Mercurial > repos > stephenshank > hyphy_fel

annotate macros.xml @ 1:bb04851a0da1 draft

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planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hyphy/ commit 74206c79038a0dbd29a5581bf66e08721a4dfda2-dirty
author stephenshank
date Thu, 17 Jan 2019 14:10:34 -0500
parents 7f0a4907e2e4
children 83ee0d00d28e
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7f0a4907e2e4 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hyphy/ commit 242b3b04d9e05475977bc6def0dd5e5e9fe4380d-dirty
stephenshank
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1 <?xml version="1.0"?>
7f0a4907e2e4 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hyphy/ commit 242b3b04d9e05475977bc6def0dd5e5e9fe4380d-dirty
stephenshank
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2 <macros>
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bb04851a0da1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hyphy/ commit 74206c79038a0dbd29a5581bf66e08721a4dfda2-dirty
stephenshank
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3 <xml name="citations">
bb04851a0da1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hyphy/ commit 74206c79038a0dbd29a5581bf66e08721a4dfda2-dirty
stephenshank
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4 <citations>
bb04851a0da1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hyphy/ commit 74206c79038a0dbd29a5581bf66e08721a4dfda2-dirty
stephenshank
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5 <citation type="doi">10.1093/bioinformatics/bti079</citation>
bb04851a0da1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hyphy/ commit 74206c79038a0dbd29a5581bf66e08721a4dfda2-dirty
stephenshank
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6 <yield/>
bb04851a0da1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hyphy/ commit 74206c79038a0dbd29a5581bf66e08721a4dfda2-dirty
stephenshank
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7 </citations>
bb04851a0da1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hyphy/ commit 74206c79038a0dbd29a5581bf66e08721a4dfda2-dirty
stephenshank
parents: 0
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8 </xml>
bb04851a0da1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hyphy/ commit 74206c79038a0dbd29a5581bf66e08721a4dfda2-dirty
stephenshank
parents: 0
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9 <token name="@VERSION@">2.3.14</token>
bb04851a0da1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hyphy/ commit 74206c79038a0dbd29a5581bf66e08721a4dfda2-dirty
stephenshank
parents: 0
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10 <xml name="requirements">
bb04851a0da1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hyphy/ commit 74206c79038a0dbd29a5581bf66e08721a4dfda2-dirty
stephenshank
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11 <requirements>
bb04851a0da1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hyphy/ commit 74206c79038a0dbd29a5581bf66e08721a4dfda2-dirty
stephenshank
parents: 0
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12 <requirement type="package" version="@VERSION@">
bb04851a0da1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hyphy/ commit 74206c79038a0dbd29a5581bf66e08721a4dfda2-dirty
stephenshank
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13 hyphy</requirement>
bb04851a0da1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hyphy/ commit 74206c79038a0dbd29a5581bf66e08721a4dfda2-dirty
stephenshank
parents: 0
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14 <yield/>
bb04851a0da1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hyphy/ commit 74206c79038a0dbd29a5581bf66e08721a4dfda2-dirty
stephenshank
parents: 0
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15 </requirements>
bb04851a0da1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hyphy/ commit 74206c79038a0dbd29a5581bf66e08721a4dfda2-dirty
stephenshank
parents: 0
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16 </xml>
bb04851a0da1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hyphy/ commit 74206c79038a0dbd29a5581bf66e08721a4dfda2-dirty
stephenshank
parents: 0
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17 <token name="@HYPHY_INVOCATION@"><![CDATA[export HYPHY=`which HYPHYMP` &&
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7f0a4907e2e4 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hyphy/ commit 242b3b04d9e05475977bc6def0dd5e5e9fe4380d-dirty
stephenshank
parents:
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18 export HYPHY_PATH=`dirname \$HYPHY` &&
7f0a4907e2e4 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hyphy/ commit 242b3b04d9e05475977bc6def0dd5e5e9fe4380d-dirty
stephenshank
parents:
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19 export HYPHY_LIB=`readlink -f \$HYPHY_PATH/../lib/hyphy` &&
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bb04851a0da1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hyphy/ commit 74206c79038a0dbd29a5581bf66e08721a4dfda2-dirty
stephenshank
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20 cat tool_params | HYPHYMP LIBPATH=\$HYPHY_LIB ]]></token>
bb04851a0da1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hyphy/ commit 74206c79038a0dbd29a5581bf66e08721a4dfda2-dirty
stephenshank
parents: 0
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21 </macros>