Mercurial > repos > stevecassidy > alveoimport
comparison alveo_get_primary_text.py @ 15:3fd0f8f1f3ce draft
planemo upload for repository https://github.com/Alveo/alveo-galaxy-tools commit 63c347461a5d4fed06799e1d3b699e0d30b48191
author | stevecassidy |
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date | Thu, 16 Nov 2017 06:52:17 -0500 |
parents | a38315ecf593 |
children |
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14:a38315ecf593 | 15:3fd0f8f1f3ce |
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47 md = item.metadata() | 47 md = item.metadata() |
48 fname = os.path.join(output_path, galaxy_name(md['alveo:metadata']['dcterms:identifier'], 'txt')) | 48 fname = os.path.join(output_path, galaxy_name(md['alveo:metadata']['dcterms:identifier'], 'txt')) |
49 content = item.get_primary_text() | 49 content = item.get_primary_text() |
50 if content is not None: | 50 if content is not None: |
51 with open(fname, 'w') as out: | 51 with open(fname, 'w') as out: |
52 out.write(content) | 52 out.write(content.decode('utf-8')) |
53 | 53 |
54 return downloaded | 54 return downloaded |
55 | 55 |
56 | 56 |
57 def main(): | 57 def main(): |