Mercurial > repos > stef > falco
changeset 10:cdd80484429d draft
Uploaded
author | stef |
---|---|
date | Wed, 08 Oct 2014 07:05:34 -0400 |
parents | f97a25d9b2dc |
children | 63f621915e89 |
files | falco.xml |
diffstat | 1 files changed, 1 insertions(+), 2 deletions(-) [+] |
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--- a/falco.xml Wed Oct 08 06:54:57 2014 -0400 +++ b/falco.xml Wed Oct 08 07:05:34 2014 -0400 @@ -28,7 +28,7 @@ <!-- command block to call script with default R environment --> <command interpreter="bash"> <!--falco.sh $bam $bam.name $html_output $vcf_output ${html_output.files_path} &&; echo "ECHO PRINT"; --> - falco.sh $falco_cfg; + falco.sh $falco_cfg \$JAVA_JAR_PATH; </command> <!-- <command interpreter="bash"> @@ -77,7 +77,6 @@ html_out=$html_output vcf_out=$vcf_output out_path=${html_output.files_path} - jar_path=${JAVA_JAR_PATH} </configfile> </configfiles>