Mercurial > repos > stephenshank > hyphy_absrel

diff macros.xml @ 4:3f81b18e2961 draft

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planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hyphy/ commit 6da8a2296bb256e47852690cf2221a7c943d8adc-dirty
author stephenshank
date Tue, 30 Oct 2018 10:54:35 -0400
parents daec257d4976
children 05481658ac36
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line diff
--- a/macros.xml	Wed Sep 12 17:03:29 2018 -0400
+++ b/macros.xml	Tue Oct 30 10:54:35 2018 -0400
@@ -6,7 +6,7 @@
             <yield />
         </citations>
     </xml>
-    <token name="@VERSION@">2.3.12</token>
+    <token name="@VERSION@">2.3.14</token>
     <xml name="requirements">
         <requirements>
             <requirement type="package" version="@VERSION@">hyphy</requirement>
@@ -18,4 +18,9 @@
 export HYPHY_LIB=`readlink -f \$HYPHY_PATH/../lib/hyphy` &&
 cat tool_params | HYPHYMP LIBPATH=\$HYPHY_LIB ]]>
     </token>
+    <token name="@HYPHYMPI_INVOCATION@"><![CDATA[export HYPHY=`which HYPHYMP` &&
+export HYPHY_PATH=`dirname \$HYPHY` &&
+export HYPHY_LIB=`readlink -f \$HYPHY_PATH/../lib/hyphy` &&
+cat tool_params | mpirun -np \${GALAXY_SLOTS:-1} HYPHYMPI LIBPATH=\$HYPHY_LIB ]]>
+    </token>
 </macros>
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