Mercurial > repos > stef > falco
changeset 33:12f7ce7de71f draft
Uploaded
author | stef |
---|---|
date | Fri, 10 Oct 2014 09:50:26 -0400 |
parents | 3d3afdb4a34f |
children | b51c36920d7b |
files | falco-call.sh falco/init.sh |
diffstat | 2 files changed, 2 insertions(+), 2 deletions(-) [+] |
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--- a/falco-call.sh Fri Oct 10 08:56:00 2014 -0400 +++ b/falco-call.sh Fri Oct 10 09:50:26 2014 -0400 @@ -44,6 +44,8 @@ #echo "snpSift=\$SNPEFF_JAR_PATH/" >> $init_file #echo "varscan=/ccagc/lib/VarScan/VarScan.v2.2.11.jar" >> $init_file #echo "varscan=\$JAVA_JAR_PATH/VarScan.v2.3.5.jar" >> $init_file +echo "samtools=samtools" >> $init_file +echo "bcftools=bcftools" >> $init_file ## files echo "targetBed=$BED_PATH" >> $init_file
--- a/falco/init.sh Fri Oct 10 08:56:00 2014 -0400 +++ b/falco/init.sh Fri Oct 10 09:50:26 2014 -0400 @@ -24,9 +24,7 @@ #qTrim=/ccagc/bin/fastq_quality_trimmer #stampy=/ccagc/lib/stampy/stampy-1.0.18/stampy.py #samtools=/ccagc/lib/samtools/samtools-0.1.18/samtools -samtools=samtools #bcftools=/ccagc/lib/samtools/samtools-0.1.18/bcftools/bcftools -bcftools=bcftools #snpEff=/ccagc/lib/snpEff/snpEff_3_0a #snpEff=/ccagc/lib/snpEff/snpEff_v3_4 #snpSift=/ccagc/lib/SnpSift