Mercurial > repos > stef > qdnaseq
changeset 69:b4477584bb03 draft
Uploaded
| author | stef |
|---|---|
| date | Tue, 26 Aug 2014 08:40:24 -0400 |
| parents | 68a090cffb6f |
| children | c22cb12128cf |
| files | QDNAseq.R QDNAseq.xml |
| diffstat | 2 files changed, 4 insertions(+), 4 deletions(-) [+] |
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--- a/QDNAseq.R Tue Aug 26 07:49:13 2014 -0400 +++ b/QDNAseq.R Tue Aug 26 08:40:24 2014 -0400 @@ -299,7 +299,7 @@ png( img_file_path, width=PLOT_WIDTH, height=PLOT_HEIGHT, res=PLOT_RES ); par( PAR_SET ) plot( copyNumbersSmooth[ ,sample ], main=paste(sample, ": CopyNumbers", sep="") ) - mtext( paste( binSizeString, " bins" sep=""), 3 ) + mtext( paste( binSizeString, " bins", sep=""), 3 ) abline( h=c(-2,-1,1,2,3,4), lty=1, lwd=0.5, col="grey" ) dev.off() @@ -313,8 +313,8 @@ ## COPYNUMBER PLOT png( img_file_path, width=PLOT_WIDTH, height=PLOT_HEIGHT, res=PLOT_RES ); par( PAR_SET ) - plot( copyNumbersSegmented[ ,sample ], main=paste(sample, ": CopyNumbers and Segments", sep="") ); - mtext( paste( "(", binSizeString, " bins)" sep=""), 3 ) + plot( copyNumbersSegmented[ ,sample ], main=paste(sample, ": CopyNumbers and Segments", sep="") ) + mtext( paste( "(", binSizeString, " bins)", sep=""), 3 ) abline( h=c(-2,-1,1,2,3,4), lty=1, lwd=0.5, col="grey" ) dev.off()
--- a/QDNAseq.xml Tue Aug 26 07:49:13 2014 -0400 +++ b/QDNAseq.xml Tue Aug 26 08:40:24 2014 -0400 @@ -283,7 +283,7 @@ .. _package: http://www.bioconductor.org/packages/release/bioc/html/QDNAseq.html -.. image:: LGG150_copynumber_example.png :height: 240 :width: 480 +.. image:: LGG150_copynumber_example.png </help>