Mercurial > repos > stephenshank > hyphy_absrel

view macros.xml @ 4:3f81b18e2961 draft

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planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hyphy/ commit 6da8a2296bb256e47852690cf2221a7c943d8adc-dirty
author stephenshank
date Tue, 30 Oct 2018 10:54:35 -0400
parents daec257d4976
children 05481658ac36
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<?xml version="1.0"?>
<macros>
    <xml name="citations">
        <citations>
            <citation type="doi">10.1093/bioinformatics/bti079</citation>
            <yield />
        </citations>
    </xml>
    <token name="@VERSION@">2.3.14</token>
    <xml name="requirements">
        <requirements>
            <requirement type="package" version="@VERSION@">hyphy</requirement>
            <yield />
        </requirements>
    </xml>
    <token name="@HYPHY_INVOCATION@"><![CDATA[export HYPHY=`which HYPHYMP` &&
export HYPHY_PATH=`dirname \$HYPHY` &&
export HYPHY_LIB=`readlink -f \$HYPHY_PATH/../lib/hyphy` &&
cat tool_params | HYPHYMP LIBPATH=\$HYPHY_LIB ]]>
    </token>
    <token name="@HYPHYMPI_INVOCATION@"><![CDATA[export HYPHY=`which HYPHYMP` &&
export HYPHY_PATH=`dirname \$HYPHY` &&
export HYPHY_LIB=`readlink -f \$HYPHY_PATH/../lib/hyphy` &&
cat tool_params | mpirun -np \${GALAXY_SLOTS:-1} HYPHYMPI LIBPATH=\$HYPHY_LIB ]]>
    </token>
</macros>