# HG changeset patch
# User stef
# Date 1407146537 14400
# Node ID 5b5f7262f7ad54edabc9f52c1b3d5b47f44e164a
# Parent  9debd89af654b96cf593960f862608c25b97c64b
Uploaded

diff -r 9debd89af654 -r 5b5f7262f7ad tool_dependencies.xml
--- a/tool_dependencies.xml	Mon Aug 04 04:26:38 2014 -0400
+++ b/tool_dependencies.xml	Mon Aug 04 06:02:17 2014 -0400
@@ -1,18 +1,19 @@
 <?xml version="1.0"?>
 <tool_dependency>
     
-    <package name="R" version="3.1.0">
-        <repository changeset_revision="a6cc7706ea14" name="package_r_3_1_0" owner="iuc" toolshed="https://testtoolshed.g2.bx.psu.edu" />
+    <package name="samtools" version="0.1.18">
+        <repository changeset_revision="c0f72bdba484" name="package_samtools_0_1_18" owner="devteam" toolshed="https://testtoolshed.g2.bx.psu.edu" prior_installation_required="TRUE" />
     </package>
-    <!-- There is no R 3.1.0 package yet which is required due to bioconductor 2.14 package -->
-    <!-- As soon as it is available the dependencies will be set via "package_qdnaseq_1_0_5" -->
+
+    <package name="R" version="3.1.0">
+        <repository changeset_revision="a6cc7706ea14" name="package_r_3_1_0" owner="iuc" toolshed="https://testtoolshed.g2.bx.psu.edu" prior_installation_required="TRUE" />
+    </package>
+    
+    <!-- As soon as R 3_1_0 works, all QDNAseq dependencies will be set via "package_qdnaseq_1_0_5" -->
     <!--
     <package name="qdnaseq" version="1.0.5">
         <repository name="package_qdnaseq_1_0_5" owner="stef"/>
     </package>
     -->
-    <package name="samtools" version="0.1.18">
-        <repository changeset_revision="c0f72bdba484" name="package_samtools_0_1_18" owner="devteam" toolshed="https://testtoolshed.g2.bx.psu.edu" />
-    </package>
     
 </tool_dependency>