Mercurial > repos > stef > falco
changeset 8:44728b4dee38 draft
Uploaded
author | stef |
---|---|
date | Wed, 08 Oct 2014 06:43:03 -0400 |
parents | c84ed1b12d67 |
children | f97a25d9b2dc |
files | falco.sh |
diffstat | 1 files changed, 3 insertions(+), 0 deletions(-) [+] |
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--- a/falco.sh Thu Sep 11 10:49:52 2014 -0400 +++ b/falco.sh Wed Oct 08 06:43:03 2014 -0400 @@ -38,6 +38,9 @@ echo "MAN:"$manifest_file echo "BED chosen:"$BED_PATH echo "MAN chosen:"$MAN_PATH +echo "VARSCAN_PATH1:"$SNPEFF_JAR_PATH +echo "VARSCAN_PATH2:"\$SNPEFF_JAR_PATH +echo "VARSCAN_PATH3:"$jar_path init_file="galaxy_init.sh" echo '#!/bin/bash' > $init_file