Mercurial > repos > stef > qdnaseq

comparison tool_dependencies.xml @ 78:81ba2f857fe2 draft

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author stef
date Wed, 04 Mar 2015 08:42:14 -0500
parents 0feb7fa37245
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77:acf62630e4b5 78:81ba2f857fe2
3 3
4 <package name="samtools" version="0.1.18"> 4 <package name="samtools" version="0.1.18">
5 <repository changeset_revision="c0f72bdba484" name="package_samtools_0_1_18" owner="devteam" prior_installation_required="TRUE" toolshed="https://testtoolshed.g2.bx.psu.edu" /> 5 <repository changeset_revision="c0f72bdba484" name="package_samtools_0_1_18" owner="devteam" prior_installation_required="TRUE" toolshed="https://testtoolshed.g2.bx.psu.edu" />
6 </package> 6 </package>
7 7
8 <!-- As soon as R 3_1_0 package works with all packages, all dependencies will be set via "package_qdnaseq_1_0_5" --> 8 <!-- As soon as R 3_1_0 package works with all packages, all dependencies will be set via "package_qdnaseq_1_2_2" -->
9 <!-- Currently these have to be manually installed by installing Bioconductor package "QDNAseq" --> 9 <!-- Currently these have to be manually installed by installing Bioconductor package "QDNAseq" -->
10 10
11 <!-- 11 <!--
12 <package name="R" version="3.1.0"> 12 <package name="R" version="3.1.0">
13 <repository changeset_revision="a6cc7706ea14" name="package_r_3_1_0" owner="iuc" prior_installation_required="TRUE" /> 13 <repository changeset_revision="a6cc7706ea14" name="package_r_3_1_0" owner="iuc" prior_installation_required="TRUE" />
14 </package> 14 </package>
15 --> 15 -->
16 16
17 <!-- 17 <!--
18 <package name="qdnaseq" version="1.0.5"> 18 <package name="qdnaseq" version="1.2.2">
19 <repository name="package_qdnaseq_1_0_5" owner="stef" prior_installation_required="TRUE"/> 19 <repository name="package_qdnaseq_1_2_2" owner="stef" prior_installation_required="TRUE"/>
20 </package> 20 </package>
21 --> 21 -->
22 22
23 <set_environment version="1.0"> 23 <set_environment version="1.0">
24 <environment_variable action="set_to" name="QDNASEQ_PATH">$REPOSITORY_INSTALL_DIR</environment_variable> 24 <environment_variable action="set_to" name="QDNASEQ_PATH">$REPOSITORY_INSTALL_DIR</environment_variable>