Mercurial > repos > stef > package_qdnaseq_1_0_5
changeset 10:6a847622a148 draft
Uploaded
| author | stef |
|---|---|
| date | Mon, 27 Oct 2014 06:13:54 -0400 |
| parents | e2f6869f2638 |
| children | 4a3ff383a680 |
| files | tool_dependencies.xml |
| diffstat | 1 files changed, 28 insertions(+), 2 deletions(-) [+] |
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--- a/tool_dependencies.xml Tue Oct 07 08:02:35 2014 -0400 +++ b/tool_dependencies.xml Mon Oct 27 06:13:54 2014 -0400 @@ -18,7 +18,7 @@ <package>http://www.bioconductor.org/packages/release/bioc/src/contrib/limma_3.20.9.tar.gz</package> <package>http://bioconductor.org/packages/release/bioc/src/contrib/Rsamtools_1.16.1.tar.gz</package> --> - + <!-- <package>http://cran.fhcrc.org/src/contrib/R.methodsS3_1.6.1.tar.gz</package> <package>http://cran.fhcrc.org/src/contrib/matrixStats_0.10.0.tar.gz</package> <package>http://cran.fhcrc.org/src/contrib/R.oo_1.18.0.tar.gz</package> @@ -30,6 +30,8 @@ <package>http://bioconductor.org/packages/2.14/bioc/src/contrib/CGHbase_1.24.0.tar.gz</package> <package>http://bioconductor.org/packages/2.14/bioc/src/contrib/impute_1.38.1.tar.gz</package> <package>http://bioconductor.org/packages/2.14/bioc/src/contrib/DNAcopy_1.38.1.tar.gz</package> + --> + <!-- <package>http://cran.fhcrc.org/src/contrib/snow_0.3-13.tar.gz</package> <package>http://cran.fhcrc.org/src/contrib/snowfall_1.84-6.tar.gz</package> @@ -47,6 +49,7 @@ <!-- + <package>http://path/to/R.methodsS3_1.6.1.tar.gz</package> <package>http://path/to/matrixStats_0.10.0.tar.gz</package> <package>http://path/to/R.oo_1.18.0.tar.gz</package> @@ -71,7 +74,30 @@ <package>http://path/to/Rsamtools_1.16.1.tar.gz</package> <package>http://path/to/QDNAseq_1.0.5.tar.gz</package> --> - + <package>https://bitbucket.org/stef_van_lieshout/tmp/downloads/R.methodsS3_1.6.1.tar.gz</package> + <package>https://bitbucket.org/stef_van_lieshout/tmp/downloads/matrixStats_0.10.0.tar.gz</package> + <package>https://bitbucket.org/stef_van_lieshout/tmp/downloads/R.oo_1.18.0.tar.gz</package> + <package>https://bitbucket.org/stef_van_lieshout/tmp/downloads/R.utils_1.32.4.tar.gz</package> + <package>https://bitbucket.org/stef_van_lieshout/tmp/downloads/BiocGenerics_0.10.0.tar.gz</package> + <package>https://bitbucket.org/stef_van_lieshout/tmp/downloads/Biobase_2.24.0.tar.gz</package> + <package>https://bitbucket.org/stef_van_lieshout/tmp/downloads/limma_3.20.5.tar.gz</package> + <package>https://bitbucket.org/stef_van_lieshout/tmp/downloads/marray_1.42.0.tar.gz</package> + <package>https://bitbucket.org/stef_van_lieshout/tmp/downloads/CGHbase_1.24.0.tar.gz</package> + <package>https://bitbucket.org/stef_van_lieshout/tmp/downloads/impute_1.38.1.tar.gz</package> + <package>https://bitbucket.org/stef_van_lieshout/tmp/downloads/DNAcopy_1.38.1.tar.gz</package> + <package>https://bitbucket.org/stef_van_lieshout/tmp/downloads/snow_0.3-13.tar.gz</package> + <package>https://bitbucket.org/stef_van_lieshout/tmp/downloads/snowfall_1.84-6.tar.gz</package> + <package>https://bitbucket.org/stef_van_lieshout/tmp/downloads/CGHcall_2.26.0.tar.gz</package> + <package>https://bitbucket.org/stef_van_lieshout/tmp/downloads/IRanges_1.22.9.tar.gz</package> + <package>https://bitbucket.org/stef_van_lieshout/tmp/downloads/GenomeInfoDb_1.0.2.tar.gz</package> + <package>https://bitbucket.org/stef_van_lieshout/tmp/downloads/XVector_0.4.0.tar.gz</package> + <package>https://bitbucket.org/stef_van_lieshout/tmp/downloads/GenomicRanges_1.16.4.tar.gz</package> + <package>https://bitbucket.org/stef_van_lieshout/tmp/downloads/zlibbioc_1.10.0.tar.gz</package> + <package>https://bitbucket.org/stef_van_lieshout/tmp/downloads/Biostrings_2.32.1.tar.gz</package> + <package>https://bitbucket.org/stef_van_lieshout/tmp/downloads/bitops_1.0-6.tar.gz</package> + <package>https://bitbucket.org/stef_van_lieshout/tmp/downloads/Rsamtools_1.16.1.tar.gz</package> + <package>https://bitbucket.org/stef_van_lieshout/tmp/downloads/QDNAseq_1.0.5.tar.gz</package> + </action> <action type="shell_command">echo "[DEBUG] ...after"</action> </actions>