Mercurial > repos > stef > qdnaseq
changeset 15:4472cc10b065 draft
Uploaded
| author | stef |
|---|---|
| date | Mon, 16 Jun 2014 11:23:41 -0400 |
| parents | 7be26321018b |
| children | 16a21a760ba2 |
| files | tool_dependencies.xml |
| diffstat | 1 files changed, 2 insertions(+), 4 deletions(-) [+] |
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--- a/tool_dependencies.xml Mon Jun 16 11:21:23 2014 -0400 +++ b/tool_dependencies.xml Mon Jun 16 11:23:41 2014 -0400 @@ -14,9 +14,7 @@ <actions> <action type="shell_command">echo "[DEBUG] WORKING DIR:" && pwd</action> <action type="shell_command">echo "[DEBUG] DIR LISTING:" && ls -l</action> - <!--<action type="download_by_url"> - http://bioconductor.org/packages/release/bioc/src/contrib/QDNAseq_1.0.5.tar.gz - </action>--> + <action type="set_environment_for_install"> <repository changeset_revision="232ebc8b1c0d" name="package_r_3_0_3" owner="iuc" prior_installation_required="True" toolshed="https://testtoolshed.g2.bx.psu.edu/"> <package name="R" version="3.0.3" /> @@ -25,7 +23,7 @@ <action type="set_environment"> <environment_variable action="prepend_to" name="R_LIBS">$INSTALL_DIR/bin</environment_variable> </action> - <action type="shell_command">echo "[DEBUG] NOW ABOUT TO DOWNLOAD</action> + <action type="shell_command">echo "[DEBUG] NOW ABOUT TO DOWNLOAD"</action> <action type="shell_command">wget http://bioconductor.org/packages/release/bioc/src/contrib/QDNAseq_1.0.5.tar.gz</action> <action type="shell_command">echo "[DEBUG] WORKING DIR:" && pwd</action>