diff macs2_wrapper.py @ 20:db2805f9df66 draft

Replace simplejson with json.

--- a/macs2_wrapper.py	Wed Apr 09 18:03:05 2014 -0400
+++ b/macs2_wrapper.py	Wed Apr 09 18:06:03 2014 -0400
@@ -1,12 +1,9 @@
-#purpose: macs2 python wrapper
-#author: Ziru Zhou
-#date: November, 2012
+# macs2 python wrapper
+# based on http://toolshed.g2.bx.psu.edu/view/modencode-dcc/macs2
 
 import sys, subprocess, tempfile, shutil, glob, os, os.path, gzip
 from galaxy import eggs
-import pkg_resources
-pkg_resources.require( "simplejson" )
-import simplejson
+import json
 
 CHUNK_SIZE = 1024
 
@@ -57,8 +54,8 @@
 #==========================================================================================
 def main():
     #take in options file and output file names
-    options = simplejson.load( open( sys.argv[1] ) )
-    outputs = simplejson.load( open( sys.argv[2] ) )
+    options = json.load( open( sys.argv[1] ) )
+    outputs = json.load( open( sys.argv[2] ) )
 
     #=================================================================================
     #parse options and execute macs2