Mercurial > repos > stephenshank > hyphy_busted

annotate macros.xml @ 1:a1fa972cfe9f draft

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planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hyphy/ commit 74206c79038a0dbd29a5581bf66e08721a4dfda2-dirty
author stephenshank
date Thu, 17 Jan 2019 14:07:54 -0500
parents 2d7cb41a961b
children c523fa547d0b
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2d7cb41a961b planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hyphy/ commit 242b3b04d9e05475977bc6def0dd5e5e9fe4380d-dirty
stephenshank
parents:
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1 <?xml version="1.0"?>
2d7cb41a961b planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hyphy/ commit 242b3b04d9e05475977bc6def0dd5e5e9fe4380d-dirty
stephenshank
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2 <macros>
1
a1fa972cfe9f planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hyphy/ commit 74206c79038a0dbd29a5581bf66e08721a4dfda2-dirty
stephenshank
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3 <xml name="citations">
a1fa972cfe9f planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hyphy/ commit 74206c79038a0dbd29a5581bf66e08721a4dfda2-dirty
stephenshank
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4 <citations>
a1fa972cfe9f planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hyphy/ commit 74206c79038a0dbd29a5581bf66e08721a4dfda2-dirty
stephenshank
parents: 0
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5 <citation type="doi">10.1093/bioinformatics/bti079</citation>
a1fa972cfe9f planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hyphy/ commit 74206c79038a0dbd29a5581bf66e08721a4dfda2-dirty
stephenshank
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6 <yield/>
a1fa972cfe9f planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hyphy/ commit 74206c79038a0dbd29a5581bf66e08721a4dfda2-dirty
stephenshank
parents: 0
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7 </citations>
a1fa972cfe9f planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hyphy/ commit 74206c79038a0dbd29a5581bf66e08721a4dfda2-dirty
stephenshank
parents: 0
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8 </xml>
a1fa972cfe9f planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hyphy/ commit 74206c79038a0dbd29a5581bf66e08721a4dfda2-dirty
stephenshank
parents: 0
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9 <token name="@VERSION@">2.3.14</token>
a1fa972cfe9f planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hyphy/ commit 74206c79038a0dbd29a5581bf66e08721a4dfda2-dirty
stephenshank
parents: 0
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10 <xml name="requirements">
a1fa972cfe9f planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hyphy/ commit 74206c79038a0dbd29a5581bf66e08721a4dfda2-dirty
stephenshank
parents: 0
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11 <requirements>
a1fa972cfe9f planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hyphy/ commit 74206c79038a0dbd29a5581bf66e08721a4dfda2-dirty
stephenshank
parents: 0
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12 <requirement type="package" version="@VERSION@">
a1fa972cfe9f planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hyphy/ commit 74206c79038a0dbd29a5581bf66e08721a4dfda2-dirty
stephenshank
parents: 0
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13 hyphy</requirement>
a1fa972cfe9f planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hyphy/ commit 74206c79038a0dbd29a5581bf66e08721a4dfda2-dirty
stephenshank
parents: 0
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14 <yield/>
a1fa972cfe9f planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hyphy/ commit 74206c79038a0dbd29a5581bf66e08721a4dfda2-dirty
stephenshank
parents: 0
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15 </requirements>
a1fa972cfe9f planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hyphy/ commit 74206c79038a0dbd29a5581bf66e08721a4dfda2-dirty
stephenshank
parents: 0
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16 </xml>
a1fa972cfe9f planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hyphy/ commit 74206c79038a0dbd29a5581bf66e08721a4dfda2-dirty
stephenshank
parents: 0
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17 <token name="@HYPHY_INVOCATION@"><![CDATA[export HYPHY=`which HYPHYMP` &&
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2d7cb41a961b planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hyphy/ commit 242b3b04d9e05475977bc6def0dd5e5e9fe4380d-dirty
stephenshank
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18 export HYPHY_PATH=`dirname \$HYPHY` &&
2d7cb41a961b planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hyphy/ commit 242b3b04d9e05475977bc6def0dd5e5e9fe4380d-dirty
stephenshank
parents:
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19 export HYPHY_LIB=`readlink -f \$HYPHY_PATH/../lib/hyphy` &&
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a1fa972cfe9f planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hyphy/ commit 74206c79038a0dbd29a5581bf66e08721a4dfda2-dirty
stephenshank
parents: 0
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20 cat tool_params | HYPHYMP LIBPATH=\$HYPHY_LIB ]]></token>
a1fa972cfe9f planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hyphy/ commit 74206c79038a0dbd29a5581bf66e08721a4dfda2-dirty
stephenshank
parents: 0
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21 </macros>