">Italian</option> |
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32 <option value="por">Portugese</option> |
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33 <option value="hun">Hungarian</option> |
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34 <option value="ekk">Estonian</option> |
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35 <option value="pol">Polish</option> |
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36 <option value="nze">NZ English</option> |
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37 <option value="kat">Georgian</option> |
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38 <option value="rus">Russian</option> |
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39 </param> |
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40 <param name="insorttextgrid" type="boolean" value="true" label="Add Orthography to TextGrid output"/> |
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41 <param name="inskantextgrid" type="boolean" value="true" label="Add canonical phonemic transcription to TextGrid output"/> |
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42 <param name="modus" type="select" label="Mode"> |
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43 <option value="standard">Normal MAUS technique</option> |
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44 <option value="align">Do not model pronunciation, align the given phonemic transcript</option> |
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45 <option value="bigram">Use phone recognition constrained by a Bigram model</option> |
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46 </param> |
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47 <param name="mausshift" type="integer" value="10" label="Shift found segment boundaries by this many milliseconds"/> |
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48 <param name="minpauslen" type="integer" label="supress inter-word silence less than n*10ms, ie. enter 5 here to suppress silence less than 50ms" value='5'/> |
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49 <param name="weight" type="float" value="7.0" label="relative weight given to statistical model, higher values will favour the canonical pronunciation"/> |
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50 <param name="insprob" type="float" value="0.0" label="Insertion probability - higher values will reduce the probability of deletions of phonemic segments"/> |
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51 <param name="noinitialfinalsilence" type="select" label="Suppress initial and final silence"> |
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52 <option value="no">No</option> |
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53 <option value="yes">Yes</option> |
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54 </param> |
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55 <param name="outsymbol" type="select" label="Output symbols"> |
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56 <option value="sampa">SAMPA</option> |
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57 <option value="ipa">IPA (utf-8)</option> |
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58 <option value="manner">IPA manner class</option> |
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59 <option value="place">IPA place of articulation</option> |
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60 </param> |
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61 </inputs> |
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62 |
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63 <outputs> |
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64 <data name="output" format="textgrid" label="#echo $signal.element_identifier.replace('.wav', '.TextGrid') #" /> |
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65 </outputs> |
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66 |
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67 |
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68 <tests> |
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69 <test> |
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70 <param name="signal" type="wav" value="1_1119_2_22_001-ch6-speaker16.wav"/> |
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71 <param name="bpf" value="1_1119_2_22_001.par"/> |
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72 <param name="language" value="aus"/> |
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73 <param name="insorttextgrid" value="true" /> |
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74 <param name="inskantextgrid" value="true" /> |
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75 <output name="output" file="1_1119_2_22_001.TextGrid"/> |
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76 </test> |
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77 </tests> |
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78 |
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79 <help>Run the MAUS forced aligner on an audio file given a transcription in BPF format. |
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80 Output is a TextGrid file containing the phonemic annotation with start/end times for each |
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81 segment.</help> |
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82 |
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83 <citations> |
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84 <citation type='bibtex'> |
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85 @inproceedings{Strunk2011, |
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86 booktitle = {Proceedings of the Ninth International Conference on Language Resources and Evaluation}, |
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87 publisher = {European Language Resources Association (ELRA)}, |
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88 isbn = {978-2-9517408-8-4}, |
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89 keywords = {forced alignment,language documentation corpora,word times}, |
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90 title = {{Untrained Forced Alignment of Transcriptions and Audio for Language Documentation Corpora using WebMAUS}}, |
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91 url = {http://www.bas.uni-muenchen.de/forschung/publikationen/Schiel-LREC2014.pdf}, |
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92 year = {2014} |
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93 } |
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94 </citation> |
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95 </citations> |
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96 </tool> |
