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annotate items_to_bpf.xml @ 6:28df10f22b51 draft default tip

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planemo upload commit 72cee9103c0ae4acb5794afaed179bea2c729f2c-dirty
author stevecassidy
date Sat, 11 Mar 2017 21:38:41 -0500
parents d4c27fdc928b
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1 <tool id="items_to_bpf" name="Item List to BPF" version="0.01" force_history_refresh="True">
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2 <description></description>
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3
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4 <command interpreter="python">
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5 items_to_bpf.py --lexicon ${lexicon} --item_list ${item_list} --output_path BPFData
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6 </command>
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7
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8 <inputs>
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9 <param name="item_list" type="data" format="item_list" label="Item List" help=""/>
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10 <param name="lexicon" type="data" format="tabular" label="Lexicon" help=""/>
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11
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12 <param name="job_name" type="text" size="25"
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13 label="Supply a name for the output to remind you what it contains" value="BPF Files"/>
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14 </inputs>
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15
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16 <outputs>
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17 <collection type="list" label="$job_name" name="output1">
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18 <discover_datasets pattern="(?P&lt;designation&gt;[^#]+)#(?P&lt;ext&gt;.+)" directory="BPFData"/>
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19 </collection>
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20 </outputs>
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21
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22 <help>Generate a collection of BPF annotation files from an item list
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23 that contains the item orthography, these are then suitable for input
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24 to the MAUS forced alignment system.</help>
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25 </tool>