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"planemo upload for repository https://github.com/stephenshank/tools-iuc/tree/seqcomplexity/tools/seqcomplexity/ commit feda4e2ea70c013fcddd1dbdeab73158fe9c86a4"
author stephenshank
date Mon, 23 May 2022 21:19:04 +0000
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6d8551c2dcc9 "planemo upload for repository https://github.com/stephenshank/tools-iuc/tree/seqcomplexity/tools/seqcomplexity/ commit feda4e2ea70c013fcddd1dbdeab73158fe9c86a4"
stephenshank
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1 <?xml version="1.0"?>
6d8551c2dcc9 "planemo upload for repository https://github.com/stephenshank/tools-iuc/tree/seqcomplexity/tools/seqcomplexity/ commit feda4e2ea70c013fcddd1dbdeab73158fe9c86a4"
stephenshank
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2 <tool id="seqcomplexity" name="Sequence Complexity" version="0.0.1">
6d8551c2dcc9 "planemo upload for repository https://github.com/stephenshank/tools-iuc/tree/seqcomplexity/tools/seqcomplexity/ commit feda4e2ea70c013fcddd1dbdeab73158fe9c86a4"
stephenshank
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3 <description>Calculate sequence complexity (total and per read)</description>
6d8551c2dcc9 "planemo upload for repository https://github.com/stephenshank/tools-iuc/tree/seqcomplexity/tools/seqcomplexity/ commit feda4e2ea70c013fcddd1dbdeab73158fe9c86a4"
stephenshank
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4 <requirements>
6d8551c2dcc9 "planemo upload for repository https://github.com/stephenshank/tools-iuc/tree/seqcomplexity/tools/seqcomplexity/ commit feda4e2ea70c013fcddd1dbdeab73158fe9c86a4"
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5 <requirement type="package" version="0.1.0">seqcomplexity</requirement>
6d8551c2dcc9 "planemo upload for repository https://github.com/stephenshank/tools-iuc/tree/seqcomplexity/tools/seqcomplexity/ commit feda4e2ea70c013fcddd1dbdeab73158fe9c86a4"
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6 </requirements>
6d8551c2dcc9 "planemo upload for repository https://github.com/stephenshank/tools-iuc/tree/seqcomplexity/tools/seqcomplexity/ commit feda4e2ea70c013fcddd1dbdeab73158fe9c86a4"
stephenshank
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7 <command detect_errors="exit_code"><![CDATA[
6d8551c2dcc9 "planemo upload for repository https://github.com/stephenshank/tools-iuc/tree/seqcomplexity/tools/seqcomplexity/ commit feda4e2ea70c013fcddd1dbdeab73158fe9c86a4"
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8 seqcomplexity -q $input_fastq > $output_json
6d8551c2dcc9 "planemo upload for repository https://github.com/stephenshank/tools-iuc/tree/seqcomplexity/tools/seqcomplexity/ commit feda4e2ea70c013fcddd1dbdeab73158fe9c86a4"
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9 ]]>
6d8551c2dcc9 "planemo upload for repository https://github.com/stephenshank/tools-iuc/tree/seqcomplexity/tools/seqcomplexity/ commit feda4e2ea70c013fcddd1dbdeab73158fe9c86a4"
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10 </command>
6d8551c2dcc9 "planemo upload for repository https://github.com/stephenshank/tools-iuc/tree/seqcomplexity/tools/seqcomplexity/ commit feda4e2ea70c013fcddd1dbdeab73158fe9c86a4"
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11 <inputs>
6d8551c2dcc9 "planemo upload for repository https://github.com/stephenshank/tools-iuc/tree/seqcomplexity/tools/seqcomplexity/ commit feda4e2ea70c013fcddd1dbdeab73158fe9c86a4"
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12 <param name="input_fastq" type="data" format="fastq" label="Input reads in FASTQ format" />
6d8551c2dcc9 "planemo upload for repository https://github.com/stephenshank/tools-iuc/tree/seqcomplexity/tools/seqcomplexity/ commit feda4e2ea70c013fcddd1dbdeab73158fe9c86a4"
stephenshank
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13 </inputs>
6d8551c2dcc9 "planemo upload for repository https://github.com/stephenshank/tools-iuc/tree/seqcomplexity/tools/seqcomplexity/ commit feda4e2ea70c013fcddd1dbdeab73158fe9c86a4"
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14 <outputs>
6d8551c2dcc9 "planemo upload for repository https://github.com/stephenshank/tools-iuc/tree/seqcomplexity/tools/seqcomplexity/ commit feda4e2ea70c013fcddd1dbdeab73158fe9c86a4"
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15 <data name="output_json" format="json"/>
6d8551c2dcc9 "planemo upload for repository https://github.com/stephenshank/tools-iuc/tree/seqcomplexity/tools/seqcomplexity/ commit feda4e2ea70c013fcddd1dbdeab73158fe9c86a4"
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16 </outputs>
6d8551c2dcc9 "planemo upload for repository https://github.com/stephenshank/tools-iuc/tree/seqcomplexity/tools/seqcomplexity/ commit feda4e2ea70c013fcddd1dbdeab73158fe9c86a4"
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17 <tests>
6d8551c2dcc9 "planemo upload for repository https://github.com/stephenshank/tools-iuc/tree/seqcomplexity/tools/seqcomplexity/ commit feda4e2ea70c013fcddd1dbdeab73158fe9c86a4"
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18 </tests>
6d8551c2dcc9 "planemo upload for repository https://github.com/stephenshank/tools-iuc/tree/seqcomplexity/tools/seqcomplexity/ commit feda4e2ea70c013fcddd1dbdeab73158fe9c86a4"
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19 <help>
6d8551c2dcc9 "planemo upload for repository https://github.com/stephenshank/tools-iuc/tree/seqcomplexity/tools/seqcomplexity/ commit feda4e2ea70c013fcddd1dbdeab73158fe9c86a4"
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20 </help>
6d8551c2dcc9 "planemo upload for repository https://github.com/stephenshank/tools-iuc/tree/seqcomplexity/tools/seqcomplexity/ commit feda4e2ea70c013fcddd1dbdeab73158fe9c86a4"
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21 <citations>
6d8551c2dcc9 "planemo upload for repository https://github.com/stephenshank/tools-iuc/tree/seqcomplexity/tools/seqcomplexity/ commit feda4e2ea70c013fcddd1dbdeab73158fe9c86a4"
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22 </citations>
6d8551c2dcc9 "planemo upload for repository https://github.com/stephenshank/tools-iuc/tree/seqcomplexity/tools/seqcomplexity/ commit feda4e2ea70c013fcddd1dbdeab73158fe9c86a4"
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23 </tool>