Mercurial > repos > stevecassidy > alveoimport
changeset 15:3fd0f8f1f3ce draft
planemo upload for repository https://github.com/Alveo/alveo-galaxy-tools commit 63c347461a5d4fed06799e1d3b699e0d30b48191
| author | stevecassidy |
|---|---|
| date | Thu, 16 Nov 2017 06:52:17 -0500 |
| parents | a38315ecf593 |
| children | fd22df0c6d9b |
| files | alveo_get_primary_text.py alveo_get_primary_text.xml |
| diffstat | 2 files changed, 4 insertions(+), 4 deletions(-) [+] |
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--- a/alveo_get_primary_text.py Wed Nov 01 01:18:15 2017 -0400 +++ b/alveo_get_primary_text.py Thu Nov 16 06:52:17 2017 -0500 @@ -49,7 +49,7 @@ content = item.get_primary_text() if content is not None: with open(fname, 'w') as out: - out.write(content) + out.write(content.decode('utf-8')) return downloaded
--- a/alveo_get_primary_text.xml Wed Nov 01 01:18:15 2017 -0400 +++ b/alveo_get_primary_text.xml Thu Nov 16 06:52:17 2017 -0500 @@ -6,7 +6,7 @@ </requirements> <command interpreter="python"> - alveo_get_primary_text.py --api_key $api_key --item_list_url $item_list_url --output_path ItemListData + alveo_get_primary_text.py --api_key $api_key --item_list $item_list --output_path ItemListData </command> <inputs> @@ -27,7 +27,7 @@ <test> <param name="api_key" value="api-key.dat"/> <param name="import_list" value="item-lists.dat"/> - <param name="item_list_url" value="https://app.alveo.edu.au/item_lists/180"/> + <param name="item_list" value="item_list_180.dat"/> <param name="output_path" value="test_out"/> <output_collection name="output1" type="list" count="6"> <element name="GCSAusE02"> @@ -40,7 +40,7 @@ <test> <param name="api_key" value="api-key.dat"/> <param name="import_list" value="item-lists.dat"/> - <param name="item_list_url" value="https://app.alveo.edu.au/item_lists/52"/> + <param name="item_list" value="item_list_52.dat"/> <param name="output_path" value="test_out"/> <output_collection name="output1" type="list" count="0"> </output_collection>