Mercurial > repos > stef > qdnaseq

changeset 50:5b5f7262f7ad draft

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Uploaded
author stef
date Mon, 04 Aug 2014 06:02:17 -0400
parents 9debd89af654
children 1ca13feb557a
files tool_dependencies.xml
diffstat 1 files changed, 8 insertions(+), 7 deletions(-) [+]
line wrap: on
line diff
--- a/tool_dependencies.xml	Mon Aug 04 04:26:38 2014 -0400
+++ b/tool_dependencies.xml	Mon Aug 04 06:02:17 2014 -0400
@@ -1,18 +1,19 @@
 <?xml version="1.0"?>
 <tool_dependency>
     
-    <package name="R" version="3.1.0">
-        <repository changeset_revision="a6cc7706ea14" name="package_r_3_1_0" owner="iuc" toolshed="https://testtoolshed.g2.bx.psu.edu" />
+    <package name="samtools" version="0.1.18">
+        <repository changeset_revision="c0f72bdba484" name="package_samtools_0_1_18" owner="devteam" toolshed="https://testtoolshed.g2.bx.psu.edu" prior_installation_required="TRUE" />
     </package>
-    <!-- There is no R 3.1.0 package yet which is required due to bioconductor 2.14 package -->
-    <!-- As soon as it is available the dependencies will be set via "package_qdnaseq_1_0_5" -->
+
+    <package name="R" version="3.1.0">
+        <repository changeset_revision="a6cc7706ea14" name="package_r_3_1_0" owner="iuc" toolshed="https://testtoolshed.g2.bx.psu.edu" prior_installation_required="TRUE" />
+    </package>
+    
+    <!-- As soon as R 3_1_0 works, all QDNAseq dependencies will be set via "package_qdnaseq_1_0_5" -->
     <!--
     <package name="qdnaseq" version="1.0.5">
         <repository name="package_qdnaseq_1_0_5" owner="stef"/>
     </package>
     -->
-    <package name="samtools" version="0.1.18">
-        <repository changeset_revision="c0f72bdba484" name="package_samtools_0_1_18" owner="devteam" toolshed="https://testtoolshed.g2.bx.psu.edu" />
-    </package>
     
 </tool_dependency>