# HG changeset patch
# User stef
# Date 1402921411 14400
# Node ID 0a242c6cfdde57eb9dcbf9403bc28ba0a4cfbecf
# Parent  7318921f937cacabea60e4385dcc91bccc66262a
Uploaded

diff -r 7318921f937c -r 0a242c6cfdde tool_dependencies.xml
--- a/tool_dependencies.xml	Mon Jun 16 08:19:03 2014 -0400
+++ b/tool_dependencies.xml	Mon Jun 16 08:23:31 2014 -0400
@@ -20,14 +20,13 @@
 						<package name="R" version="3.0.3" />
 					</repository>
 				</action>
+				<action type="set_environment">
+						<environment_variable action="prepend_to" name="R_LIBS">$INSTALL_DIR/bin</environment_variable>
+				</action>
 				<action type="shell_command">wget http://bioconductor.org/packages/release/bioc/src/contrib/QDNAseq_1.0.5.tar.gz</action>
 				<action type="shell_command">ls -l &amp;&amp; echo "print dir" &amp;&amp; pwd</action>
 				<action type="shell_command">export R_LIBS=$INSTALL_DIR &amp;&amp; R CMD INSTALL --build QDNAseq_1.0.5.tar.gz</action>
 				<!--<action type="shell_command">R CMD INSTALL QDNAseq_1.0.5.tar.gz</action>-->
-				
-				<action type="set_environment">
-						<environment_variable action="prepend_to" name="R_LIBS">$INSTALL_DIR/bin</environment_variable>
-				</action>
 			</actions>
 		</install>