# HG changeset patch
# User stef
# Date 1409056824 14400
# Node ID b4477584bb034b4c276ebe0bbc6c021b46e56cda
# Parent  68a090cffb6f58cb1fc77a8ed82aaaaed0fd6179
Uploaded

diff -r 68a090cffb6f -r b4477584bb03 QDNAseq.R
--- a/QDNAseq.R	Tue Aug 26 07:49:13 2014 -0400
+++ b/QDNAseq.R	Tue Aug 26 08:40:24 2014 -0400
@@ -299,7 +299,7 @@
 		png( img_file_path, width=PLOT_WIDTH, height=PLOT_HEIGHT, res=PLOT_RES ); 
 			par( PAR_SET )
 			plot( copyNumbersSmooth[ ,sample ], main=paste(sample, ": CopyNumbers", sep="") ) 
-			mtext( paste( binSizeString, " bins" sep=""), 3 )
+			mtext( paste( binSizeString, " bins", sep=""), 3 )
 			abline( h=c(-2,-1,1,2,3,4), lty=1, lwd=0.5, col="grey" )
 		dev.off()
 		
@@ -313,8 +313,8 @@
 			## COPYNUMBER PLOT
 			png( img_file_path, width=PLOT_WIDTH, height=PLOT_HEIGHT, res=PLOT_RES ); 
 				par( PAR_SET )
-				plot( copyNumbersSegmented[ ,sample ], main=paste(sample, ": CopyNumbers and Segments", sep="") ); 
-				mtext( paste( "(", binSizeString, " bins)" sep=""), 3 )
+				plot( copyNumbersSegmented[ ,sample ], main=paste(sample, ": CopyNumbers and Segments", sep="") )
+				mtext( paste( "(", binSizeString, " bins)", sep=""), 3 )
 				abline( h=c(-2,-1,1,2,3,4), lty=1, lwd=0.5, col="grey" )
 			dev.off()
 
diff -r 68a090cffb6f -r b4477584bb03 QDNAseq.xml
--- a/QDNAseq.xml	Tue Aug 26 07:49:13 2014 -0400
+++ b/QDNAseq.xml	Tue Aug 26 08:40:24 2014 -0400
@@ -283,7 +283,7 @@
 
 .. _package: http://www.bioconductor.org/packages/release/bioc/html/QDNAseq.html
 
-.. image:: LGG150_copynumber_example.png :height: 240 :width: 480
+.. image:: LGG150_copynumber_example.png
 
   </help>