Mercurial > repos > stef > falco

diff falco-call.sh @ 33:12f7ce7de71f draft

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Uploaded
author stef
date Fri, 10 Oct 2014 09:50:26 -0400
parents 3d3afdb4a34f
children f1b32c09deaf
line wrap: on
line diff
--- a/falco-call.sh	Fri Oct 10 08:56:00 2014 -0400
+++ b/falco-call.sh	Fri Oct 10 09:50:26 2014 -0400
@@ -44,6 +44,8 @@
 #echo "snpSift=\$SNPEFF_JAR_PATH/" >> $init_file
 #echo "varscan=/ccagc/lib/VarScan/VarScan.v2.2.11.jar" >> $init_file
 #echo "varscan=\$JAVA_JAR_PATH/VarScan.v2.3.5.jar" >> $init_file
+echo "samtools=samtools" >> $init_file
+echo "bcftools=bcftools" >> $init_file
 
 ## files
 echo "targetBed=$BED_PATH" >> $init_file