# HG changeset patch
# User stef
# Date 1402932221 14400
# Node ID 4472cc10b065ba3e6b8a2cccdb7bafbf8afcc695
# Parent  7be26321018bcd803a79254c02ba06628d3b092f
Uploaded

diff -r 7be26321018b -r 4472cc10b065 tool_dependencies.xml
--- a/tool_dependencies.xml	Mon Jun 16 11:21:23 2014 -0400
+++ b/tool_dependencies.xml	Mon Jun 16 11:23:41 2014 -0400
@@ -14,9 +14,7 @@
 			<actions>
 				<action type="shell_command">echo "[DEBUG] WORKING DIR:" &amp;&amp; pwd</action>
 				<action type="shell_command">echo "[DEBUG] DIR LISTING:" &amp;&amp; ls -l</action>
-				<!--<action type="download_by_url">
-					http://bioconductor.org/packages/release/bioc/src/contrib/QDNAseq_1.0.5.tar.gz
-				</action>-->
+
 				<action type="set_environment_for_install">
 					<repository changeset_revision="232ebc8b1c0d" name="package_r_3_0_3" owner="iuc" prior_installation_required="True" toolshed="https://testtoolshed.g2.bx.psu.edu/">
 						<package name="R" version="3.0.3" />
@@ -25,7 +23,7 @@
 				<action type="set_environment">
 						<environment_variable action="prepend_to" name="R_LIBS">$INSTALL_DIR/bin</environment_variable>
 				</action>
-				<action type="shell_command">echo "[DEBUG] NOW ABOUT TO DOWNLOAD</action>
+				<action type="shell_command">echo "[DEBUG] NOW ABOUT TO DOWNLOAD"</action>
 				<action type="shell_command">wget http://bioconductor.org/packages/release/bioc/src/contrib/QDNAseq_1.0.5.tar.gz</action>
 				
 				<action type="shell_command">echo "[DEBUG] WORKING DIR:" &amp;&amp; pwd</action>