Mercurial > repos > stef > qdnaseq

changeset 13:0a242c6cfdde draft

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Uploaded
author stef
date Mon, 16 Jun 2014 08:23:31 -0400
parents 7318921f937c
children 7be26321018b
files tool_dependencies.xml
diffstat 1 files changed, 3 insertions(+), 4 deletions(-) [+]
line wrap: on
line diff
--- a/tool_dependencies.xml	Mon Jun 16 08:19:03 2014 -0400
+++ b/tool_dependencies.xml	Mon Jun 16 08:23:31 2014 -0400
@@ -20,14 +20,13 @@
 						<package name="R" version="3.0.3" />
 					</repository>
 				</action>
+				<action type="set_environment">
+						<environment_variable action="prepend_to" name="R_LIBS">$INSTALL_DIR/bin</environment_variable>
+				</action>
 				<action type="shell_command">wget http://bioconductor.org/packages/release/bioc/src/contrib/QDNAseq_1.0.5.tar.gz</action>
 				<action type="shell_command">ls -l &amp;&amp; echo "print dir" &amp;&amp; pwd</action>
 				<action type="shell_command">export R_LIBS=$INSTALL_DIR &amp;&amp; R CMD INSTALL --build QDNAseq_1.0.5.tar.gz</action>
 				<!--<action type="shell_command">R CMD INSTALL QDNAseq_1.0.5.tar.gz</action>-->
-				
-				<action type="set_environment">
-						<environment_variable action="prepend_to" name="R_LIBS">$INSTALL_DIR/bin</environment_variable>
-				</action>
 			</actions>
 		</install>