Mercurial > repos > stef > qdnaseq

changeset 47:e46d7ee7e0b5 draft

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Uploaded
author stef
date Sun, 03 Aug 2014 11:26:29 -0400
parents fee97223c9aa
children 8655dc6909d2
files QDNAseq.xml
diffstat 1 files changed, 3 insertions(+), 13 deletions(-) [+]
line wrap: on
line diff
--- a/QDNAseq.xml	Sun Aug 03 11:26:19 2014 -0400
+++ b/QDNAseq.xml	Sun Aug 03 11:26:29 2014 -0400
@@ -2,25 +2,15 @@
   
   <requirements>
     <!-- <requirement type="set_environment">QDNASEQ_SCRIPT_PATH</requirement> -->
-    <!-- The R package for v3.1.0 is not ready yet -->
-    <!-- <requirement type="package" version="3.1.0">R</requirement>-->
+    <requirement type="package" version="3.1.0">R</requirement>
     <requirement type="package" version="0.1.18">samtools</requirement>
-    <!-- <requirement type="package" version="1.0.5">bioc_qdnaseq</requirement> -->
   </requirements>
 
   <description>Quantitative copy number abberation detection</description>
-  
-  <!-- command block to call script with specific R installation (set full paths) -->
-  <!--
-  <command>
-    /full/path/to/Rscript 
-    /full/path/to/QDNAseq.R 
-    $qdnaseq_cfg
-  </command>
-  -->
 
   <!-- command block to call script with default R environment -->
-  <command interpreter="Rscript">
+  <!-- change interpreter to /full/path/to/Rscript if required -->
+  <command interpreter="Rscript"> 
     QDNAseq.R 
     $qdnaseq_cfg
   </command>