Mercurial > repos > stef > falco

diff falco.sh @ 8:44728b4dee38 draft

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Uploaded
author stef
date Wed, 08 Oct 2014 06:43:03 -0400
parents c84ed1b12d67
children 63f621915e89
line wrap: on
line diff
--- a/falco.sh	Thu Sep 11 10:49:52 2014 -0400
+++ b/falco.sh	Wed Oct 08 06:43:03 2014 -0400
@@ -38,6 +38,9 @@
 echo "MAN:"$manifest_file
 echo "BED chosen:"$BED_PATH
 echo "MAN chosen:"$MAN_PATH
+echo "VARSCAN_PATH1:"$SNPEFF_JAR_PATH
+echo "VARSCAN_PATH2:"\$SNPEFF_JAR_PATH
+echo "VARSCAN_PATH3:"$jar_path
 
 init_file="galaxy_init.sh"
 echo '#!/bin/bash' > $init_file